Prupe.7G043700_v2.0.a1

HAUS augmin-like complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012064
Physical Location & Seq
Forward (+)
8007572 .. 8010457
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G043700.1

Sequence Viewer

Length: 897 bp
ATGACCGATCCAACGGTAAACGAAACGACGTCGAAGAGCGGCGGCGGCGGCGGGTCTGACGCATCTCGAATCGGAGAGGTAAAGCAATGGCTGACTCAAGAGTTCTCCCAAGCCGGAAAAGAAGTGCCCGATTTCGAATACACCCCTCGATCGGTGGCATATTTACACAACCTTGCCACTCTCTCCCAAGCCCAAACTCAAGCTTCCAAGATCCTCGCCACTGATTTCCGCCTCAAAGCCTCCGAATACCGAGCCCAAGCTGCGAGGATCGGAGAGATATTGGAGAGTGTTGGTTTGGCACAAGAGGGTTTGGCTTCGAACGTGGTGTCTTCAGCTCAGGTCTTAGCGAATGTAGCCAATTTGTTGAATATAAGAGACACTGAGCTAAGCAGTTTTCTTGTGGCGATGGGGGATATATCCTTGAGGAAGACGGGTGTGGAGGAGAAAAGAGCTAAAGCGCAAAAAGAGTCCAATATACTTCTTGATTATACTCGAAAGGCGATTTCCAGGTTAACTTATTTGAAAAGAACACTTGCCCAACTAGAAGATGATGCAGGTCAATGCGAGGCACACATTGAGCATTGGAAGAACAACTTGGCGCTGATGCTTGGTAAGGAGAAACAATACAACCAAGAAACTGTCCGCTTTAAGGACACCCTTAACCGTGTGGGTTACACCCCAGATATTAGCCATGGGGTCTTGGTTGGATTGGCTGAGGAACGAAAGGAATTAGAGAAGAAGACAAAGCCAGTCCTTGATACTTTGAGAAGCTACCAAGATTTACCTCCGGATAAAGCTTTGGCTGCTTTAGCAATCGAGGACAAGAAAAGGCAATATGCTGCTGCGGAAAAGTATTTCGAAGATGTACTGCATACAGCTCTTTCCACTTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0015630 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

32.96

Weight (kDa)

