Prupe.7G024800_v2.0.a1

Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0008046
Physical Location & Seq
Reverse (-)
3913059 .. 3923773
10715 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G024800.1

Sequence Viewer

Length: 1248 bp
ATGCAATACAATACAGTGATGGGAGGAATGGCAGTGGGGCCCTCGAGAGATGAGCATTGTTGGGAATGGGGGAGGAAGTACATGGAGTATAATCTTTGCAGCGTCAAAGACGGCGTTTCGCTGACACTAGGTTTAATCAGTGTGGTGAGTTGGGGTGTTGCTGAGATACCTCAAGTCATCACAAACTACAAAAACAAATCCACGGACGGTCTGTCTCTTGCTTTCTTGATGACTTGGATACTCGGGGACCTTTTTAATCTTTTCGGCTGCATGTTGGAACCAGCTACGCTTCCAACACAATACTATATGGCAATGTTGTATACAATTACCACAGCTGTTCTTGCGGTGCAGACCATATACTATGGCTGCATATATCCTCGACTTAAACGCAATTTGAGACAGAAAAAGGGTTCCAACTCTAACCTGACTGAGGTTAGAAGATGCAATACTGACTTCGTTGGGAAACAGGTCAACCATGCTGGCAGAAGTATTGGGTTTGACACCCCCAGTGCAGGAAATGTTTTGAGTTCACCCATTCCTCTTCCAGGAATTTGTCCAAGTATTTCCCCCGGAAGAGAATCATACTACATATCAGCAAGATCTCTATCAAGGAGTCATACCCCTACAGAAAGGTCTTATTTGGCACAAACAACGGCTCCTACTTTTAATCATGTTCGGAATTCCAATGAAGAGCCCTTGCTTGGTGCACTTGCATCTACACAATCTGCACCATCTAATAATGTCAAGACCGTCCTCTGTGTGGTCTCTCTGATGACCCTCTTTGGTACTTTTAATCACCGATCAGTAGATAACAATCTTGATTTAATTGTTGAAAATCCAAGTCGAGGAGTAGTGCTGCGAGTAGGAAGAAGGCTGTTGCAGGTAAGTAGAGAGCTGTTGCAAGCAAAGGGTACTAAAGATAGCAGCAGGATAGGAAATTTGCTTGGTTGGGGAATGGCAGCTATTTACATTGGTGGACGGCTTCCTCAAATTTTCTTAAATATCCGAAAGGGCAATGTTGAGGGGCTTAATCCTTTAATGTTCGTCTTTGCTGTTCTTGGAAATGCCACTTATGTAGCAAGCATTATTGTGAACAGCTTGGACTGGTCGGAGATCAGACCAAATCTTCCGTGGCTGGTGGATGCTGGAGGATGCATGCTTCTGGATATTTTCATACTAATTCAATTCTTCCGATATTGGAGACACCAAGACCCAGAGGGTAAGGATGTACACTCCAATGCAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

416

Amino Acids

45.98

Weight (kDa)

