Rmu_sc0003505.1_g000017

HAUS augmin-like complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003505.1
OG0012064
Physical Location & Seq
Reverse (-)
85373 .. 89257
3885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003505.1_g000017.1.cds

Sequence Viewer

Length: 1110 bp
atgagcgattcgtcgtcagtgaacgaaacggcgtcgtcgaaggggacggacgcttcccgaatcggagaggtgaagcaatggctggctcaggaattctcccaagccggcaaacaagtccccgatttcgaatacacccctcgttccgtggcatatttacgcaaccttgccactctttcccagtcccagactcaagcctccaagatcctcgcctccgatttccgcctcaaagcctccgagtaccgctcccaagctgccaggattcgcgagatcttggagagtgtggggttagcccaggagggtttgccgtccaatgtggtttcctctgctcacgtcttggccaatgtcgccaatttattgaatatcagagatactgagctaagcagttttcttgtggccatgggggatatatctttgaggaagactggcgtggaggagaagagggctaaagcccaaaaggagtccaaagttcttcttgattatactcgaaaggctattgccaggttaacttatttgaaaagaacactcggccaactagaagatgatgtaggccaatgtgaagcgcacattgattattggaagaccaatttgggggtgatggtgggcaaggagaagcaatacaatctccagactgccaactataagactactcttacccgtgtgggctataccccagagattagccatggggtattggttgaattggctgagcaccggaaggaattagagaagaagacaaaacctgttcttgatactttgcgaagctaccaagacttgcctccggataaagctttggctgctttagcaattgaggacaagaaaagacagtatgctgctgctgagaagtatctcgaagacgtgttgcattcagctcttgccacttcagacacaagttgtggtctcatgatgctcactattgtggacaaatctttggttacttatctcgtttatattgatcatctcaggctcatgattttcttattgccagaatatgtgttgactcttgtgtccttccttctggtcgggttttggtctagaaagaatcttaatgacctggaagttgaggaactcatctttctgtcatctcaaattgagaagaagagggaaggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0015630 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

369

Amino Acids

41.4

Weight (kDa)