6.56

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41350 AT2G41350
fragaria_vesca FvH4_6g25170
malus_domestica MD12G1092800.v1.1 MD14G1084500.v1.1
prunus_persica Prupe.7G043700_v2.0.a1
pyrus_communis pycom12g07760 pycom14g07420
rosa_chinensis RchiOBHm_Chr2g0125061
rosa_laevigata RLG00000018846
rosa_multiflora Rmu_sc0003505.1_g000017
rosa_roxburghii Rroxscaffold_2G00118280 Rroxscaffold_2G00118730
rosa_rugosa Rorug02G0255300
rosa_samantha Rh2AG313800 Rh2BG322100 Rh2CG304400 Rh2DG340500
rosa_wichuraiana Rw2G025390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 32
Acc36I ACCTGC 1 cut(s) 545
AccBSI CCGCTC 1 cut(s) 39
AccIII TCCGGA 1 cut(s) 787
AciI CCGC 8 cut(s) 39, 42, 45, 48, 51, 229, 643, 845
AclWI GGATC 3 cut(s) 2, 205, 275
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 1 cut(s) 867
AfiI CCNNNNNNNGG 2 cut(s) 151, 649
AgsI TTSAA 3 cut(s) 367, 523, 891
AjnI CCWGG 1 cut(s) 506
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
AluBI AGCT 8 cut(s) 203, 260, 335, 385, 452, 771, 797, 878
AluI AGCT 8 cut(s) 203, 260, 335, 385, 452, 771, 797, 878
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 3 cut(s) 2, 205, 275
Aor13HI TCCGGA 1 cut(s) 787
ApeKI GCWGC 4 cut(s) 260, 803, 839, 842
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AspLEI GCGC 2 cut(s) 460, 601
AsuII TTCGAA 3 cut(s) 135, 317, 858
BaeGI GKGCMC 1 cut(s) 129
BanII GRGCYC 1 cut(s) 256
BbsI GAAGAC 3 cut(s) 321, 434, 746
BbvCI CCTCAGC 1 cut(s) 714
BbvI GCAGC 4 cut(s) 247, 790, 826, 829
BccI CCATC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 508
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 1 cut(s) 542
BfoI RGCGCY 1 cut(s) 602
BfuAI ACCTGC 1 cut(s) 545
BisI GCNGC 8 cut(s) 40, 43, 46, 49, 261, 804, 840, 843
BlpI GCTNAGC 1 cut(s) 386
BlsI GCNGC 8 cut(s) 41, 44, 47, 50, 262, 805, 841, 844
Bme1390I CCNGG 1 cut(s) 508
BmrFI CCNGG 1 cut(s) 508
BmsI GCATC 3 cut(s) 71, 541, 594
BpiI GAAGAC 3 cut(s) 321, 434, 746
Bpu10I CCTNAGC 2 cut(s) 336, 714
Bpu1102I GCTNAGC 1 cut(s) 386
Bpu14I TTCGAA 3 cut(s) 135, 317, 858
BpuEI CTTGAG 3 cut(s) 81, 183, 442
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 691
BsaWI WCCGGW 1 cut(s) 787
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 649
Bse1I ACTGG 1 cut(s) 749
Bse3DI GCAATG 1 cut(s) 92
BseAI TCCGGA 1 cut(s) 787
BseBI CCWGG 1 cut(s) 508
BseDI CCNNGG 1 cut(s) 691
BseLI CCNNNNNNNGG 2 cut(s) 151, 649
BseMI GCAATG 1 cut(s) 92
BseMII CTCAG 3 cut(s) 350, 372, 705
BseNI ACTGG 1 cut(s) 749
BseRI GAGGAG 1 cut(s) 455
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 4 cut(s) 247, 790, 826, 829
Bsh1285I CGRYCG 1 cut(s) 152
BsiEI CGRYCG 1 cut(s) 152
BsiSI CCGG 2 cut(s) 114, 788
BslI CCNNNNNNNGG 2 cut(s) 151, 649
BsmAI GTCTC 1 cut(s) 369
Bsp119I TTCGAA 3 cut(s) 135, 317, 858
Bsp1286I GDGCHC 2 cut(s) 129, 256
Bsp13I TCCGGA 1 cut(s) 787