9.12

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 871
AccI GTMKAC 1 cut(s) 320
AciI CCGC 1 cut(s) 344
AcsI RAATTY 4 cut(s) 549, 679, 937, 990
AfaI GTAC 4 cut(s) 80, 787, 913, 1230
AfiI CCNNNNNNNGG 6 cut(s) 430, 512, 545, 701, 760, 845
AgsI TTSAA 2 cut(s) 833, 1184
AhdI GACNNNNNGTC 1 cut(s) 211
AjnI CCWGG 1 cut(s) 544
AluBI AGCT 5 cut(s) 284, 335, 895, 962, 1098
AluI AGCT 5 cut(s) 284, 335, 895, 962, 1098
Alw21I GWGCWC 1 cut(s) 709
Alw26I GTCTC 4 cut(s) 219, 391, 769, 1195
Alw44I GTGCAC 1 cut(s) 705
Ama87I CYCGRG 2 cut(s) 43, 242
AoxI GGCC 1 cut(s) 38
ApaI GGGCCC 1 cut(s) 42
ApaLI GTGCAC 1 cut(s) 705
ApeKI GCWGC 7 cut(s) 99, 267, 366, 856, 924, 959, 1241
ApoI RAATTY 4 cut(s) 549, 679, 937, 990
AspS9I GGNCC 3 cut(s) 38, 39, 247
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 3 cut(s) 157, 522, 788
AvaI CYCGRG 2 cut(s) 43, 242
AvaII GGWCC 1 cut(s) 247
BaeGI GKGCMC 2 cut(s) 42, 709
BanII GRGCYC 2 cut(s) 42, 696
BarI GAAGNNNNNNTAC 2 cut(s) 430, 462
Bbv12I GWGCWC 1 cut(s) 709
BbvI GCAGC 6 cut(s) 111, 254, 353, 843, 936, 971
BccI CCATC 2 cut(s) 13, 739
BceAI ACGGC 3 cut(s) 127, 669, 995
BciT130I CCWGG 1 cut(s) 546
BciVI GTATCC 1 cut(s) 231
BcnI CCSGG 1 cut(s) 570
BcoDI GTCTC 4 cut(s) 219, 391, 769, 1195
BfaI CTAG 2 cut(s) 128, 1246
BfmI CTRYAG 1 cut(s) 624
BfuAI ACCTGC 1 cut(s) 871
BfuI GTATCC 1 cut(s) 231
BglII AGATCT 1 cut(s) 599
BisI GCNGC 7 cut(s) 100, 268, 367, 857, 925, 960, 1242
BlsI GCNGC 7 cut(s) 101, 269, 368, 858, 926, 961, 1243
Bme1390I CCNGG 2 cut(s) 546, 570
Bme18I GGWCC 1 cut(s) 247
BmeRI GACNNNNNGTC 1 cut(s) 211
BmeT110I CYCGRG 2 cut(s) 43, 242
BmgT120I GGNCC 3 cut(s) 38, 39, 247
BmiI GGNNCC 6 cut(s) 39, 40, 248, 279, 412, 657
BmrFI CCNGG 2 cut(s) 546, 570
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 4 cut(s) 431, 722, 1132, 1142
BmuI ACTGGG 1 cut(s) 501
BpmI CTGGAG 1 cut(s) 1167
BpuEI CTTGAG 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 570
BsaBI GATNNNNATC 2 cut(s) 604, 813
BsaI GGTCTC 1 cut(s) 769
BsaJI CCNNGG 3 cut(s) 201, 568, 1130
BsaXI ACNNNNNCTCC 2 cut(s) 640, 670
Bsc4I CCNNNNNNNGG 6 cut(s) 430, 512, 545, 701, 760, 845
Bse1I ACTGG 2 cut(s) 507, 1109
Bse3DI GCAATG 2 cut(s) 318, 1021
Bse8I GATNNNNATC 2 cut(s) 604, 813
BseBI CCWGG 1 cut(s) 546
BseDI CCNNGG 3 cut(s) 201, 568, 1130
BseGI GGATG 3 cut(s) 1147, 1157, 1231
BseJI GATNNNNATC 2 cut(s) 604, 813
BseLI CCNNNNNNNGG 6 cut(s) 430, 512, 545, 701, 760, 845
BseMI GCAATG 2 cut(s) 318, 1021
