FvH4_6g25170

HAUS augmin-like complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012064
Physical Location & Seq
Reverse (-)
19081366 .. 19086439
5074 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25170.t1

Sequence Viewer

Length: 876 bp
ATGAGCGAATCATCGGCGGTAAGCGAAACGGCGTCGTCGGCGTCTCGAATCGGAGAGGTAAAGCAATGGCTGGCTCAGGAATTCTCCGTAGCCGGGAAAGAAGTACCCGATTTCGAATACACCCCTCGTTCCGTGGCATATCTACACAACCTTGCCACTCTCTCCCACTCCCACACTCAATCCTCCAAGATCCTCGCCGCCGATTTCCGCCTCAAAGCCTCCGAGTACCGCTCCCAAGCTGCGAGGATCAGGGAGATCTTGGAGGGCGTTGGGTTAGCACACGAGAGTTTGCCCTCCAATGTCGTTTCTTCTGCTCAGGTTTTAGCCAGCGTCGCCAATTTATTGAACATTAGAGACACTGAGCTTAGCAGCTATCTTGTGGCCATTGCGGATATATCTTTGAGGAAGACTGGTGTGGAGGAGAAGAGGGCCAAAGCCCAGAAAGAGTCCAAAGTTCTTCTTGATTATACTCGAAAGGCTATTGCCAGGTTGACTTATTTGAAAAGAACACTCGGCCAATTAGAAGATGACGCAGTTCAATGTGAAGCACATATTGATTACTGGAAGACCAATTTGGGGGTGATGGTGGGTAAGGAGAAGCAGTACAATCAACAGACTGCCAACTATAAGACTACTCTAACCCGTGTGGGATATACCCCAGAGATTAGCCATGGGGTGTTGGTTGAATTGGCTGAACACCGGAAGGAATTAGAGAAGAAGACAAAGCCTGTTCTTGATACTTTGCGAAGCTACCAAGACTTGCCTCCGGATAAAGCTTTGGCTGCTTTAGCAATTGAGGACAAGAAAAGACAGTATGCTGCTGCTGAGGAGTATCTCGAAAACGTGTTGCATTCAGCTCTTGCCACTTCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005819 GO:0005856 GO:0015630 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

32.35

Weight (kDa)