Bsp143I GATC 4 cut(s) 7, 149, 210, 267
Bsp1720I GCTNAGC 1 cut(s) 386
Bsp19I CCATGG 1 cut(s) 691
BspACI CCGC 8 cut(s) 39, 42, 45, 48, 51, 229, 643, 845
BspCNI CTCAG 3 cut(s) 349, 373, 706
BspEI TCCGGA 1 cut(s) 787
BspMI ACCTGC 1 cut(s) 545
BspPI GGATC 3 cut(s) 2, 205, 275
BspQI GCTCTTC 1 cut(s) 29
BspT104I TTCGAA 3 cut(s) 135, 317, 858
BsrBI CCGCTC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 92
BsrI ACTGG 1 cut(s) 749
BssECI CCNNGG 1 cut(s) 691
BssMI GATC 4 cut(s) 7, 149, 210, 267
BssNI GRCGYC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 691
Bst2UI CCWGG 1 cut(s) 508
Bst4CI ACNGT 3 cut(s) 16, 640, 665
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 29
BstBI TTCGAA 3 cut(s) 135, 317, 858
BstDEI CTNAG 5 cut(s) 336, 343, 381, 386, 714
BstDSI CCRYGG 1 cut(s) 691
BstH2I RGCGCY 1 cut(s) 602
BstHHI GCGC 2 cut(s) 460, 601
BstKTI GATC 4 cut(s) 10, 152, 213, 270
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 4 cut(s) 7, 149, 210, 267
BstMCI CGRYCG 1 cut(s) 152
BstMWI GCNNNNNNNGC 6 cut(s) 45, 48, 260, 353, 803, 809
BstNI CCWGG 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 506
BstSLI GKGCMC 1 cut(s) 129
BstV1I GCAGC 4 cut(s) 247, 790, 826, 829
BstV2I GAAGAC 3 cut(s) 321, 434, 746
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 691
BtgZI GCGATG 1 cut(s) 419
BtsIMutI CAGTG 2 cut(s) 219, 378
BveI ACCTGC 1 cut(s) 545
CfoI GCGC 2 cut(s) 460, 601
CseI GACGC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 866
CviAII CATG 1 cut(s) 692
CviQI GTAC 1 cut(s) 866
DdeI CTNAG 5 cut(s) 336, 343, 381, 386, 714
DpnI GATC 4 cut(s) 9, 151, 212, 269
DpnII GATC 4 cut(s) 7, 149, 210, 267
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
EciI GGCGGA 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 691
Eco24I GRGCYC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 506
EcoT14I CCWWGG 1 cut(s) 691
EcoT38I GRGCYC 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 691
FaeI CATG 1 cut(s) 695
FaiI YATR 8 cut(s) 160, 371, 416, 476, 489, 693, 837, 873
FalI AAGNNNNNCTT 2 cut(s) 578, 610
FatI CATG 1 cut(s) 691
FauI CCCGC 1 cut(s) 44
Fnu4HI GCNGC 8 cut(s) 40, 43, 46, 49, 261, 804, 840, 843
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 8 cut(s) 40, 43, 46, 49, 261, 804, 840, 843
FspBI CTAG 1 cut(s) 542
GlaI GCGC 2 cut(s) 459, 600
GluI GCNGC 8 cut(s) 40, 43, 46, 49, 261, 804, 840, 843
HaeII RGCGCY 1 cut(s) 602
HapII CCGG 2 cut(s) 114, 788
HgaI GACGC 1 cut(s) 68
HhaI GCGC 2 cut(s) 460, 601
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 1 cut(s) 695
Hin6I GCGC 2 cut(s) 458, 599
HinP1I GCGC 2 cut(s) 458, 599
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HindIII AAGCTT 2 cut(s) 201, 795
HinfI GANTC 3 cut(s) 69, 94, 467
HpaI GTTAAC 1 cut(s) 513
HpaII CCGG 2 cut(s) 114, 788
Hpy166II GTNNAC 2 cut(s) 19, 513
