Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016543

Physical Location & Seq

Genomic Coordinates Reverse (-)

17355299 .. 17357622

Gene Structure 2324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTCGGATGCGTATTGTACGGATTGTAAAAAGGAGACGGAGTTGGTTGTCGATCACTCAGCCGGAGATACCCTTTGCTCCGAGTGTGGTTTGGTTTTGGAATCTCACTCCATTGATGAGACCTCTGAGTGGCGTACCTTCGCTAATGAATCTTCCAACAGCGATCCCAATCGTGTCGGTGGTCCAACCAACCCGCTTCTCGCTGATAGTGCTTTAACCACTGTTATCGCTAAGCCCAATGGTTCATCTGGTGATTTCTTGTCTTCTTCTCTCGGGAGGTGGCAGAATCGTAACTCCAATTCCGATCGTGGTTTGATTCAAGCTTTTAAAACCATTGCTACCATGTCTGAAAGGTTGGGACTTGTTGCAACTATCAAGGATCGGGCTAATGAGTTATATAAGAGGCTGGAGGATCAGAAGTCAAGCAGGGGAAGAAATCAGGATGCACTTTATGCAGCCTGTCTGTACATTGCTTGTCGCCAAGAGGACAAGCCACGAACTATTAAGGAAATATGCGTTATTGCCAATGGGGCGACAAAGAAGGAAATTGGCCGAGCAAAAGACTACATTGTTAAGACATTGGGACTGGAGCCTGGTCAGTCTGTGGATTTAGGAACTATACACGCTGGTGATTTCATGAGAAGGTTCTGCTCCAACCTTGCAATGTCTAACCATGCGGTGAAAGCTGCTCAGGAAGCTGTGCAAAAATCTGAGGAATTTGATATAAGGAGGAGTCCTATATCAATAGCAGCAGTAGTCATCTATATCATAACCCAGCTGTCTGATGACAAGAAGACTCTCAAAGATATATCGCATGCGACAGGAGTAGCAGAAGGGACAATAAGGAATTCATACAAAGACTTGTATCCACATCTGTCAAAGATAGCACCAAGTTGGTATGCAAAGGAAGAGGATCTGAAAAACCTGTCAAGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006935 GO:0007275 GO:0008150 GO:0009605 GO:0009791 GO:0009856 GO:0009888 GO:0009960 GO:0010154 GO:0010183 GO:0010769 GO:0022414 GO:0022603 GO:0022604 GO:0032501 GO:0032502 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0048316 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0061458 GO:0065007 GO:0080092 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIB TF_Zn_Ribbon

Protein Analysis

312

Amino Acids

34.27

Weight (kDa)

