Prupe.3G255800_v2.0.a1

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016543
Physical Location & Seq
Forward (+)
24431841 .. 24433436
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G255800.1

Sequence Viewer

Length: 858 bp
ATGGAAAAAGACAGTGGGTTTTGTTCAGACTGCAAGGCATACACAGACGTTGTGCTCGACCACCGGTCCGGTGACACAATCTGCACCGAATGCGGACTGGTTCTTGAAGAACGCGCTCGCTCCGACCCTATAACGGACAATGGTGTTCTTACCGTTAACATTTCGAACGACAACAAGAAGGCTGTTTCTAGTGTTCTTCCTCGGCTCCACAAGACTCTCCGAAACCCAGACAAGTCTCTCCACATTGCTTTTGAGTCCCTTGGTGTGATGGCCGACGGGCTAGCACTCGTTGCCACGATACGAGACCATGCCAAAGAGCTGTACGAGAAGGCCGACAATCGCAAGTTTTGTAGGGGAAGAAACTGTGATGCTATAATGGCTGCATGCCTCTTTCTTGCTTGCCAAGAAAAGGGTTTTCCCCGAACTCTAAAGGAAATCTCGACGGTTGCCAATGGTGCCTCAAGAAAAGAAATCAGCAGAATGAAAGAGCTCTTGAAGAAAATACTAGAGGTTGATTCGAAGACTACAAATGTCGGGGATCTTTCGCGGCGGTGCTGCTCCAGGATTGGTATGGCGAATCAAGATATGAAGGCTGTGTTGGAGACTCTGAACAAGTCGGAAGAGGTTGATGTAAGGCGAAGCCCTCAGTCTACTTTGGCAGCGGTTATGTACATGATAGCTCAGCTCTCCAATGACAAGTCAACTCGAGATTTAACTCTTCAAGATGTCTCACAAGCAGCTGATGTTGCGGTAGCGACAACTGAGAAGGCATACAAAGATCTATATCCCTATGCTTCAAGGATAATACCCAACTGGTTTGTCAAGTTGGAGGCCCTCAAGAAACTTTGCGTCCCTTGA

Protein Analysis

286

Amino Acids

31.61

Weight (kDa)

