Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008046

Physical Location & Seq

Genomic Coordinates Reverse (-)

10873999 .. 10874865

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGATTCGAGATGATTTGTCACTATCTCTTGGTATCATCAGTGTTATCAGTTGGAGTGTTGCCGAGATACCGCAGATTATGACTAACTACAATCAAAAGTCCATTGAAGGAGTCTCTATAACCTTCTTAACAACATGGATGCTTGGTGATATCTTTAATGTTGTTGGCTGCTTGATGGAACCAGCTAGTCTTCCAGTTCAATTCTACACGGCAGTGTTGTATACTCTGGCTACACTTGTTCTCTATGTTCAATCTATATACTACGGGCATATTTACCCGCGGTTGATGAAAAACCGAAGGAATCATCAGATGGTTGATGTAGAAGAGCCTTTGCTTCGTGAAGAAGCTAAGCGTCCTTCTACCAAATCGTTGCTATGTGTGGTCTCGGTGTTCTTGTTTCTTGGATCATTCAACGTATTGAGTGGTTCAAGAAGTATGGATTTGAGAGGGAAAGATAGAGTGTTTGTAGTTGGAGGAGCAGGAGCAAGAAAGCTTTTGGAGGTCTCTAGCGGTAACTTAGGAGAAAACAACAATATTGGAATGTGGTTGGGTTGGGCAATGGCGGCGATTTACATGGGTGGAAGGCTTCCTCAAATATGTATGAATGTAAGGAGAGGAAATGTTGAGGGATTGAATCCATTAATGTTCTTCTTTGCATTCATTGGCAATGTGACTTATGTTGCAAGCATACTAGTGAACAGCGTCGAATGGTCGAAAATCGAACCGAATCTACCATGGCTAGTTGATTCAGGAGGATGTGCTGTTCTTGATTTTCTTATTCTGCTTCAGTTTTTCTACTTTCACTGTCGCAAAGTCGAGGCAGATTCCGTCAAGAAGAAGCATGAAACCGGTGAAGAAGCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

288

Amino Acids

32.26

Weight (kDa)

