Rroxscaffold_2G00118280

HAUS augmin-like complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012064
Physical Location & Seq
Forward (+)
49564093 .. 49573959
9867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00118280.1

Sequence Viewer

Length: 1017 bp
ATGAGCGATTCGTCGTCAGTGAACGAAACGGCGTCGTCGAAGGGGACGGACGCGTCGCGAATCGGAGAGGTGAAGCAATGGCTGGCTCAGGAATTCTCCCAAGCCGGCAAACAAGTCCCCGATTTCGAATACACCCCTCGTTCCGTGGCATATTTACGCAACCTTGCCACTCTTTCCCAGTCCCAGACTCAAGCCTCCAAGATCCTCGCCTCCGATTTCCGCCTCAAAGCCTCCGAGTACCGCTCCCAAGCTGCCAGGATTCGGGAGATCTTGGAGAGTGTGGGGTTAGCCCAGGAGGGTTTGCCGTCCAATGTGGTTTCTTCTGCTCACGTCTTGGCCAATGTCGCCAATTTATTGAATATCAGAGATACTGAGCTAAGCAGGTGCGTTGCTTTCTCACATAACCCTAATTGTCTTCATTGTAATACTTGGCTGAATCATGAAAATTTCGGTTTTAGTTTTCTTGTGGCCATGGGGGATATATCTTTGAGGAAGACTGGCGTGGAGGAAAAGAGGGCTAAAGCCCAAAAAGAGTCCAAAGTTCTTCTTGATTATACTCGAAAGGCTATTGCCAGAACACTCGGCCAACTAGAAGATGATGTAGGTCAATGTGAAGCGCATATTGATTATTGGAAGACCAATTTGGGGGTGATGGTGGGCAAGGAGAAGCAATACAATCTACAGACTGCCAACTATAAGCCAATTAAATTAACAAAAATTGACAATATAAAAATGAGTTACTGTGGTAGCAAAGTAGCAAATCATAAACAGACTACTCTTACCCGTGTGGGCTATACCCCAGAGATTAGCCATGGGGTATTGGTTGAATTGGCTGAGCACCGGAAGGAATTAGAGAAGAAGACAAAACCTGTTCTTGATACTTTGCGAAGCTACCAAGACTTGCCTCCGGATAAAGCTTTGGCTGCTTTAGCAATTGAGGACAAGAAAAGACAGTATGCTGCTGCTGAGAAGTATCTTGAAGACGTGTTGCATTCAGCTCTTGCCACTTCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0015630 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

37.66

Weight (kDa)