8.42

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016543)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41630
fragaria_vesca FvH4_6g46960
prunus_persica Prupe.3G255700_v2.0.a1 Prupe.3G255800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0165941
rosa_laevigata RLG00000021571
rosa_multiflora Rmu_sc0006218.1_g000012
rosa_roxburghii Rroxscaffold_2G00085290
rosa_rugosa Rorug02G0519300
rosa_samantha Rh2AG585000 Rh2BG596800 Rh2CG567600 Rh2DG607000
rosa_wichuraiana Rw2G048780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 455
AccI GTMKAC 1 cut(s) 650
AccII CGCG 2 cut(s) 114, 547
AciI CCGC 5 cut(s) 93, 547, 550, 662, 749
AclWI GGATC 1 cut(s) 546
AcoI YGGCCR 1 cut(s) 270
AfaI GTAC 2 cut(s) 323, 671
AfiI CCNNNNNNNGG 2 cut(s) 133, 409
AgeI ACCGGT 1 cut(s) 63
AgsI TTSAA 4 cut(s) 107, 496, 722, 798
AhdI GACNNNNNGTC 1 cut(s) 64
AjnI CCWGG 1 cut(s) 560
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 5 cut(s) 319, 490, 680, 685, 740
AluI AGCT 5 cut(s) 319, 490, 680, 685, 740
Alw21I GWGCWC 2 cut(s) 57, 492
Alw26I GTCTC 4 cut(s) 240, 297, 596, 733
AlwI GGATC 1 cut(s) 546
Ama87I CYCGRG 1 cut(s) 705
AoxI GGCC 3 cut(s) 270, 330, 831
ApeKI GCWGC 4 cut(s) 380, 555, 659, 737
AsiGI ACCGGT 1 cut(s) 63
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 66, 832
AsuHPI GGTGA 1 cut(s) 83
AsuII TTCGAA 2 cut(s) 164, 518
AsuNHI GCTAGC 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 705
AvaII GGWCC 1 cut(s) 66
BanI GGYRCC 1 cut(s) 455
BanII GRGCYC 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 527
Bbv12I GWGCWC 2 cut(s) 57, 492
BbvI GCAGC 4 cut(s) 367, 542, 671, 749
BccI CCATC 1 cut(s) 262
BciT130I CCWGG 1 cut(s) 562
BcoDI GTCTC 4 cut(s) 240, 297, 596, 733
BfaI CTAG 3 cut(s) 189, 281, 506
BglII AGATCT 1 cut(s) 778
BisI GCNGC 5 cut(s) 381, 548, 556, 660, 738
BlpI GCTNAGC 1 cut(s) 681
BlsI GCNGC 5 cut(s) 382, 549, 557, 661, 739
Bme1390I CCNGG 1 cut(s) 562
Bme18I GGWCC 1 cut(s) 66
BmeRI GACNNNNNGTC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 705
BmgT120I GGNCC 2 cut(s) 66, 832
BmiI GGNNCC 2 cut(s) 206, 457
BmrFI CCNGG 1 cut(s) 562
BmsI GCATC 1 cut(s) 358
BmtI GCTAGC 1 cut(s) 284
BpiI GAAGAC 1 cut(s) 527
BpmI CTGGAG 1 cut(s) 544
Bpu1102I GCTNAGC 1 cut(s) 681
Bpu14I TTCGAA 2 cut(s) 164, 518
BpuEI CTTGAG 2 cut(s) 445, 821
BsaBI GATNNNNATC 1 cut(s) 783
BsaI GGTCTC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 200, 259
BsaWI WCCGGW 2 cut(s) 63, 68
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 409
Bse118I RCCGGY 1 cut(s) 63
Bse1I ACTGG 2 cut(s) 102, 818
Bse3DI GCAATG 1 cut(s) 243
Bse8I GATNNNNATC 1 cut(s) 783
BseBI CCWGG 1 cut(s) 562
BseDI CCNNGG 2 cut(s) 200, 259
BseJI GATNNNNATC 1 cut(s) 783
BseLI CCNNNNNNNGG 2 cut(s) 133, 409
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 3 cut(s) 659, 695, 753
BseNI ACTGG 2 cut(s) 102, 818
BseXI GCAGC 4 cut(s) 367, 542, 671, 749
BsgI GTGCAG 1 cut(s) 67
Bsh1236I CGCG 2 cut(s) 114, 547
BshFI GGCC 3 cut(s) 272, 332, 833