7.03

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41350 AT2G41350
fragaria_vesca FvH4_6g25170
malus_domestica MD12G1092800.v1.1 MD14G1084500.v1.1
prunus_persica Prupe.7G043700_v2.0.a1
pyrus_communis pycom12g07760 pycom14g07420
rosa_chinensis RchiOBHm_Chr2g0125061
rosa_laevigata RLG00000018846
rosa_multiflora Rmu_sc0003505.1_g000017
rosa_roxburghii Rroxscaffold_2G00118280 Rroxscaffold_2G00118730
rosa_rugosa Rorug02G0255300
rosa_samantha Rh2AG313800 Rh2BG322100 Rh2CG304400 Rh2DG340500
rosa_wichuraiana Rw2G025390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1003
AccBSI CCGCTC 1 cut(s) 243
AccII CGCG 1 cut(s) 264
AccIII TCCGGA 1 cut(s) 778
AciI CCGC 2 cut(s) 220, 241
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 3 cut(s) 336, 393, 526
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 864
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 588
AflIII ACRYGT 1 cut(s) 855
AgsI TTSAA 3 cut(s) 358, 514, 698
AjiI CACGTC 2 cut(s) 331, 856
AjnI CCWGG 4 cut(s) 254, 291, 497, 1050
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AleI CACNNNNGTG 1 cut(s) 914
AluBI AGCT 5 cut(s) 251, 376, 762, 788, 869
AluI AGCT 5 cut(s) 251, 376, 762, 788, 869
Alw21I GWGCWC 1 cut(s) 711
Alw26I GTCTC 1 cut(s) 902
AlwI GGATC 1 cut(s) 196
Aor13HI TCCGGA 1 cut(s) 778
AoxI GGCC 4 cut(s) 336, 393, 526, 547
ApeKI GCWGC 4 cut(s) 251, 794, 830, 833
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 1 cut(s) 562
AsuHPI GGTGA 2 cut(s) 82, 604
AsuII TTCGAA 1 cut(s) 126
BalI TGGCCA 2 cut(s) 338, 395
BbsI GAAGAC 4 cut(s) 425, 584, 737, 858
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 4 cut(s) 238, 781, 817, 820
BccI CCATC 1 cut(s) 589
BceAI ACGGC 2 cut(s) 45, 289
BciT130I CCWGG 4 cut(s) 256, 293, 499, 1052
BclI TGATCA 1 cut(s) 952
BcoDI GTCTC 1 cut(s) 902
BfaI CTAG 2 cut(s) 533, 1032
BglII AGATCT 1 cut(s) 267
BisI GCNGC 4 cut(s) 252, 795, 831, 834
BlpI GCTNAGC 2 cut(s) 377, 705
BlsI GCNGC 4 cut(s) 253, 796, 832, 835
Bme1390I CCNGG 4 cut(s) 256, 293, 499, 1052
BmgBI CACGTC 2 cut(s) 331, 856
BmrFI CCNGG 4 cut(s) 256, 293, 499, 1052
BmrI ACTGGG 1 cut(s) 172
BmsI GCATC 1 cut(s) 894
BmuI ACTGGG 1 cut(s) 172
BpiI GAAGAC 4 cut(s) 425, 584, 737, 858
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 1 cut(s) 608
Bpu10I CCTNAGC 1 cut(s) 87
Bpu1102I GCTNAGC 2 cut(s) 377, 705
Bpu14I TTCGAA 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 902
BsaJI CCNNGG 4 cut(s) 144, 291, 396, 682
BsaWI WCCGGW 2 cut(s) 711, 778
Bsc4I CCNNNNNNNGG 1 cut(s) 588
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 178, 427
Bse3DI GCAATG 1 cut(s) 83
BseAI TCCGGA 1 cut(s) 778
BseBI CCWGG 4 cut(s) 256, 293, 499, 1052
BseDI CCNNGG 4 cut(s) 144, 291, 396, 682
BseLI CCNNNNNNNGG 1 cut(s) 588
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 5 cut(s) 101, 363, 696, 828, 973
BseNI ACTGG 2 cut(s) 178, 427
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 4 cut(s) 238, 781, 817, 820
Bsh1236I CGCG 1 cut(s) 264
BshFI GGCC 4 cut(s) 338, 395, 528, 549
BsiHKAI GWGCWC 1 cut(s) 711
BsiSI CCGG 3 cut(s) 105, 712, 779
BslFI GGGAC 3 cut(s) 58, 101, 166
BslI CCNNNNNNNGG 1 cut(s) 588
BsmAI GTCTC 1 cut(s) 902
BsmFI GGGAC 3 cut(s) 58, 101, 166
BsmI GAATGC 1 cut(s) 862
BsnI GGCC 4 cut(s) 338, 395, 528, 549
Bso31I GGTCTC 1 cut(s) 902
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 711
Bsp13I TCCGGA 1 cut(s) 778