6.73

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS1 PF25762 19 - 256 2.9e-74 HAUS augmin-like complex subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41350 AT2G41350
fragaria_vesca FvH4_6g25170
malus_domestica MD12G1092800.v1.1 MD14G1084500.v1.1
prunus_persica Prupe.7G043700_v2.0.a1
pyrus_communis pycom12g07760 pycom14g07420
rosa_chinensis RchiOBHm_Chr2g0125061
rosa_laevigata RLG00000018846
rosa_multiflora Rmu_sc0003505.1_g000017
rosa_roxburghii Rroxscaffold_2G00118280 Rroxscaffold_2G00118730
rosa_rugosa Rorug02G0255300
rosa_samantha Rh2AG313800 Rh2BG322100 Rh2CG304400 Rh2DG340500
rosa_wichuraiana Rw2G025390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 231
AccIII TCCGGA 1 cut(s) 766
AciI CCGC 5 cut(s) 17, 198, 208, 229, 389
AclWI GGATC 2 cut(s) 184, 254
AcoI YGGCCR 2 cut(s) 381, 514
AcsI RAATTY 1 cut(s) 80
AcuI CTGAAG 1 cut(s) 852
AcyI GRCGYC 2 cut(s) 32, 41
AfaI GTAC 3 cut(s) 105, 227, 605
AfiI CCNNNNNNNGG 2 cut(s) 93, 576
AflIII ACRYGT 1 cut(s) 843
AgsI TTSAA 4 cut(s) 346, 502, 539, 686
AjnI CCWGG 1 cut(s) 485
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 6 cut(s) 239, 364, 372, 750, 776, 857
AluI AGCT 6 cut(s) 239, 364, 372, 750, 776, 857
Alw26I GTCTC 2 cut(s) 48, 348
AlwI GGATC 2 cut(s) 184, 254
Aor13HI TCCGGA 1 cut(s) 766
AoxI GGCC 3 cut(s) 381, 429, 514
ApeKI GCWGC 5 cut(s) 239, 369, 782, 818, 821
ApoI RAATTY 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 429
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 592
AsuII TTCGAA 1 cut(s) 114
BalI TGGCCA 1 cut(s) 383
BauI CACGAG 1 cut(s) 281
BbsI GAAGAC 3 cut(s) 413, 572, 725
BbvCI CCTCAGC 1 cut(s) 825
BbvI GCAGC 5 cut(s) 226, 381, 769, 805, 808
BccI CCATC 1 cut(s) 577
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 487
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 48, 348
BglII AGATCT 1 cut(s) 255
BisI GCNGC 6 cut(s) 198, 240, 370, 783, 819, 822
BlpI GCTNAGC 1 cut(s) 365
BlsI GCNGC 6 cut(s) 199, 241, 371, 784, 820, 823
Bme1390I CCNGG 2 cut(s) 94, 487
BmgT120I GGNCC 1 cut(s) 429
BmrFI CCNGG 2 cut(s) 94, 487
BpiI GAAGAC 3 cut(s) 413, 572, 725
BplI GAGNNNNNCTC 2 cut(s) 215, 247
Bpu10I CCTNAGC 3 cut(s) 75, 315, 825
Bpu1102I GCTNAGC 1 cut(s) 365
Bpu14I TTCGAA 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 94
BsaHI GRCGYC 2 cut(s) 32, 41
BsaJI CCNNGG 2 cut(s) 132, 670
BsaWI WCCGGW 2 cut(s) 699, 766
BsaXI ACNNNNNCTCC 2 cut(s) 587, 617
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 576
Bse1I ACTGG 2 cut(s) 415, 566
Bse3DI GCAATG 2 cut(s) 71, 384
BseAI TCCGGA 1 cut(s) 766
BseBI CCWGG 1 cut(s) 487
BseDI CCNNGG 2 cut(s) 132, 670
BseLI CCNNNNNNNGG 2 cut(s) 93, 576
BseMI GCAATG 2 cut(s) 71, 384
BseMII CTCAG 4 cut(s) 89, 329, 351, 816
BseNI ACTGG 2 cut(s) 415, 566
BseRI GAGGAG 2 cut(s) 434, 842
BseXI GCAGC 5 cut(s) 226, 381, 769, 805, 808
BshFI GGCC 3 cut(s) 383, 431, 516
BsiSI CCGG 3 cut(s) 93, 700, 767
BslI CCNNNNNNNGG 2 cut(s) 93, 576
BsmAI GTCTC 2 cut(s) 48, 348
BsmBI CGTCTC 1 cut(s) 48
BsmI GAATGC 1 cut(s) 850
BsnI GGCC 3 cut(s) 383, 431, 516
Bsp119I TTCGAA 1 cut(s) 114
Bsp13I TCCGGA 1 cut(s) 766
Bsp143I GATC 3 cut(s) 189, 246, 255
Bsp1720I GCTNAGC 1 cut(s) 365
Bsp19I CCATGG 1 cut(s) 670
BspACI CCGC 5 cut(s) 17, 198, 208, 229, 389
BspANI GGCC 3 cut(s) 383, 431, 516
BspCNI CTCAG 4 cut(s) 88, 328, 352, 817
BspEI TCCGGA 1 cut(s) 766
BspPI GGATC 2 cut(s) 184, 254
BspT104I TTCGAA 1 cut(s) 114
BsrBI CCGCTC 1 cut(s) 231
BsrDI GCAATG 2 cut(s) 71, 384
BsrI ACTGG 2 cut(s) 415, 566
BssECI CCNNGG 2 cut(s) 132, 670
BssMI GATC 3 cut(s) 189, 246, 255
BssNI GRCGYC 2 cut(s) 32, 41
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 670
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 1 cut(s) 487
Bst4CI ACNGT 1 cut(s) 813
Bst6I CTCTTC 1 cut(s) 419
BstACI GRCGYC 2 cut(s) 32, 41
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 72, 328
BstDEI CTNAG 5 cut(s) 75, 315, 360, 365, 825
BstDSI CCRYGG 2 cut(s) 132, 670
BstKTI GATC 3 cut(s) 192, 249, 258
BstMAI GTCTC 2 cut(s) 48, 348
BstMBI GATC 3 cut(s) 189, 246, 255
BstMWI GCNNNNNNNGC 4 cut(s) 38, 332, 782, 788
BstNI CCWGG 1 cut(s) 487