8.61

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS1 PF25762 23 - 303 2.7e-59 HAUS augmin-like complex subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41350 AT2G41350
fragaria_vesca FvH4_6g25170
malus_domestica MD12G1092800.v1.1 MD14G1084500.v1.1
prunus_persica Prupe.7G043700_v2.0.a1
pyrus_communis pycom12g07760 pycom14g07420
rosa_chinensis RchiOBHm_Chr2g0125061
rosa_laevigata RLG00000018846
rosa_multiflora Rmu_sc0003505.1_g000017
rosa_roxburghii Rroxscaffold_2G00118280 Rroxscaffold_2G00118730
rosa_rugosa Rorug02G0255300
rosa_samantha Rh2AG313800 Rh2BG322100 Rh2CG304400 Rh2DG340500
rosa_wichuraiana Rw2G025390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 372
AasI GACNNNNNNGTC 1 cut(s) 52
Acc36I ACCTGC 1 cut(s) 372
AccBSI CCGCTC 1 cut(s) 243
AccII CGCG 2 cut(s) 53, 58
AccIII TCCGGA 1 cut(s) 907
AciI CCGC 2 cut(s) 220, 241
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 3 cut(s) 336, 468, 583
AcsI RAATTY 2 cut(s) 92, 445
AcuI CTGAAG 1 cut(s) 993
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 2 cut(s) 261, 645
AflIII ACRYGT 2 cut(s) 51, 984
AgsI TTSAA 3 cut(s) 358, 827, 980
AjiI CACGTC 2 cut(s) 331, 985
AjnI CCWGG 2 cut(s) 254, 291
AjuI GAANNNNNNNTTGG 2 cut(s) 626, 658
AluBI AGCT 5 cut(s) 251, 376, 891, 917, 998
AluI AGCT 5 cut(s) 251, 376, 891, 917, 998
Alw21I GWGCWC 1 cut(s) 840
AlwI GGATC 1 cut(s) 196
Aor13HI TCCGGA 1 cut(s) 907
AoxI GGCC 3 cut(s) 336, 468, 583
ApeKI GCWGC 4 cut(s) 251, 923, 959, 962
ApoI RAATTY 2 cut(s) 92, 445
AspLEI GCGC 1 cut(s) 619
AsuHPI GGTGA 2 cut(s) 82, 661
AsuII TTCGAA 1 cut(s) 126
BalI TGGCCA 2 cut(s) 338, 470
BbsI GAAGAC 5 cut(s) 407, 500, 641, 866, 987
Bbv12I GWGCWC 1 cut(s) 840
BbvI GCAGC 4 cut(s) 238, 910, 946, 949
BccI CCATC 1 cut(s) 646
BceAI ACGGC 2 cut(s) 45, 289
BciT130I CCWGG 2 cut(s) 256, 293
BfaI CTAG 1 cut(s) 590
BfmI CTRYAG 1 cut(s) 680
BfuAI ACCTGC 1 cut(s) 372
BglII AGATCT 1 cut(s) 267
BisI GCNGC 4 cut(s) 252, 924, 960, 963
BlpI GCTNAGC 2 cut(s) 377, 834
BlsI GCNGC 4 cut(s) 253, 925, 961, 964
Bme1390I CCNGG 2 cut(s) 256, 293
BmgBI CACGTC 2 cut(s) 331, 985
BmrFI CCNGG 2 cut(s) 256, 293
BmrI ACTGGG 1 cut(s) 172
BmuI ACTGGG 1 cut(s) 172
BpiI GAAGAC 5 cut(s) 407, 500, 641, 866, 987
BplI GAGNNNNNCTC 2 cut(s) 227, 259
Bpu10I CCTNAGC 1 cut(s) 87
Bpu1102I GCTNAGC 2 cut(s) 377, 834
Bpu14I TTCGAA 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 4 cut(s) 144, 291, 471, 811
BsaWI WCCGGW 2 cut(s) 840, 907
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 645
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 178, 502
Bse3DI GCAATG 1 cut(s) 83
BseAI TCCGGA 1 cut(s) 907
BseBI CCWGG 2 cut(s) 256, 293
BseDI CCNNGG 4 cut(s) 144, 291, 471, 811
BseLI CCNNNNNNNGG 2 cut(s) 261, 645
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 4 cut(s) 101, 363, 825, 957
BseNI ACTGG 2 cut(s) 178, 502
BseXI GCAGC 4 cut(s) 238, 910, 946, 949
Bsh1236I CGCG 2 cut(s) 53, 58
BshFI GGCC 3 cut(s) 338, 470, 585
BsiHKAI GWGCWC 1 cut(s) 840
BsiSI CCGG 3 cut(s) 105, 841, 908
BslFI GGGAC 3 cut(s) 58, 101, 166
BslI CCNNNNNNNGG 2 cut(s) 261, 645