Bsp143I GATC 3 cut(s) 201, 267, 952
Bsp1720I GCTNAGC 2 cut(s) 377, 705
Bsp19I CCATGG 2 cut(s) 396, 682
Bsp68I TCGCGA 1 cut(s) 264
BspACI CCGC 2 cut(s) 220, 241
BspANI GGCC 4 cut(s) 338, 395, 528, 549
BspCNI CTCAG 5 cut(s) 100, 364, 697, 829, 972
BspEI TCCGGA 1 cut(s) 778
BspFNI CGCG 1 cut(s) 264
BspHI TCATGA 2 cut(s) 900, 966
BspPI GGATC 1 cut(s) 196
BspT104I TTCGAA 1 cut(s) 126
BspTNI GGTCTC 1 cut(s) 902
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 2 cut(s) 178, 427
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 4 cut(s) 144, 291, 396, 682
BssMI GATC 3 cut(s) 201, 267, 952
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 2 cut(s) 396, 682
Bst2UI CCWGG 4 cut(s) 256, 293, 499, 1052
Bst4CI ACNGT 1 cut(s) 825
Bst6I CTCTTC 2 cut(s) 431, 1091
BstACI GRCGYC 1 cut(s) 32
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 84, 106
BstDEI CTNAG 6 cut(s) 87, 372, 377, 705, 837, 959
BstDSI CCRYGG 3 cut(s) 144, 396, 682
BstFNI CGCG 1 cut(s) 264
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 3 cut(s) 204, 270, 955
BstMAI GTCTC 1 cut(s) 902
BstMBI GATC 3 cut(s) 201, 267, 952
BstMWI GCNNNNNNNGC 3 cut(s) 344, 794, 800
BstNI CCWGG 4 cut(s) 256, 293, 499, 1052
BstSCI CCNGG 4 cut(s) 254, 291, 497, 1050
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 4 cut(s) 238, 781, 817, 820
BstV2I GAAGAC 4 cut(s) 425, 584, 737, 858
BstX2I RGATCY 2 cut(s) 201, 267
BstYI RGATCY 2 cut(s) 201, 267
BsuRI GGCC 4 cut(s) 338, 395, 528, 549
BtgI CCRYGG 3 cut(s) 144, 396, 682
BtrI CACGTC 2 cut(s) 331, 856
BtsIMutI CAGTG 1 cut(s) 24
BtuMI TCGCGA 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 84, 106
CciI TCATGA 2 cut(s) 900, 966
CfoI GCGC 1 cut(s) 562
Cfr10I RCCGGY 1 cut(s) 104
CseI GACGC 2 cut(s) 21, 59
Csp6I GTAC 1 cut(s) 238
CviAII CATG 4 cut(s) 397, 683, 901, 967
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 6 cut(s) 87, 372, 377, 705, 837, 959
DpnI GATC 3 cut(s) 203, 269, 954
DpnII GATC 3 cut(s) 201, 267, 952
DrdI GACNNNNNNGTC 1 cut(s) 1003
DseDI GACNNNNNNGTC 1 cut(s) 1003
EaeI YGGCCR 3 cut(s) 336, 393, 526
Eam1104I CTCTTC 2 cut(s) 431, 1091
EarI CTCTTC 2 cut(s) 431, 1091
EciI GGCGGA 1 cut(s) 209
Eco130I CCWWGG 2 cut(s) 396, 682
Eco31I GGTCTC 1 cut(s) 902
Eco57I CTGAAG 1 cut(s) 864
EcoRI GAATTC 1 cut(s) 92
EcoRII CCWGG 4 cut(s) 254, 291, 497, 1050
EcoT14I CCWWGG 2 cut(s) 396, 682
ErhI CCWWGG 2 cut(s) 396, 682
FaeI CATG 4 cut(s) 400, 686, 904, 970
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FaqI GGGAC 3 cut(s) 58, 101, 166
FatI CATG 4 cut(s) 396, 682, 900, 966
FbaI TGATCA 1 cut(s) 952
Fnu4HI GCNGC 4 cut(s) 252, 795, 831, 834
Fsp4HI GCNGC 4 cut(s) 252, 795, 831, 834
FspBI CTAG 2 cut(s) 533, 1032
GlaI GCGC 1 cut(s) 561
GluI GCNGC 4 cut(s) 252, 795, 831, 834
GsuI CTGGAG 1 cut(s) 608
HaeIII GGCC 4 cut(s) 338, 395, 528, 549
HapII CCGG 3 cut(s) 105, 712, 779
HgaI GACGC 2 cut(s) 21, 59
HhaI GCGC 1 cut(s) 562
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 4 cut(s) 400, 686, 904, 970
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HincII GTYRAC 2 cut(s) 504, 996
HindII GTYRAC 2 cut(s) 504, 996
HindIII AAGCTT 1 cut(s) 786
HinfI GANTC 7 cut(s) 8, 60, 187, 259, 458, 997, 1039
HpaI GTTAAC 1 cut(s) 504
HpaII CCGG 3 cut(s) 105, 712, 779
HphI GGTGA 2 cut(s) 82, 604
Hpy166II GTNNAC 4 cut(s) 22, 504, 919, 996
Hpy188I TCNGA 5 cut(s) 65, 214, 235, 365, 883