BstSCI CCNGG 2 cut(s) 92, 485
BstV1I GCAGC 5 cut(s) 226, 381, 769, 805, 808
BstV2I GAAGAC 3 cut(s) 413, 572, 725
BstX2I RGATCY 2 cut(s) 189, 255
BstYI RGATCY 2 cut(s) 189, 255
BsuRI GGCC 3 cut(s) 383, 431, 516
BtgI CCRYGG 2 cut(s) 132, 670
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 2 cut(s) 72, 328
Cfr13I GGNCC 1 cut(s) 429
CseI GACGC 4 cut(s) 21, 30, 319, 539
Csp6I GTAC 3 cut(s) 104, 226, 604
CviAII CATG 1 cut(s) 671
CviQI GTAC 3 cut(s) 104, 226, 604
DdeI CTNAG 5 cut(s) 75, 315, 360, 365, 825
DpnI GATC 3 cut(s) 191, 248, 257
DpnII GATC 3 cut(s) 189, 246, 255
EaeI YGGCCR 2 cut(s) 381, 514
Eam1104I CTCTTC 1 cut(s) 419
EarI CTCTTC 1 cut(s) 419
EciI GGCGGA 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 670
Eco57I CTGAAG 1 cut(s) 852
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 670
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 1 cut(s) 674
FaiI YATR 8 cut(s) 139, 395, 468, 552, 627, 654, 672, 816
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 1 cut(s) 670
Fnu4HI GCNGC 6 cut(s) 198, 240, 370, 783, 819, 822
Fsp4HI GCNGC 6 cut(s) 198, 240, 370, 783, 819, 822
GluI GCNGC 6 cut(s) 198, 240, 370, 783, 819, 822
HaeIII GGCC 3 cut(s) 383, 431, 516
HapII CCGG 3 cut(s) 93, 700, 767
HgaI GACGC 4 cut(s) 21, 30, 319, 539
Hin1I GRCGYC 2 cut(s) 32, 41
Hin1II CATG 1 cut(s) 674
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HindIII AAGCTT 1 cut(s) 774
HinfI GANTC 3 cut(s) 8, 48, 446
HpaII CCGG 3 cut(s) 93, 700, 767
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 1 cut(s) 492
Hpy188I TCNGA 3 cut(s) 53, 223, 871
Hpy188III TCNNGA 6 cut(s) 45, 77, 461, 734, 767, 836
Hpy8I GTNNAC 1 cut(s) 492
Hpy99I CGWCG 3 cut(s) 37, 40, 335
HpyAV CCTTC 1 cut(s) 697
HpyCH4III ACNGT 1 cut(s) 813
HpyCH4IV ACGT 1 cut(s) 843
HpyCH4V TGCA 1 cut(s) 850
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 332, 782, 788
HpyF3I CTNAG 5 cut(s) 75, 315, 360, 365, 825
HpySE526I ACGT 1 cut(s) 843
Hsp92I GRCGYC 2 cut(s) 32, 41
Hsp92II CATG 1 cut(s) 674
Kpn2I TCCGGA 1 cut(s) 766
Kzo9I GATC 3 cut(s) 189, 246, 255
LmnI GCTCC 1 cut(s) 236
Lsp1109I GCAGC 5 cut(s) 226, 381, 769, 805, 808
MaeII ACGT 1 cut(s) 843
MalI GATC 3 cut(s) 191, 248, 257
MbiI CCGCTC 1 cut(s) 231
MboI GATC 3 cut(s) 189, 246, 255
MboII GAAGA 8 cut(s) 300, 418, 436, 449, 536, 577, 727, 730
MfeI CAATTG 1 cut(s) 792
MflI RGATCY 2 cut(s) 189, 255
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 7 cut(s) 80, 337, 518, 571, 686, 707, 792
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 1 cut(s) 455
Mox20I TGGCCA 1 cut(s) 383
MroI TCCGGA 1 cut(s) 766
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MspI CCGG 3 cut(s) 93, 700, 767
MspR9I CCNGG 2 cut(s) 94, 487
MunI CAATTG 1 cut(s) 792
Mva1269I GAATGC 1 cut(s) 850
MvaI CCWGG 1 cut(s) 487
MwoI GCNNNNNNNGC 4 cut(s) 38, 332, 782, 788
NciI CCSGG 1 cut(s) 94
NcoI CCATGG 1 cut(s) 670
NdeII GATC 3 cut(s) 189, 246, 255
NlaIII CATG 1 cut(s) 674
NmeAIII GCCGAG 1 cut(s) 492
NspV TTCGAA 1 cut(s) 114
PctI GAATGC 1 cut(s) 850
PfeI GAWTC 2 cut(s) 8, 48
PkrI GCNGC 6 cut(s) 199, 241, 371, 784, 820, 823
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
Psp6I CCWGG 1 cut(s) 485
PspGI CCWGG 1 cut(s) 485
PspPI GGNCC 1 cut(s) 429
PsuI RGATCY 2 cut(s) 189, 255
RsaI GTAC 3 cut(s) 105, 227, 605
RsaNI GTAC 3 cut(s) 104, 226, 604
SatI GCNGC 6 cut(s) 198, 240, 370, 783, 819, 822
Sau3AI GATC 3 cut(s) 189, 246, 255
Sau96I GGNCC 1 cut(s) 429
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 2 cut(s) 94, 487
SfuI TTCGAA 1 cut(s) 114
Sse9I AATT 7 cut(s) 80, 337, 518, 571, 686, 707, 792
SsiI CCGC 5 cut(s) 17, 198, 208, 229, 389
StyD4I CCNGG 2 cut(s) 92, 485
StyI CCWWGG 1 cut(s) 670
TaaI ACNGT 1 cut(s) 813
TaiI ACGT 1 cut(s) 846
TaqI TCGA 4 cut(s) 46, 114, 472, 837
TasI AATT 7 cut(s) 80, 337, 518, 571, 686, 707, 792
TatI WGTACW 1 cut(s) 603
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 2 cut(s) 8, 48
TscAI CASTG 1 cut(s) 364
TseI GCWGC 5 cut(s) 239, 369, 782, 818, 821
TspGWI ACGGA 2 cut(s) 76, 121
TspRI CASTG 1 cut(s) 364
XapI RAATTY 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.