BshNI GGYRCC 1 cut(s) 455
BshTI ACCGGT 1 cut(s) 63
BsiHKAI GWGCWC 2 cut(s) 57, 492
BsiHKCI CYCGRG 1 cut(s) 705
BsiSI CCGG 2 cut(s) 64, 69
BslFI GGGAC 2 cut(s) 241, 836
BslI CCNNNNNNNGG 2 cut(s) 133, 409
BsmAI GTCTC 4 cut(s) 240, 297, 596, 733
BsmFI GGGAC 2 cut(s) 241, 836
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 3 cut(s) 272, 332, 833
Bso31I GGTCTC 1 cut(s) 297
BsoBI CYCGRG 1 cut(s) 705
Bsp119I TTCGAA 2 cut(s) 164, 518
Bsp1286I GDGCHC 2 cut(s) 57, 492
Bsp1407I TGTACA 1 cut(s) 669
Bsp143I GATC 2 cut(s) 538, 778
Bsp1720I GCTNAGC 1 cut(s) 681
BspACI CCGC 5 cut(s) 93, 547, 550, 662, 749
BspANI GGCC 3 cut(s) 272, 332, 833
BspCNI CTCAG 3 cut(s) 658, 694, 754
BspFNI CGCG 2 cut(s) 114, 547
BspLI GGNNCC 2 cut(s) 206, 457
BspOI GCTAGC 1 cut(s) 284
BspPI GGATC 1 cut(s) 546
BspT104I TTCGAA 2 cut(s) 164, 518
BspT107I GGYRCC 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 63
BsrGI TGTACA 1 cut(s) 669
BsrI ACTGG 2 cut(s) 102, 818
BssAI RCCGGY 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 200, 259
BssMI GATC 2 cut(s) 538, 778
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 562
Bst4CI ACNGT 4 cut(s) 14, 154, 365, 445
Bst6I CTCTTC 2 cut(s) 615, 723
BstAPI GCANNNNNTGC 2 cut(s) 90, 290
BstAUI TGTACA 1 cut(s) 669
BstBI TTCGAA 2 cut(s) 164, 518
BstC8I GCNNGC 4 cut(s) 118, 282, 385, 400
BstDEI CTNAG 3 cut(s) 645, 681, 762
BstFNI CGCG 2 cut(s) 114, 547
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 2 cut(s) 541, 781
BstMAI GTCTC 4 cut(s) 240, 297, 596, 733
BstMBI GATC 2 cut(s) 538, 778
BstMWI GCNNNNNNNGC 5 cut(s) 90, 290, 377, 455, 746
BstNI CCWGG 1 cut(s) 562
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 560
BstUI CGCG 2 cut(s) 114, 547
BstV1I GCAGC 4 cut(s) 367, 542, 671, 749
BstV2I GAAGAC 1 cut(s) 527
BstX2I RGATCY 2 cut(s) 538, 778
BstYI RGATCY 2 cut(s) 538, 778
BsuRI GGCC 3 cut(s) 272, 332, 833
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 4 cut(s) 118, 282, 385, 400
CfoI GCGC 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 63
Cfr13I GGNCC 2 cut(s) 66, 832
CpoI CGGWCCG 1 cut(s) 66
CseI GACGC 1 cut(s) 838
Csp6I GTAC 2 cut(s) 322, 670
CspAI ACCGGT 1 cut(s) 63
CspI CGGWCCG 1 cut(s) 66
CviAII CATG 3 cut(s) 308, 384, 673
CviQI GTAC 2 cut(s) 322, 670
DdeI CTNAG 3 cut(s) 645, 681, 762
DpnI GATC 2 cut(s) 540, 780
DpnII GATC 2 cut(s) 538, 778
DriI GACNNNNNGTC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 615, 723
Eam1105I GACNNNNNGTC 1 cut(s) 64
EarI CTCTTC 2 cut(s) 615, 723
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 705
EcoICRI GAGCTC 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 832
EcoRII CCWGG 1 cut(s) 560
EcoT14I CCWWGG 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 3 cut(s) 311, 387, 676
FaqI GGGAC 2 cut(s) 241, 836
FatI CATG 3 cut(s) 307, 383, 672
FblI GTMKAC 1 cut(s) 650
Fnu4HI GCNGC 5 cut(s) 381, 548, 556, 660, 738
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 5 cut(s) 381, 548, 556, 660, 738
FspBI CTAG 3 cut(s) 189, 281, 506