BseMII CTCAG 2 cut(s) 153, 420
BseNI ACTGG 2 cut(s) 507, 1109
BseRI GAGGAG 1 cut(s) 861
BseSI GKGCMC 2 cut(s) 42, 709
BseXI GCAGC 6 cut(s) 111, 254, 353, 843, 936, 971
BsgI GTGCAG 3 cut(s) 368, 531, 711
BshFI GGCC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 709
BsiHKCI CYCGRG 2 cut(s) 43, 242
BsiSI CCGG 1 cut(s) 570
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 6 cut(s) 430, 512, 545, 701, 760, 845
BsmAI GTCTC 4 cut(s) 219, 391, 769, 1195
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 1 cut(s) 40
Bso31I GGTCTC 1 cut(s) 769
BsoBI CYCGRG 2 cut(s) 43, 242
Bsp120I GGGCCC 1 cut(s) 38
Bsp1286I GDGCHC 3 cut(s) 42, 696, 709
Bsp1407I TGTACA 1 cut(s) 1228
Bsp143I GATC 3 cut(s) 599, 800, 1113
BspACI CCGC 1 cut(s) 344
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 2 cut(s) 154, 421
BspLI GGNNCC 6 cut(s) 39, 40, 248, 279, 412, 657
BspMI ACCTGC 1 cut(s) 871
BspQI GCTCTTC 1 cut(s) 684
BspTNI GGTCTC 1 cut(s) 769
BsrDI GCAATG 2 cut(s) 318, 1021
BsrGI TGTACA 1 cut(s) 1228
BsrI ACTGG 2 cut(s) 507, 1109
BssECI CCNNGG 3 cut(s) 201, 568, 1130
BssMI GATC 3 cut(s) 599, 800, 1113
BssNAI GTATAC 1 cut(s) 321
Bst1107I GTATAC 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 3 cut(s) 16, 209, 751
Bst6I CTCTTC 3 cut(s) 546, 568, 684
BstAUI TGTACA 1 cut(s) 1228
BstC8I GCNNGC 4 cut(s) 481, 903, 1081, 1157
BstDEI CTNAG 2 cut(s) 162, 429
BstDSI CCRYGG 2 cut(s) 201, 1130
BstENI CCTNNNNNAGG 2 cut(s) 428, 543
BstF5I GGATG 3 cut(s) 1147, 1157, 1231
BstKTI GATC 3 cut(s) 602, 803, 1116
BstMAI GTCTC 4 cut(s) 219, 391, 769, 1195
BstMBI GATC 3 cut(s) 599, 800, 1113
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 1 cut(s) 546
BstNSI RCATGY 2 cut(s) 274, 1159
BstSCI CCNGG 2 cut(s) 544, 568
BstSFI CTRYAG 1 cut(s) 624
BstSLI GKGCMC 2 cut(s) 42, 709
BstV1I GCAGC 6 cut(s) 111, 254, 353, 843, 936, 971
BstX2I RGATCY 1 cut(s) 599
BstYI RGATCY 1 cut(s) 599
BstZ17I GTATAC 1 cut(s) 321
BsuI GTATCC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 40
BtgI CCRYGG 2 cut(s) 201, 1130
BtsCI GGATG 3 cut(s) 1147, 1157, 1231
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 4 cut(s) 21, 39, 145, 514
BveI ACCTGC 1 cut(s) 871
Cac8I GCNNGC 4 cut(s) 481, 903, 1081, 1157
Cfr13I GGNCC 3 cut(s) 38, 39, 247
CseI GACGC 1 cut(s) 91
Csp6I GTAC 4 cut(s) 79, 786, 912, 1229
CviAII CATG 5 cut(s) 82, 271, 476, 671, 1156
CviQI GTAC 4 cut(s) 79, 786, 912, 1229
DdeI CTNAG 2 cut(s) 162, 429
DpnI GATC 3 cut(s) 601, 802, 1115
DpnII GATC 3 cut(s) 599, 800, 1113
