AT2G41350

HAUS augmin-like complex subunit 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012064
Physical Location & Seq
Forward (+)
17231206 .. 17233912
2707 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41350.2

Sequence Viewer

Length: 897 bp
ATGAGCGACGTCACCGGTGATCTCGCGGCGGTGAGTGAAGCCAAGGGAGGTTCTGACGCCGCCCGGATATCGGAGGTGAAGGCGTGGCTCACCTCTCAGTTCGAAGCTGTCGGCAAAGAAGTACCCAATTTCGAGTACACTCATCGAAGCATTACCCATTTGTATAATCTCGCTACCGCTTCTCAAGCTAAGTCTCAGGCTGCCACCATTGTCGCTAACGATTTTCGTCTCAAGGCTTCAGAATATCGTGCTCAAGCGGCTAGGATTAGAGAGATATTGGAGAGTGCAGGAATGTCACAAGAGAGCTTACCGTCAAATGTGGTCTCTTCAGCTCAAGTTCTTGCAAATGTGGCTAATTTGTTGAACATACGGGACACTGAACTGAGCAGTTTCCTTGTAGCAATGGGAGACATATCTCTGAGGAAGACTGGAGTGGAAGAGAAGAGGGCTAAAGCACAGAAGGAGTCCAATGCTCTTCTTGACTATACAAGGAAAGCGATACAGAGGCTGACGTATTTGAAGAAAATCCTTGCGCAGCTAGAAGATGATGTAGTCCCTTGTGAATCACAGATGGAGAACTGGAAAACAAATTTGGAAGTGATGGCGGTGAAGGAGGAACAATACATACAGCAGTACAAGAAGTATGAGATGTTACTCAATCGTGTTGGCTACACTCCTAAGATCAGCCACAGAGAGCTGGTAGAAATGGCAGAGCACCGGAAGGAATTGGACAAGATGACAAAACCAGTCCTTGATACTCTACGAAGCTACCAGGATTTACCTCCGGACAAAGCTTTAGCTGCACTAGCAATCGAAGACAAGAAAAGACAGTTTACAGCCGCGGAAAAGTATCTAGAAGAAGTATTACAATCAGCCCTTGAGACAAACGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0015630 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

33.49

Weight (kDa)