Hpy188I TCNGA 4 cut(s) 58, 74, 244, 272
Hpy188III TCNNGA 4 cut(s) 66, 98, 482, 788
Hpy8I GTNNAC 2 cut(s) 19, 513
Hpy99I CGWCG 2 cut(s) 31, 34
HpyCH4III ACNGT 3 cut(s) 16, 640, 665
HpyCH4IV ACGT 2 cut(s) 29, 321
HpyCH4V TGCA 2 cut(s) 554, 871
HpyF10VI GCNNNNNNNGC 6 cut(s) 45, 48, 260, 353, 803, 809
HpyF3I CTNAG 5 cut(s) 336, 343, 381, 386, 714
HpySE526I ACGT 2 cut(s) 29, 321
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 1 cut(s) 695
HspAI GCGC 2 cut(s) 458, 599
Kpn2I TCCGGA 1 cut(s) 787
KspAI GTTAAC 1 cut(s) 513
Kzo9I GATC 4 cut(s) 7, 149, 210, 267
LguI GCTCTTC 1 cut(s) 29
LpnPI CCDG 8 cut(s) 127, 323, 493, 520, 540, 693, 762, 801
Lsp1109I GCAGC 4 cut(s) 247, 790, 826, 829
LweI GCATC 3 cut(s) 71, 541, 594
MaeI CTAG 1 cut(s) 542
MaeII ACGT 2 cut(s) 29, 321
MaeIII GTNAC 1 cut(s) 671
MalI GATC 4 cut(s) 9, 151, 212, 269
MbiI CCGCTC 1 cut(s) 39
MboI GATC 4 cut(s) 7, 149, 210, 267
MboII GAAGA 8 cut(s) 46, 321, 439, 557, 598, 748, 751, 872
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 2 cut(s) 129, 256
MluCI AATT 2 cut(s) 358, 728
MlyI GAGTC 2 cut(s) 88, 476
MmeI TCCRAC 2 cut(s) 35, 685
MroI TCCGGA 1 cut(s) 787
MseI TTAA 3 cut(s) 512, 648, 660
MspI CCGG 2 cut(s) 114, 788
MspR9I CCNGG 1 cut(s) 508
MvaI CCWGG 1 cut(s) 508
MwoI GCNNNNNNNGC 6 cut(s) 45, 48, 260, 353, 803, 809
NcoI CCATGG 1 cut(s) 691
NdeII GATC 4 cut(s) 7, 149, 210, 267
NlaIII CATG 1 cut(s) 695
NspV TTCGAA 3 cut(s) 135, 317, 858
PciSI GCTCTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 69
PkrI GCNGC 8 cut(s) 41, 44, 47, 50, 262, 805, 841, 844
Ple19I CGATCG 1 cut(s) 152
PleI GAGTC 2 cut(s) 88, 475
PpsI GAGTC 2 cut(s) 88, 475
Psp6I CCWGG 1 cut(s) 506
PspGI CCWGG 1 cut(s) 506
PsuI RGATCY 1 cut(s) 210
PvuI CGATCG 1 cut(s) 152
RsaI GTAC 1 cut(s) 867
RsaNI GTAC 1 cut(s) 866
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 3 cut(s) 512, 648, 660
SatI GCNGC 8 cut(s) 40, 43, 46, 49, 261, 804, 840, 843
Sau3AI GATC 4 cut(s) 7, 149, 210, 267
SchI GAGTC 2 cut(s) 88, 476
ScrFI CCNGG 1 cut(s) 508
SduI GDGCHC 2 cut(s) 129, 256
SfaNI GCATC 3 cut(s) 71, 541, 594
SfuI TTCGAA 3 cut(s) 135, 317, 858
SmlI CTYRAG 3 cut(s) 96, 198, 421
SmoI CTYRAG 3 cut(s) 96, 198, 421
Sse9I AATT 2 cut(s) 358, 728
SsiI CCGC 8 cut(s) 39, 42, 45, 48, 51, 229, 643, 845
SspMI CTAG 1 cut(s) 542
StyD4I CCNGG 1 cut(s) 506
StyI CCWWGG 1 cut(s) 691
TaaI ACNGT 3 cut(s) 16, 640, 665
TaiI ACGT 2 cut(s) 32, 324
TaqI TCGA 8 cut(s) 32, 67, 135, 148, 317, 493, 816, 858
TaqII GACCGA 1 cut(s) 20
TasI AATT 2 cut(s) 358, 728
TatI WGTACW 1 cut(s) 865
TauI GCSGC 4 cut(s) 42, 45, 48, 51
TfiI GAWTC 1 cut(s) 69
Tru1I TTAA 3 cut(s) 512, 648, 660
Tru9I TTAA 3 cut(s) 512, 648, 660
TscAI CASTG 2 cut(s) 226, 385
TseI GCWGC 4 cut(s) 260, 803, 839, 842
TspRI CASTG 2 cut(s) 226, 385
XspI CTAG 1 cut(s) 542
ZraI GACGTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.