6.9

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	7 - 64	8.9e-18	PQ loop repeat
PQ-loop	PF04193	180 - 238	3.1e-17	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41050 AT2G41050 AT2G41050 AT2G41050 AT2G41050 AT4G20100
malus_domestica	MD12G1015700.v1.1
prunus_persica	Prupe.7G024800_v2.0.a1
pyrus_communis	pycom12g01300
rosa_chinensis	RchiOBHm_Chr3g0495241
rosa_laevigata	RLG00000022635
rosa_multiflora	Rmu_sc0002433.1_g000016
rosa_roxburghii	Rroxscaffold_6G00390660
rosa_rugosa	Rorug03G0271300 Rorug03G0271300 Rorug03G0271400 Rorug03G0271400 Rorug03G0271400 Rorug03G0271400
rosa_samantha	Rh3AG320000 Rh3BG355000 Rh3CG352000 Rh3DG354000
rosa_wichuraiana	Rw3G027950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	221
AccII	CGCG	1 cut(s)	280
AciI	CCGC	5 cut(s)	71, 278, 280, 510, 563
AclWI	GGATC	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	770
AgeI	ACCGGT	1 cut(s)	848
AgsI	TTSAA	6 cut(s)	107, 200, 251, 412, 429, 634
AhlI	ACTAGT	1 cut(s)	691
AleI	CACNNNNGTG	1 cut(s)	212
AloI	GAACNNNNNNTCC	2 cut(s)	747, 779
AluBI	AGCT	4 cut(s)	185, 347, 493, 860
AluI	AGCT	4 cut(s)	185, 347, 493, 860
Alw26I	GTCTC	3 cut(s)	118, 388, 508
AlwI	GGATC	1 cut(s)	412
ApeKI	GCWGC	1 cut(s)	168
AseI	ATTAAT	1 cut(s)	641
AsiGI	ACCGGT	1 cut(s)	848
AsuHPI	GGTGA	2 cut(s)	158, 863
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	169, 304
BceAI	ACGGC	1 cut(s)	225
BcoDI	GTCTC	3 cut(s)	118, 388, 508
BcuI	ACTAGT	1 cut(s)	691
BfaI	CTAG	4 cut(s)	186, 507, 692, 740
BisI	GCNGC	2 cut(s)	169, 564
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	2 cut(s)	170, 565
BmiI	GGNNCC	1 cut(s)	180
BmsI	GCATC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	182
Bpu1102I	GCTNAGC	1 cut(s)	348
BsaI	GGTCTC	2 cut(s)	388, 508
BsaJI	CCNNGG	2 cut(s)	278, 734
BsaWI	WCCGGW	1 cut(s)	848
Bse118I	RCCGGY	1 cut(s)	848
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	2 cut(s)	564, 673
BseDI	CCNNGG	2 cut(s)	278, 734
BseGI	GGATG	2 cut(s)	144, 761
BseMI	GCAATG	2 cut(s)	564, 673
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	280
BshTI	ACCGGT	1 cut(s)	848
BsiSI	CCGG	1 cut(s)	849
BsmAI	GTCTC	3 cut(s)	118, 388, 508
BsmI	GAATGC	1 cut(s)	656
Bso31I	GGTCTC	2 cut(s)	388, 508
Bsp143I	GATC	1 cut(s)	404
Bsp1720I	GCTNAGC	1 cut(s)	348
Bsp19I	CCATGG	1 cut(s)	734
BspACI	CCGC	5 cut(s)	71, 278, 280, 510, 563
BspFNI	CGCG	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	412
BspQI	GCTCTTC	1 cut(s)	318
BspTNI	GGTCTC	2 cut(s)	388, 508
BsrDI	GCAATG	2 cut(s)	564, 673
BsrFI	RCCGGY	1 cut(s)	848
BsrI	ACTGG	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	848
BssECI	CCNNGG	2 cut(s)	278, 734
BssMI	GATC	1 cut(s)	404
BssNAI	GTATAC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	734
Bst1107I	GTATAC	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	806
Bst6I	CTCTTC	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	685
BstDEI	CTNAG	2 cut(s)	348, 517
BstDSI	CCRYGG	2 cut(s)	278, 734
BstF5I	GGATG	2 cut(s)	144, 761
BstFNI	CGCG	1 cut(s)	280
BstKTI	GATC	1 cut(s)	407
BstMAI	GTCTC	3 cut(s)	118, 388, 508
BstMBI	GATC	1 cut(s)	404
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	182
BstZ17I	GTATAC	1 cut(s)	222
BtgI	CCRYGG	2 cut(s)	278, 734
BtsCI	GGATG	2 cut(s)	144, 761
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	3 cut(s)	46, 219, 802
Cac8I	GCNNGC	1 cut(s)	685
Cfr10I	RCCGGY	1 cut(s)	848
Cfr42I	CCGCGG	1 cut(s)	281
CseI	GACGC	2 cut(s)	341, 691
CspAI	ACCGGT	1 cut(s)	848
CviAII	CATG	4 cut(s)	135, 574, 735, 842
CviJI	RGCY	9 cut(s)	168, 185, 230, 328, 347, 493, 586, 739, 860
CviKI_1	RGCY	9 cut(s)	168, 185, 230, 328, 347, 493, 586, 739, 860
DdeI	CTNAG	2 cut(s)	348, 517
DpnI	GATC	1 cut(s)	406
DpnII	GATC	1 cut(s)	404
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	734
Eco31I	GGTCTC	2 cut(s)	388, 508