5.64

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS1 PF25762 25 - 263 1.9e-75 HAUS augmin-like complex subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41350 AT2G41350
fragaria_vesca FvH4_6g25170
malus_domestica MD12G1092800.v1.1 MD14G1084500.v1.1
prunus_persica Prupe.7G043700_v2.0.a1
pyrus_communis pycom12g07760 pycom14g07420
rosa_chinensis RchiOBHm_Chr2g0125061
rosa_laevigata RLG00000018846
rosa_multiflora Rmu_sc0003505.1_g000017
rosa_roxburghii Rroxscaffold_2G00118280 Rroxscaffold_2G00118730
rosa_rugosa Rorug02G0255300
rosa_samantha Rh2AG313800 Rh2BG322100 Rh2CG304400 Rh2DG340500
rosa_wichuraiana Rw2G025390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
Acc16I TGCGCA 1 cut(s) 534
AccII CGCG 2 cut(s) 26, 842
AccIII TCCGGA 1 cut(s) 784
AciI CCGC 8 cut(s) 26, 29, 60, 177, 257, 605, 840, 842
AcsI RAATTY 1 cut(s) 589
AcuI CTGAAG 2 cut(s) 222, 312
AcyI GRCGYC 2 cut(s) 9, 57
AfaI GTAC 3 cut(s) 123, 137, 635
AfiI CCNNNNNNNGG 1 cut(s) 70
AgeI ACCGGT 1 cut(s) 14
AgsI TTSAA 2 cut(s) 364, 520
AjnI CCWGG 1 cut(s) 771
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 9 cut(s) 107, 188, 306, 332, 538, 697, 768, 794, 800
AluI AGCT 9 cut(s) 107, 188, 306, 332, 538, 697, 768, 794, 800
Alw21I GWGCWC 2 cut(s) 253, 717
Alw26I GTCTC 5 cut(s) 198, 233, 328, 402, 875
AlwNI CAGNNNCTG 1 cut(s) 508
Aor13HI TCCGGA 1 cut(s) 784
ApeKI GCWGC 3 cut(s) 200, 535, 800
ApoI RAATTY 1 cut(s) 589
AsiGI ACCGGT 1 cut(s) 14
AspLEI GCGC 1 cut(s) 535
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 6 cut(s) 4, 29, 43, 82, 88, 619
AsuII TTCGAA 1 cut(s) 102
BarI GAAGNNNNNNTAC 2 cut(s) 849, 881
BbsI GAAGAC 2 cut(s) 431, 822
Bbv12I GWGCWC 2 cut(s) 253, 717
BbvI GCAGC 3 cut(s) 187, 547, 787
BccI CCATC 2 cut(s) 565, 595
BciT130I CCWGG 1 cut(s) 773
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 5 cut(s) 198, 233, 328, 402, 875
BfaI CTAG 4 cut(s) 261, 539, 806, 854
BisI GCNGC 7 cut(s) 27, 60, 201, 258, 536, 801, 840
BlsI GCNGC 7 cut(s) 28, 61, 202, 259, 537, 802, 841
Bme1390I CCNGG 2 cut(s) 64, 773
BmrFI CCNGG 2 cut(s) 64, 773
BpiI GAAGAC 2 cut(s) 431, 822
BpmI CTGGAG 1 cut(s) 450
Bpu14I TTCGAA 1 cut(s) 102
BpuEI CTTGAG 4 cut(s) 168, 215, 237, 318
BpuMI CCSGG 1 cut(s) 64
BsaHI GRCGYC 2 cut(s) 9, 57
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 2 cut(s) 42, 840
BsaWI WCCGGW 3 cut(s) 14, 717, 784
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 3 cut(s) 433, 584, 746
Bse3DI GCAATG 1 cut(s) 408
BseAI TCCGGA 1 cut(s) 784
BseBI CCWGG 1 cut(s) 773
BseDI CCNNGG 2 cut(s) 42, 840
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 4 cut(s) 110, 209, 374, 410
BseNI ACTGG 3 cut(s) 433, 584, 746
BseXI GCAGC 3 cut(s) 187, 547, 787
BsgI GTGCAG 2 cut(s) 306, 786
Bsh1236I CGCG 2 cut(s) 26, 842
BshTI ACCGGT 1 cut(s) 14
BsiHKAI GWGCWC 2 cut(s) 253, 717
BsiSI CCGG 4 cut(s) 15, 64, 718, 785
BslFI GGGAC 2 cut(s) 386, 539