Hpy8I GTNNAC 4 cut(s) 22, 504, 919, 996
Hpy99I CGWCG 3 cut(s) 16, 37, 40
HpyAV CCTTC 5 cut(s) 34, 709, 1018, 1022, 1097
HpyCH4III ACNGT 1 cut(s) 825
HpyCH4IV ACGT 2 cut(s) 330, 855
HpyCH4V TGCA 1 cut(s) 862
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 794, 800
HpyF3I CTNAG 6 cut(s) 87, 372, 377, 705, 837, 959
HpySE526I ACGT 2 cut(s) 330, 855
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 4 cut(s) 400, 686, 904, 970
HspAI GCGC 1 cut(s) 560
Kpn2I TCCGGA 1 cut(s) 778
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 952
KspAI GTTAAC 1 cut(s) 504
Kzo9I GATC 3 cut(s) 201, 267, 952
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 4 cut(s) 238, 781, 817, 820
LweI GCATC 1 cut(s) 894
MaeI CTAG 2 cut(s) 533, 1032
MaeII ACGT 2 cut(s) 330, 855
MaeIII GTNAC 1 cut(s) 931
MalI GATC 3 cut(s) 203, 269, 954
MbiI CCGCTC 1 cut(s) 243
MboI GATC 3 cut(s) 201, 267, 952
MfeI CAATTG 1 cut(s) 804
MflI RGATCY 2 cut(s) 201, 267
MhlI GDGCHC 1 cut(s) 711
MlsI TGGCCA 2 cut(s) 338, 395
MluCI AATT 7 cut(s) 92, 349, 583, 698, 719, 804, 1086
MluNI TGGCCA 2 cut(s) 338, 395
MlyI GAGTC 3 cut(s) 181, 467, 991
Mox20I TGGCCA 2 cut(s) 338, 395
MroI TCCGGA 1 cut(s) 778
MroNI GCCGGC 1 cut(s) 104
MscI TGGCCA 2 cut(s) 338, 395
MseI TTAA 2 cut(s) 503, 1044
MslI CAYNNNNRTG 1 cut(s) 914
Msp20I TGGCCA 2 cut(s) 338, 395
MspI CCGG 3 cut(s) 105, 712, 779
MspR9I CCNGG 4 cut(s) 256, 293, 499, 1052
MunI CAATTG 1 cut(s) 804
Mva1269I GAATGC 1 cut(s) 862
MvaI CCWGG 4 cut(s) 256, 293, 499, 1052
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 344, 794, 800
NaeI GCCGGC 1 cut(s) 106
NcoI CCATGG 2 cut(s) 396, 682
NdeII GATC 3 cut(s) 201, 267, 952
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 4 cut(s) 400, 686, 904, 970
NmeAIII GCCGAG 1 cut(s) 504
NruI TCGCGA 1 cut(s) 264
NspV TTCGAA 1 cut(s) 126
OliI CACNNNNGTG 1 cut(s) 914
PagI TCATGA 2 cut(s) 900, 966
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 862
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 4 cut(s) 8, 60, 259, 1039
PkrI GCNGC 4 cut(s) 253, 796, 832, 835
PleI GAGTC 3 cut(s) 181, 466, 991
PpsI GAGTC 3 cut(s) 181, 466, 991
Psp6I CCWGG 4 cut(s) 254, 291, 497, 1050
PspGI CCWGG 4 cut(s) 254, 291, 497, 1050
PsuI RGATCY 2 cut(s) 201, 267
RruI TCGCGA 1 cut(s) 264
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 914
SaqAI TTAA 2 cut(s) 503, 1044
SatI GCNGC 4 cut(s) 252, 795, 831, 834
Sau3AI GATC 3 cut(s) 201, 267, 952
SchI GAGTC 3 cut(s) 181, 467, 991
ScrFI CCNGG 4 cut(s) 256, 293, 499, 1052
SduI GDGCHC 1 cut(s) 711
SfaNI GCATC 1 cut(s) 894
SfuI TTCGAA 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 914
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
Sse9I AATT 7 cut(s) 92, 349, 583, 698, 719, 804, 1086
SsiI CCGC 2 cut(s) 220, 241
SspMI CTAG 2 cut(s) 533, 1032
StyD4I CCNGG 4 cut(s) 254, 291, 497, 1050
StyI CCWWGG 2 cut(s) 396, 682
TaaI ACNGT 1 cut(s) 825
TaiI ACGT 2 cut(s) 333, 858
TaqI TCGA 4 cut(s) 38, 126, 484, 849
TasI AATT 7 cut(s) 92, 349, 583, 698, 719, 804, 1086
TfiI GAWTC 4 cut(s) 8, 60, 259, 1039
Tru1I TTAA 2 cut(s) 503, 1044
Tru9I TTAA 2 cut(s) 503, 1044
TscAI CASTG 1 cut(s) 24
TseI GCWGC 4 cut(s) 251, 794, 830, 833
TspGWI ACGGA 2 cut(s) 62, 133
TspRI CASTG 1 cut(s) 24
XapI RAATTY 1 cut(s) 92
XbaI TCTAGA 1 cut(s) 1031
XspI CTAG 2 cut(s) 533, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.