Eco32I	GATATC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	770
EcoRV	GATATC	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	734
ErhI	CCWWGG	1 cut(s)	734
FaeI	CATG	4 cut(s)	138, 577, 738, 845
FatI	CATG	4 cut(s)	134, 573, 734, 841
FauI	CCCGC	1 cut(s)	285
FblI	GTMKAC	1 cut(s)	221
Fnu4HI	GCNGC	2 cut(s)	169, 564
FokI	GGATG	2 cut(s)	151, 768
Fsp4HI	GCNGC	2 cut(s)	169, 564
FspBI	CTAG	4 cut(s)	186, 507, 692, 740
GluI	GCNGC	2 cut(s)	169, 564
HapII	CCGG	1 cut(s)	849
HgaI	GACGC	2 cut(s)	341, 691
Hin1II	CATG	4 cut(s)	138, 577, 738, 845
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	7 cut(s)	4, 111, 301, 634, 727, 746, 824
HpaII	CCGG	1 cut(s)	849
HphI	GGTGA	2 cut(s)	158, 863
Hpy166II	GTNNAC	2 cut(s)	222, 697
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	6 cut(s)	8, 338, 429, 750, 767, 832
Hpy8I	GTNNAC	2 cut(s)	222, 697
Hpy99I	CGWCG	1 cut(s)	707
HpyAV	CCTTC	5 cut(s)	101, 133, 291, 366, 576
HpyCH4III	ACNGT	1 cut(s)	806
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	2 cut(s)	656, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	2 cut(s)	348, 517
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	4 cut(s)	138, 577, 738, 845
KspI	CCGCGG	1 cut(s)	281
Kzo9I	GATC	1 cut(s)	404
LguI	GCTCTTC	1 cut(s)	318
LmnI	GCTCC	2 cut(s)	476, 482
LpnPI	CCDG	6 cut(s)	195, 207, 212, 465, 735, 862
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	4 cut(s)	186, 507, 692, 740
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	3 cut(s)	18, 512, 670
MalI	GATC	1 cut(s)	406
MboI	GATC	1 cut(s)	404
MboII	GAAGA	6 cut(s)	182, 335, 353, 640, 847, 866
MluCI	AATT	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	2 cut(s)	32, 451
MnlI	CCTC	8 cut(s)	440, 467, 493, 600, 608, 619, 746, 811
MseI	TTAA	3 cut(s)	128, 156, 641
MslI	CAYNNNNRTG	2 cut(s)	212, 692
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	1 cut(s)	849
Mva1269I	GAATGC	1 cut(s)	656
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	563
NcoI	CCATGG	1 cut(s)	734
NdeII	GATC	1 cut(s)	404
NlaIII	CATG	4 cut(s)	138, 577, 738, 845
NlaIV	GGNNCC	1 cut(s)	180
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	18, 670
OliI	CACNNNNGTG	1 cut(s)	212
PciSI	GCTCTTC	1 cut(s)	318
PctI	GAATGC	1 cut(s)	656
PfeI	GAWTC	6 cut(s)	4, 301, 634, 727, 746, 824
PinAI	ACCGGT	1 cut(s)	848
PkrI	GCNGC	2 cut(s)	170, 565
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PshBI	ATTAAT	1 cut(s)	641
PspN4I	GGNNCC	1 cut(s)	180
PsrI	GAACNNNNNNTAC	2 cut(s)	714, 746
RseI	CAYNNNNRTG	2 cut(s)	212, 692
SacII	CCGCGG	1 cut(s)	281
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	128, 156, 641
SatI	GCNGC	2 cut(s)	169, 564
Sau3AI	GATC	1 cut(s)	404
SchI	GAGTC	1 cut(s)	120
SetI	ASST	7 cut(s)	125, 187, 349, 417, 495, 504, 862
SfaNI	GCATC	1 cut(s)	129
Sfr303I	CCGCGG	1 cut(s)	281
SgrBI	CCGCGG	1 cut(s)	281
SmiMI	CAYNNNNRTG	2 cut(s)	212, 692
SpeI	ACTAGT	1 cut(s)	691
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	5 cut(s)	71, 278, 280, 510, 563
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	4 cut(s)	186, 507, 692, 740
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	1 cut(s)	806
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	5 cut(s)	7, 705, 713, 720, 816
TasI	AATT	1 cut(s)	200
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	6 cut(s)	4, 301, 634, 727, 746, 824
Tru1I	TTAA	3 cut(s)	128, 156, 641
Tru9I	TTAA	3 cut(s)	128, 156, 641
TscAI	CASTG	3 cut(s)	46, 219, 809
TseFI	GTSAC	2 cut(s)	18, 670
TseI	GCWGC	1 cut(s)	168
Tsp45I	GTSAC	2 cut(s)	18, 670
TspDTI	ATGAA	4 cut(s)	302, 617, 649, 858
TspGWI	ACGGA	1 cut(s)	817
TspRI	CASTG	3 cut(s)	46, 219, 809
VspI	ATTAAT	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	221
XspI	CTAG	4 cut(s)	186, 507, 692, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.