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 5 cut(s) 198, 233, 328, 402, 875
BsmBI CGTCTC 1 cut(s) 233
BsmFI GGGAC 2 cut(s) 386, 539
Bso31I GGTCTC 1 cut(s) 328
Bsp119I TTCGAA 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 253, 717
Bsp13I TCCGGA 1 cut(s) 784
Bsp143I GATC 2 cut(s) 19, 681
BspACI CCGC 8 cut(s) 26, 29, 60, 177, 257, 605, 840, 842
BspCNI CTCAG 4 cut(s) 109, 208, 375, 411
BspEI TCCGGA 1 cut(s) 784
BspFNI CGCG 2 cut(s) 26, 842
BspQI GCTCTTC 1 cut(s) 480
BspT104I TTCGAA 1 cut(s) 102
BspTNI GGTCTC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 408
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 3 cut(s) 433, 584, 746
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 42, 840
BssMI GATC 2 cut(s) 19, 681
BssNI GRCGYC 2 cut(s) 9, 57
BssT1I CCWWGG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 773
Bst4CI ACNGT 2 cut(s) 312, 831
Bst6I CTCTTC 4 cut(s) 331, 432, 437, 480
BstACI GRCGYC 2 cut(s) 9, 57
BstBI TTCGAA 1 cut(s) 102
BstDEI CTNAG 6 cut(s) 96, 189, 195, 383, 419, 678
BstDSI CCRYGG 1 cut(s) 840
BstFNI CGCG 2 cut(s) 26, 842
BstHHI GCGC 1 cut(s) 535
BstKTI GATC 2 cut(s) 22, 684
BstMAI GTCTC 5 cut(s) 198, 233, 328, 402, 875
BstMBI GATC 2 cut(s) 19, 681
BstMWI GCNNNNNNNGC 5 cut(s) 185, 257, 350, 800, 806
BstNI CCWGG 1 cut(s) 773
BstSCI CCNGG 2 cut(s) 62, 771
BstUI CGCG 2 cut(s) 26, 842
BstV1I GCAGC 3 cut(s) 187, 547, 787
BstV2I GAAGAC 2 cut(s) 431, 822
BtgI CCRYGG 1 cut(s) 840
BtsIMutI CAGTG 1 cut(s) 375
CaiI CAGNNNCTG 1 cut(s) 508
CfoI GCGC 1 cut(s) 535
Cfr10I RCCGGY 1 cut(s) 14
Cfr42I CCGCGG 1 cut(s) 843
CseI GACGC 1 cut(s) 65
Csp6I GTAC 3 cut(s) 122, 136, 634
CspAI ACCGGT 1 cut(s) 14
CviQI GTAC 3 cut(s) 122, 136, 634
DdeI CTNAG 6 cut(s) 96, 189, 195, 383, 419, 678
DpnI GATC 2 cut(s) 21, 683
DpnII GATC 2 cut(s) 19, 681
Eam1104I CTCTTC 4 cut(s) 331, 432, 437, 480
EarI CTCTTC 4 cut(s) 331, 432, 437, 480
Eco130I CCWWGG 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 328
Eco32I GATATC 1 cut(s) 69
Eco57I CTGAAG 2 cut(s) 222, 312
EcoRII CCWGG 1 cut(s) 771
EcoRV GATATC 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 233
FaiI YATR 6 cut(s) 165, 368, 413, 486, 626, 645
FaqI GGGAC 2 cut(s) 386, 539
Fnu4HI GCNGC 7 cut(s) 27, 60, 201, 258, 536, 801, 840
Fsp4HI GCNGC 7 cut(s) 27, 60, 201, 258, 536, 801, 840
FspBI CTAG 4 cut(s) 261, 539, 806, 854
FspI TGCGCA 1 cut(s) 534
GlaI GCGC 1 cut(s) 534
GluI GCNGC 7 cut(s) 27, 60, 201, 258, 536, 801, 840
GsuI CTGGAG 1 cut(s) 450
HapII CCGG 4 cut(s) 15, 64, 718, 785
HgaI GACGC 1 cut(s) 65
HhaI GCGC 1 cut(s) 535
Hin1I GRCGYC 2 cut(s) 9, 57
Hin6I GCGC 1 cut(s) 533
HinP1I GCGC 1 cut(s) 533
HindIII AAGCTT 1 cut(s) 792
HinfI GANTC 2 cut(s) 464, 563
HpaII CCGG 4 cut(s) 15, 64, 718, 785
HphI GGTGA 6 cut(s) 4, 29, 43, 82, 88, 619
Hpy166II GTNNAC 2 cut(s) 138, 834
Hpy188I TCNGA 4 cut(s) 55, 73, 241, 420