BsmFI GGGAC 3 cut(s) 58, 101, 166
BsmI GAATGC 1 cut(s) 991
BsnI GGCC 3 cut(s) 338, 470, 585
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 840
Bsp13I TCCGGA 1 cut(s) 907
Bsp143I GATC 2 cut(s) 201, 267
Bsp1720I GCTNAGC 2 cut(s) 377, 834
Bsp19I CCATGG 2 cut(s) 471, 811
Bsp68I TCGCGA 1 cut(s) 58
BspACI CCGC 2 cut(s) 220, 241
BspANI GGCC 3 cut(s) 338, 470, 585
BspCNI CTCAG 4 cut(s) 100, 364, 826, 958
BspEI TCCGGA 1 cut(s) 907
BspFNI CGCG 2 cut(s) 53, 58
BspHI TCATGA 1 cut(s) 439
BspMI ACCTGC 1 cut(s) 372
BspPI GGATC 1 cut(s) 196
BspT104I TTCGAA 1 cut(s) 126
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 2 cut(s) 178, 502
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 4 cut(s) 144, 291, 471, 811
BssMI GATC 2 cut(s) 201, 267
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 2 cut(s) 471, 811
Bst2UI CCWGG 2 cut(s) 256, 293
Bst4CI ACNGT 2 cut(s) 743, 954
BstACI GRCGYC 1 cut(s) 32
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 84, 106
BstDEI CTNAG 5 cut(s) 87, 372, 377, 834, 966
BstDSI CCRYGG 3 cut(s) 144, 471, 811
BstFNI CGCG 2 cut(s) 53, 58
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 2 cut(s) 204, 270
BstMBI GATC 2 cut(s) 201, 267
BstMWI GCNNNNNNNGC 3 cut(s) 344, 923, 929
BstNI CCWGG 2 cut(s) 256, 293
BstSCI CCNGG 2 cut(s) 254, 291
BstSFI CTRYAG 1 cut(s) 680
BstUI CGCG 2 cut(s) 53, 58
BstV1I GCAGC 4 cut(s) 238, 910, 946, 949
BstV2I GAAGAC 5 cut(s) 407, 500, 641, 866, 987
BstX2I RGATCY 2 cut(s) 201, 267
BstYI RGATCY 2 cut(s) 201, 267
BsuRI GGCC 3 cut(s) 338, 470, 585
BtgI CCRYGG 3 cut(s) 144, 471, 811
BtrI CACGTC 2 cut(s) 331, 985
BtsIMutI CAGTG 1 cut(s) 24
BtuMI TCGCGA 1 cut(s) 58
BveI ACCTGC 1 cut(s) 372
Cac8I GCNNGC 2 cut(s) 84, 106
CciI TCATGA 1 cut(s) 439
CfoI GCGC 1 cut(s) 619
Cfr10I RCCGGY 1 cut(s) 104
CseI GACGC 3 cut(s) 21, 42, 59
Csp6I GTAC 1 cut(s) 238
CviAII CATG 3 cut(s) 440, 472, 812
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 5 cut(s) 87, 372, 377, 834, 966
DpnI GATC 2 cut(s) 203, 269
DpnII GATC 2 cut(s) 201, 267
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
EaeI YGGCCR 3 cut(s) 336, 468, 583
EciI GGCGGA 1 cut(s) 209
Eco130I CCWWGG 2 cut(s) 471, 811
Eco57I CTGAAG 1 cut(s) 993
EcoRI GAATTC 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 254, 291
EcoT14I CCWWGG 2 cut(s) 471, 811
ErhI CCWWGG 2 cut(s) 471, 811
FaeI CATG 3 cut(s) 443, 475, 815
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FaqI GGGAC 3 cut(s) 58, 101, 166
FatI CATG 3 cut(s) 439, 471, 811
Fnu4HI GCNGC 4 cut(s) 252, 924, 960, 963
Fsp4HI GCNGC 4 cut(s) 252, 924, 960, 963
FspBI CTAG 1 cut(s) 590
GlaI GCGC 1 cut(s) 618
GluI GCNGC 4 cut(s) 252, 924, 960, 963
HaeIII GGCC 3 cut(s) 338, 470, 585
HapII CCGG 3 cut(s) 105, 841, 908
HgaI GACGC 3 cut(s) 21, 42, 59
HhaI GCGC 1 cut(s) 619
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 3 cut(s) 443, 475, 815
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HindIII AAGCTT 1 cut(s) 915
HinfI GANTC 6 cut(s) 8, 60, 187, 259, 436, 533
HpaII CCGG 3 cut(s) 105, 841, 908
HphI GGTGA 2 cut(s) 82, 661