6.34

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_Ribbon_TF	PF08271	5 - 47	5.9e-15	TFIIB zinc-binding
TFIIB	PF00382	102 - 185	2.6e-19	Transcription factor TFIIB repeat
TFIIB	PF00382	206 - 290	5.4e-14	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41630
fragaria_vesca	FvH4_6g46960
prunus_persica	Prupe.3G255700_v2.0.a1 Prupe.3G255800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0165941
rosa_laevigata	RLG00000021571
rosa_multiflora	Rmu_sc0006218.1_g000012
rosa_roxburghii	Rroxscaffold_2G00085290
rosa_rugosa	Rorug02G0519300
rosa_samantha	Rh2AG585000 Rh2BG596800 Rh2CG567600 Rh2DG607000
rosa_wichuraiana	Rw2G048780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	194, 677
AclWI	GGATC	4 cut(s)	158, 387, 420, 921
AcoI	YGGCCR	1 cut(s)	550
AcsI	RAATTY	2 cut(s)	716, 847
AfaI	GTAC	3 cut(s)	19, 136, 467
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	592
AleI	CACNNNNGTG	1 cut(s)	627
AluBI	AGCT	4 cut(s)	323, 686, 698, 778
AluI	AGCT	4 cut(s)	323, 686, 698, 778
Alw26I	GTCTC	2 cut(s)	29, 113
AlwI	GGATC	4 cut(s)	158, 387, 420, 921
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	550
ApeKI	GCWGC	3 cut(s)	455, 686, 749
ApoI	RAATTY	2 cut(s)	716, 847
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	263, 641, 691
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	182
BbsI	GAAGAC	2 cut(s)	255, 800
BbvI	GCAGC	3 cut(s)	467, 673, 761
BciT130I	CCWGG	1 cut(s)	594
BciVI	GTATCC	1 cut(s)	876
BcoDI	GTCTC	2 cut(s)	29, 113
BfuI	GTATCC	1 cut(s)	876
BglI	GCCNNNNNGGC	1 cut(s)	530
BisI	GCNGC	3 cut(s)	456, 687, 750
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	3 cut(s)	457, 688, 751
Bme1390I	CCNGG	1 cut(s)	594
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	591
BmrFI	CCNGG	1 cut(s)	594
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	2 cut(s)	255, 800
BpmI	CTGGAG	2 cut(s)	428, 608
Bpu10I	CCTNAGC	1 cut(s)	690
Bpu1102I	GCTNAGC	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	591
Bse3DI	GCAATG	3 cut(s)	333, 468, 669
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	594
BseGI	GGATG	2 cut(s)	13, 448
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMI	GCAATG	3 cut(s)	333, 468, 669
BseMII	CTCAG	4 cut(s)	72, 117, 702, 704
BseNI	ACTGG	1 cut(s)	591
BseRI	GAGGAG	1 cut(s)	745
BseXI	GCAGC	3 cut(s)	467, 673, 761
BseYI	CCCAGC	1 cut(s)	774
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	1 cut(s)	552
BsiEI	CGRYCG	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	3 cut(s)	372, 597, 850
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	2 cut(s)	29, 113
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	3 cut(s)	372, 597, 850
BsnI	GGCC	1 cut(s)	552
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	272
Bsp1407I	TGTACA	1 cut(s)	465
Bsp143I	GATC	6 cut(s)	52, 163, 304, 379, 412, 913
Bsp1720I	GCTNAGC	1 cut(s)	231
BspACI	CCGC	2 cut(s)	194, 677
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	4 cut(s)	71, 118, 703, 703
BspHI	TCATGA	1 cut(s)	636
BspLI	GGNNCC	1 cut(s)	591
BspPI	GGATC	4 cut(s)	158, 387, 420, 921
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	3 cut(s)	333, 468, 669
BsrGI	TGTACA	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	591
BssMI	GATC	6 cut(s)	52, 163, 304, 379, 412, 913
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	903
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	816
BstDEI	CTNAG	5 cut(s)	58, 126, 231, 690, 711
BstF5I	GGATG	2 cut(s)	13, 448
BstKTI	GATC	6 cut(s)	55, 166, 307, 382, 415, 916
BstMAI	GTCTC	2 cut(s)	29, 113
BstMBI	GATC	6 cut(s)	52, 163, 304, 379, 412, 913
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 452, 530, 683, 695
BstNI	CCWGG	1 cut(s)	594
BstNSI	RCATGY	1 cut(s)	818
BstSCI	CCNGG	1 cut(s)	592
BstV1I	GCAGC	3 cut(s)	467, 673, 761
BstV2I	GAAGAC	2 cut(s)	255, 800
BstX2I	RGATCY	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	913
BsuI	GTATCC	1 cut(s)	876
BsuRI	GGCC	1 cut(s)	552
BtsCI	GGATG	2 cut(s)	13, 448
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	816
CciI	TCATGA	1 cut(s)	636