DriI GACNNNNNGTC 1 cut(s) 211
Eam1104I CTCTTC 3 cut(s) 546, 568, 684
Eam1105I GACNNNNNGTC 1 cut(s) 211
EarI CTCTTC 3 cut(s) 546, 568, 684
Eco24I GRGCYC 2 cut(s) 42, 696
Eco31I GGTCTC 1 cut(s) 769
Eco47I GGWCC 1 cut(s) 247
Eco88I CYCGRG 2 cut(s) 43, 242
EcoNI CCTNNNNNAGG 2 cut(s) 428, 543
EcoO109I RGGNCCY 3 cut(s) 38, 39, 247
EcoRI GAATTC 1 cut(s) 679
EcoRII CCWGG 1 cut(s) 544
EcoT22I ATGCAT 1 cut(s) 1157
EcoT38I GRGCYC 2 cut(s) 42, 696
FaeI CATG 5 cut(s) 85, 274, 479, 674, 1159
FaqI GGGAC 1 cut(s) 260
FatI CATG 5 cut(s) 81, 270, 475, 670, 1155
FblI GTMKAC 1 cut(s) 320
Fnu4HI GCNGC 7 cut(s) 100, 268, 367, 857, 925, 960, 1242
FokI GGATG 3 cut(s) 1154, 1164, 1238
FriOI GRGCYC 2 cut(s) 42, 696
Fsp4HI GCNGC 7 cut(s) 100, 268, 367, 857, 925, 960, 1242
FspBI CTAG 2 cut(s) 128, 1246
GluI GCNGC 7 cut(s) 100, 268, 367, 857, 925, 960, 1242
GsuI CTGGAG 1 cut(s) 1167
HaeIII GGCC 1 cut(s) 40
HapII CCGG 1 cut(s) 570
HgaI GACGC 1 cut(s) 91
Hin1II CATG 5 cut(s) 85, 274, 479, 674, 1159
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 2 cut(s) 578, 613
HpaII CCGG 1 cut(s) 570
HphI GGTGA 3 cut(s) 157, 522, 788
Hpy166II GTNNAC 7 cut(s) 321, 472, 530, 707, 977, 1093, 1231
Hpy188I TCNGA 6 cut(s) 678, 771, 1007, 1111, 1118, 1193
Hpy188III TCNNGA 5 cut(s) 45, 226, 745, 818, 1163
Hpy8I GTNNAC 7 cut(s) 321, 472, 530, 707, 977, 1093, 1231
HpyAV CCTTC 1 cut(s) 864
HpyCH4III ACNGT 3 cut(s) 16, 209, 751
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 2 cut(s) 162, 429
Hsp92II CATG 5 cut(s) 85, 274, 479, 674, 1159
Kzo9I GATC 3 cut(s) 599, 800, 1113
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 1 cut(s) 661
Lsp1109I GCAGC 6 cut(s) 111, 254, 353, 843, 936, 971
LweI GCATC 4 cut(s) 431, 722, 1132, 1142
MaeI CTAG 2 cut(s) 128, 1246
MalI GATC 3 cut(s) 601, 802, 1115
MboI GATC 3 cut(s) 599, 800, 1113
MboII GAAGA 7 cut(s) 450, 533, 585, 701, 879, 1118, 1180
MflI RGATCY 1 cut(s) 599
MhlI GDGCHC 3 cut(s) 42, 696, 709
MluCI AATT 9 cut(s) 324, 391, 549, 679, 825, 937, 990, 1179, 1184
MlyI GAGTC 1 cut(s) 622
MmeI TCCRAC 4 cut(s) 255, 317, 438, 1089
Mph1103I ATGCAT 1 cut(s) 1157
MseI TTAA 9 cut(s) 134, 255, 384, 666, 792, 824, 998, 1029, 1037
MslI CAYNNNNRTG 2 cut(s) 1088, 1236
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 1 cut(s) 570
MspR9I CCNGG 2 cut(s) 546, 570
MvaI CCWGG 1 cut(s) 546
MwoI GCNNNNNNNGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 570
NdeII GATC 3 cut(s) 599, 800, 1113