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 5 cut(s) 65, 214, 235, 365, 1012
Hpy188III TCNNGA 8 cut(s) 57, 89, 263, 440, 548, 875, 908, 977
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 4 cut(s) 16, 37, 40, 58
HpyAV CCTTC 2 cut(s) 34, 838
HpyCH4III ACNGT 2 cut(s) 743, 954
HpyCH4IV ACGT 2 cut(s) 330, 984
HpyCH4V TGCA 1 cut(s) 991
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 923, 929
HpyF3I CTNAG 5 cut(s) 87, 372, 377, 834, 966
HpySE526I ACGT 2 cut(s) 330, 984
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 3 cut(s) 443, 475, 815
HspAI GCGC 1 cut(s) 617
Kpn2I TCCGGA 1 cut(s) 907
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 201, 267
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 4 cut(s) 238, 910, 946, 949
MaeI CTAG 1 cut(s) 590
MaeII ACGT 2 cut(s) 330, 984
MaeIII GTNAC 1 cut(s) 737
MalI GATC 2 cut(s) 203, 269
MbiI CCGCTC 1 cut(s) 243
MboI GATC 2 cut(s) 201, 267
MboII GAAGA 9 cut(s) 312, 407, 505, 536, 605, 646, 868, 871, 992
MfeI CAATTG 1 cut(s) 933
MflI RGATCY 2 cut(s) 201, 267
MhlI GDGCHC 1 cut(s) 840
MlsI TGGCCA 2 cut(s) 338, 470
MluI ACGCGT 1 cut(s) 51
MluNI TGGCCA 2 cut(s) 338, 470
MlyI GAGTC 2 cut(s) 181, 542
Mox20I TGGCCA 2 cut(s) 338, 470
MroI TCCGGA 1 cut(s) 907
MroNI GCCGGC 1 cut(s) 104
MscI TGGCCA 2 cut(s) 338, 470
MseI TTAA 2 cut(s) 705, 710
Msp20I TGGCCA 2 cut(s) 338, 470
MspI CCGG 3 cut(s) 105, 841, 908
MspR9I CCNGG 2 cut(s) 256, 293
MunI CAATTG 1 cut(s) 933
Mva1269I GAATGC 1 cut(s) 991
MvaI CCWGG 2 cut(s) 256, 293
MvnI CGCG 2 cut(s) 53, 58
MwoI GCNNNNNNNGC 3 cut(s) 344, 923, 929
NaeI GCCGGC 1 cut(s) 106
NcoI CCATGG 2 cut(s) 471, 811
NdeII GATC 2 cut(s) 201, 267
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 3 cut(s) 443, 475, 815
NmeAIII GCCGAG 1 cut(s) 561
NruI TCGCGA 1 cut(s) 58
NspV TTCGAA 1 cut(s) 126
PagI TCATGA 1 cut(s) 439
PaqCI CACCTGC 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 991
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 4 cut(s) 8, 60, 259, 436
PkrI GCNGC 4 cut(s) 253, 925, 961, 964
PleI GAGTC 2 cut(s) 181, 541
PpsI GAGTC 2 cut(s) 181, 541
Psp6I CCWGG 2 cut(s) 254, 291
PspGI CCWGG 2 cut(s) 254, 291
PsuI RGATCY 2 cut(s) 201, 267
RruI TCGCGA 1 cut(s) 58
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SaqAI TTAA 2 cut(s) 705, 710
SatI GCNGC 4 cut(s) 252, 924, 960, 963
Sau3AI GATC 2 cut(s) 201, 267
SchI GAGTC 2 cut(s) 181, 542
ScrFI CCNGG 2 cut(s) 256, 293
SduI GDGCHC 1 cut(s) 840
SfcI CTRYAG 1 cut(s) 680
SfuI TTCGAA 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
SsiI CCGC 2 cut(s) 220, 241
SspMI CTAG 1 cut(s) 590
StyD4I CCNGG 2 cut(s) 254, 291
StyI CCWWGG 2 cut(s) 471, 811
TaaI ACNGT 2 cut(s) 743, 954
TaiI ACGT 2 cut(s) 333, 987
TaqI TCGA 3 cut(s) 38, 126, 559
TfiI GAWTC 4 cut(s) 8, 60, 259, 436
Tru1I TTAA 2 cut(s) 705, 710
Tru9I TTAA 2 cut(s) 705, 710
TscAI CASTG 1 cut(s) 24
TseI GCWGC 4 cut(s) 251, 923, 959, 962
TspDTI ATGAA 2 cut(s) 407, 456
TspGWI ACGGA 2 cut(s) 62, 133
TspRI CASTG 1 cut(s) 24
XapI RAATTY 2 cut(s) 92, 445
XspI CTAG 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.