Hpy188III TCNNGA 3 cut(s) 479, 785, 854
Hpy8I GTNNAC 2 cut(s) 138, 834
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 4 cut(s) 73, 454, 604, 715
HpyCH4III ACNGT 2 cut(s) 312, 831
HpyCH4IV ACGT 2 cut(s) 9, 512
HpyCH4V TGCA 3 cut(s) 287, 344, 803
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 257, 350, 800, 806
HpyF3I CTNAG 6 cut(s) 96, 189, 195, 383, 419, 678
HpySE526I ACGT 2 cut(s) 9, 512
Hsp92I GRCGYC 2 cut(s) 9, 57
HspAI GCGC 1 cut(s) 533
Kpn2I TCCGGA 1 cut(s) 784
KspI CCGCGG 1 cut(s) 843
Kzo9I GATC 2 cut(s) 19, 681
LguI GCTCTTC 1 cut(s) 480
Lsp1109I GCAGC 3 cut(s) 187, 547, 787
MaeI CTAG 4 cut(s) 261, 539, 806, 854
MaeII ACGT 2 cut(s) 9, 512
MaeIII GTNAC 3 cut(s) 10, 294, 651
MalI GATC 2 cut(s) 21, 683
MboI GATC 2 cut(s) 19, 681
MboII GAAGA 9 cut(s) 318, 436, 449, 454, 467, 532, 554, 827, 869
MhlI GDGCHC 2 cut(s) 253, 717
MluCI AATT 4 cut(s) 127, 355, 589, 725
MlyI GAGTC 1 cut(s) 473
MnlI CCTC 8 cut(s) 41, 67, 103, 414, 438, 498, 607, 792
MroI TCCGGA 1 cut(s) 784
MspA1I CMGCKG 1 cut(s) 842
MspI CCGG 4 cut(s) 15, 64, 718, 785
MspR9I CCNGG 2 cut(s) 64, 773
MvaI CCWGG 1 cut(s) 773
MvnI CGCG 2 cut(s) 26, 842
MwoI GCNNNNNNNGC 5 cut(s) 185, 257, 350, 800, 806
NciI CCSGG 1 cut(s) 64
NdeII GATC 2 cut(s) 19, 681
NmuCI GTSAC 2 cut(s) 10, 294
NsbI TGCGCA 1 cut(s) 534
NspV TTCGAA 1 cut(s) 102
PciSI GCTCTTC 1 cut(s) 480
PfeI GAWTC 1 cut(s) 563
PinAI ACCGGT 1 cut(s) 14
PkrI GCNGC 7 cut(s) 28, 61, 202, 259, 537, 802, 841
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
Psp6I CCWGG 1 cut(s) 771
PspGI CCWGG 1 cut(s) 771
PsrI GAACNNNNNNTAC 2 cut(s) 609, 641
PstNI CAGNNNCTG 1 cut(s) 508
RsaI GTAC 3 cut(s) 123, 137, 635
RsaNI GTAC 3 cut(s) 122, 136, 634
SacII CCGCGG 1 cut(s) 843
SapI GCTCTTC 1 cut(s) 480
SatI GCNGC 7 cut(s) 27, 60, 201, 258, 536, 801, 840
Sau3AI GATC 2 cut(s) 19, 681
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 2 cut(s) 64, 773
SduI GDGCHC 2 cut(s) 253, 717
Sfr303I CCGCGG 1 cut(s) 843
SfuI TTCGAA 1 cut(s) 102
SgrAI CRCCGGYG 1 cut(s) 14
SgrBI CCGCGG 1 cut(s) 843
SmlI CTYRAG 5 cut(s) 183, 230, 252, 333, 878
SmoI CTYRAG 5 cut(s) 183, 230, 252, 333, 878
Sse9I AATT 4 cut(s) 127, 355, 589, 725
SsiI CCGC 8 cut(s) 26, 29, 60, 177, 257, 605, 840, 842
SspMI CTAG 4 cut(s) 261, 539, 806, 854
StyD4I CCNGG 2 cut(s) 62, 771
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 2 cut(s) 312, 831
TaiI ACGT 2 cut(s) 12, 515
TaqI TCGA 4 cut(s) 102, 132, 145, 813
TasI AATT 4 cut(s) 127, 355, 589, 725
TatI WGTACW 2 cut(s) 135, 633
TauI GCSGC 4 cut(s) 29, 62, 260, 842
TfiI GAWTC 1 cut(s) 563
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 2 cut(s) 10, 294
TseI GCWGC 3 cut(s) 200, 535, 800
Tsp45I GTSAC 2 cut(s) 10, 294
TspRI CASTG 1 cut(s) 382
XapI RAATTY 1 cut(s) 589
XbaI TCTAGA 1 cut(s) 853
XspI CTAG 4 cut(s) 261, 539, 806, 854
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.