NlaIII CATG 5 cut(s) 85, 274, 479, 674, 1159
NlaIV GGNNCC 6 cut(s) 39, 40, 248, 279, 412, 657
NsiI ATGCAT 1 cut(s) 1157
NspI RCATGY 2 cut(s) 274, 1159
PaeI GCATGC 1 cut(s) 1159
PaeR7I CTCGAG 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 684
PfeI GAWTC 1 cut(s) 578
PfoI TCCNGGA 1 cut(s) 544
PkrI GCNGC 7 cut(s) 101, 269, 368, 858, 926, 961, 1243
PleI GAGTC 1 cut(s) 621
PpsI GAGTC 1 cut(s) 621
PpuMI RGGWCCY 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 544
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 6 cut(s) 39, 40, 248, 279, 412, 657
PspOMI GGGCCC 1 cut(s) 38
PspPI GGNCC 3 cut(s) 38, 39, 247
PspPPI RGGWCCY 1 cut(s) 247
PsuI RGATCY 1 cut(s) 599
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 4 cut(s) 80, 787, 913, 1230
RsaNI GTAC 4 cut(s) 79, 786, 912, 1229
RseI CAYNNNNRTG 2 cut(s) 1088, 1236
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 9 cut(s) 134, 255, 384, 666, 792, 824, 998, 1029, 1037
SatI GCNGC 7 cut(s) 100, 268, 367, 857, 925, 960, 1242
Sau3AI GATC 3 cut(s) 599, 800, 1113
Sau96I GGNCC 3 cut(s) 38, 39, 247
SchI GAGTC 1 cut(s) 622
ScrFI CCNGG 2 cut(s) 546, 570
SduI GDGCHC 3 cut(s) 42, 696, 709
SfaNI GCATC 4 cut(s) 431, 722, 1132, 1142
SfcI CTRYAG 1 cut(s) 624
Sfr274I CTCGAG 1 cut(s) 43
SinI GGWCC 1 cut(s) 247
SlaI CTCGAG 1 cut(s) 43
SmiMI CAYNNNNRTG 2 cut(s) 1088, 1236
SmlI CTYRAG 2 cut(s) 43, 171
SmoI CTYRAG 2 cut(s) 43, 171
SphI GCATGC 1 cut(s) 1159
Sse9I AATT 9 cut(s) 324, 391, 549, 679, 825, 937, 990, 1179, 1184
SsiI CCGC 1 cut(s) 344
SspMI CTAG 2 cut(s) 128, 1246
StyD4I CCNGG 2 cut(s) 544, 568
TaaI ACNGT 3 cut(s) 16, 209, 751
TaqI TCGA 3 cut(s) 44, 379, 844
TasI AATT 9 cut(s) 324, 391, 549, 679, 825, 937, 990, 1179, 1184
TatI WGTACW 2 cut(s) 78, 1228
TfiI GAWTC 1 cut(s) 578
Tru1I TTAA 9 cut(s) 134, 255, 384, 666, 792, 824, 998, 1029, 1037
Tru9I TTAA 9 cut(s) 134, 255, 384, 666, 792, 824, 998, 1029, 1037
TscAI CASTG 4 cut(s) 21, 39, 145, 514
TseI GCWGC 7 cut(s) 99, 267, 366, 856, 924, 959, 1241
TspDTI ATGAA 2 cut(s) 702, 1162
TspGWI ACGGA 2 cut(s) 218, 1119
TspRI CASTG 4 cut(s) 21, 39, 145, 514
VneI GTGCAC 1 cut(s) 705
VpaK11BI GGWCC 1 cut(s) 247
XagI CCTNNNNNAGG 2 cut(s) 428, 543
XapI RAATTY 4 cut(s) 549, 679, 937, 990
XceI RCATGY 2 cut(s) 274, 1159
XcmI CCANNNNNNNNNTGG 1 cut(s) 1128
XhoI CTCGAG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 320
XspI CTAG 2 cut(s) 128, 1246
Zsp2I ATGCAT 1 cut(s) 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.