Cfr13I	GGNCC	1 cut(s)	182
Csp6I	GTAC	3 cut(s)	18, 135, 466
CviAII	CATG	4 cut(s)	343, 637, 674, 815
CviQI	GTAC	3 cut(s)	18, 135, 466
DdeI	CTNAG	5 cut(s)	58, 126, 231, 690, 711
DpnI	GATC	6 cut(s)	54, 165, 306, 381, 414, 915
DpnII	GATC	6 cut(s)	52, 163, 304, 379, 412, 913
DraI	TTTAAA	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	550
Eam1104I	CTCTTC	1 cut(s)	903
EarI	CTCTTC	1 cut(s)	903
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	847
EcoRII	CCWGG	1 cut(s)	592
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	4 cut(s)	346, 640, 677, 818
FaqI	GGGAC	3 cut(s)	372, 597, 850
FatI	CATG	4 cut(s)	342, 636, 673, 814
FauI	CCCGC	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	456, 687, 750
FokI	GGATG	2 cut(s)	20, 455
Fsp4HI	GCNGC	3 cut(s)	456, 687, 750
GluI	GCNGC	3 cut(s)	456, 687, 750
GsaI	CCCAGC	1 cut(s)	778
GsuI	CTGGAG	2 cut(s)	428, 608
HaeIII	GGCC	1 cut(s)	552
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	4 cut(s)	346, 640, 677, 818
HindIII	AAGCTT	1 cut(s)	321
HinfI	GANTC	6 cut(s)	101, 149, 286, 316, 733, 796
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	3 cut(s)	263, 641, 691
Hpy188I	TCNGA	9 cut(s)	7, 82, 127, 304, 349, 417, 712, 784, 918
Hpy188III	TCNNGA	4 cut(s)	274, 440, 637, 692
HpyAV	CCTTC	4 cut(s)	148, 535, 636, 827
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	6 cut(s)	368, 446, 455, 662, 703, 902
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 452, 530, 683, 695
HpyF3I	CTNAG	5 cut(s)	58, 126, 231, 690, 711
Hsp92II	CATG	4 cut(s)	346, 640, 677, 818
Kzo9I	GATC	6 cut(s)	52, 163, 304, 379, 412, 913
LmnI	GCTCC	3 cut(s)	83, 589, 656
Lsp1109I	GCAGC	3 cut(s)	467, 673, 761
LweI	GCATC	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	6 cut(s)	54, 165, 306, 381, 414, 915
MboI	GATC	6 cut(s)	52, 163, 304, 379, 412, 913
MboII	GAAGA	6 cut(s)	144, 255, 258, 444, 805, 920
MflI	RGATCY	1 cut(s)	913
MluCI	AATT	4 cut(s)	298, 546, 716, 847
MlyI	GAGTC	2 cut(s)	742, 790
MmeI	TCCRAC	3 cut(s)	180, 209, 678
MnlI	CCTC	8 cut(s)	133, 270, 396, 403, 478, 706, 723, 904
MseI	TTAA	4 cut(s)	215, 327, 504, 573
MslI	CAYNNNNRTG	1 cut(s)	627
MspA1I	CMGCKG	1 cut(s)	778
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	594
MvaI	CCWGG	1 cut(s)	594
MwoI	GCNNNNNNNGC	5 cut(s)	209, 452, 530, 683, 695
NdeII	GATC	6 cut(s)	52, 163, 304, 379, 412, 913
NlaIII	CATG	4 cut(s)	346, 640, 677, 818
NlaIV	GGNNCC	1 cut(s)	591
NmeAIII	GCCGAG	1 cut(s)	578
NspI	RCATGY	1 cut(s)	818
OliI	CACNNNNGTG	1 cut(s)	627
PaeI	GCATGC	1 cut(s)	818
PagI	TCATGA	1 cut(s)	636
PfeI	GAWTC	4 cut(s)	101, 149, 286, 316
PkrI	GCNGC	3 cut(s)	457, 688, 751
Ple19I	CGATCG	1 cut(s)	307
PleI	GAGTC	2 cut(s)	741, 790
PpsI	GAGTC	2 cut(s)	741, 790
Psp6I	CCWGG	1 cut(s)	592
PspFI	CCCAGC	1 cut(s)	774
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	1 cut(s)	591
PspPI	GGNCC	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	913
PvuI	CGATCG	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	778
RsaI	GTAC	3 cut(s)	19, 136, 467
RsaNI	GTAC	3 cut(s)	18, 135, 466
RseI	CAYNNNNRTG	1 cut(s)	627
SaqAI	TTAA	4 cut(s)	215, 327, 504, 573
SatI	GCNGC	3 cut(s)	456, 687, 750
Sau3AI	GATC	6 cut(s)	52, 163, 304, 379, 412, 913
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	2 cut(s)	742, 790
ScrFI	CCNGG	1 cut(s)	594
SfaNI	GCATC	1 cut(s)	433
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	627
SphI	GCATGC	1 cut(s)	818
Sse9I	AATT	4 cut(s)	298, 546, 716, 847
SsiI	CCGC	2 cut(s)	194, 677
StyD4I	CCNGG	1 cut(s)	592
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	51
TasI	AATT	4 cut(s)	298, 546, 716, 847
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	4 cut(s)	101, 149, 286, 316
Tru1I	TTAA	4 cut(s)	215, 327, 504, 573
Tru9I	TTAA	4 cut(s)	215, 327, 504, 573
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	3 cut(s)	455, 686, 749
TspDTI	ATGAA	4 cut(s)	162, 234, 625, 840
TspGWI	ACGGA	2 cut(s)	35, 53
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	2 cut(s)	716, 847
XceI	RCATGY	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.