GlaI GCGC 1 cut(s) 115
GluI GCNGC 5 cut(s) 381, 548, 556, 660, 738
GsuI CTGGAG 1 cut(s) 544
HaeIII GGCC 3 cut(s) 272, 332, 833
HapII CCGG 2 cut(s) 64, 69
HgaI GACGC 1 cut(s) 838
HhaI GCGC 1 cut(s) 116
Hin1II CATG 3 cut(s) 311, 387, 676
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 2 cut(s) 157, 702
HindII GTYRAC 2 cut(s) 157, 702
HinfI GANTC 5 cut(s) 214, 254, 515, 577, 604
HpaI GTTAAC 1 cut(s) 157
HpaII CCGG 2 cut(s) 64, 69
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 3 cut(s) 157, 651, 702
Hpy188I TCNGA 5 cut(s) 28, 124, 221, 609, 619
Hpy188III TCNNGA 8 cut(s) 104, 439, 462, 493, 581, 707, 722, 838
Hpy8I GTNNAC 3 cut(s) 157, 651, 702
Hpy99I CGWCG 2 cut(s) 278, 445
HpyAV CCTTC 4 cut(s) 172, 322, 583, 760
HpyCH4III ACNGT 4 cut(s) 14, 154, 365, 445
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 3 cut(s) 33, 84, 383
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 290, 377, 455, 746
HpyF3I CTNAG 3 cut(s) 645, 681, 762
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 3 cut(s) 311, 387, 676
HspAI GCGC 1 cut(s) 114
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 2 cut(s) 538, 778
LmnI GCTCC 3 cut(s) 125, 210, 563
LpnPI CCDG 7 cut(s) 77, 82, 83, 240, 547, 574, 799
Lsp1109I GCAGC 4 cut(s) 367, 542, 671, 749
LweI GCATC 1 cut(s) 358
MaeI CTAG 3 cut(s) 189, 281, 506
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 71
MalI GATC 2 cut(s) 540, 780
MboI GATC 2 cut(s) 538, 778
MboII GAAGA 7 cut(s) 119, 188, 369, 508, 532, 632, 710
MflI RGATCY 2 cut(s) 538, 778
MhlI GDGCHC 2 cut(s) 57, 492
MlyI GAGTC 3 cut(s) 208, 263, 598
MmeI TCCRAC 4 cut(s) 147, 579, 597, 807
MnlI CCTC 8 cut(s) 210, 398, 469, 502, 616, 654, 823, 845
MseI TTAA 2 cut(s) 156, 713
MspA1I CMGCKG 2 cut(s) 662, 740
MspI CCGG 2 cut(s) 64, 69
MspR9I CCNGG 1 cut(s) 562
Mva1269I GAATGC 1 cut(s) 95
MvaI CCWGG 1 cut(s) 562
MvnI CGCG 2 cut(s) 114, 547
MwoI GCNNNNNNNGC 5 cut(s) 90, 290, 377, 455, 746
NdeII GATC 2 cut(s) 538, 778
NheI GCTAGC 1 cut(s) 280
NlaIII CATG 3 cut(s) 311, 387, 676
NlaIV GGNNCC 2 cut(s) 206, 457
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 71
NspI RCATGY 1 cut(s) 387
NspV TTCGAA 2 cut(s) 164, 518
PaeI GCATGC 1 cut(s) 387
PaeR7I CTCGAG 1 cut(s) 705
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 330
PctI GAATGC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 515, 577
PfoI TCCNGGA 1 cut(s) 560
PinAI ACCGGT 1 cut(s) 63
PkrI GCNGC 5 cut(s) 382, 549, 557, 661, 739
PleI GAGTC 3 cut(s) 208, 262, 598
PpsI GAGTC 3 cut(s) 208, 262, 598
Psp124BI GAGCTC 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 560
PspGI CCWGG 1 cut(s) 560
PspN4I GGNNCC 2 cut(s) 206, 457
PspPI GGNCC 2 cut(s) 66, 832
PsuI RGATCY 2 cut(s) 538, 778
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 2 cut(s) 323, 671
RsaNI GTAC 2 cut(s) 322, 670
Rsr2I CGGWCCG 1 cut(s) 66
RsrII CGGWCCG 1 cut(s) 66
SacI GAGCTC 1 cut(s) 492
SaqAI TTAA 2 cut(s) 156, 713
SatI GCNGC 5 cut(s) 381, 548, 556, 660, 738
Sau3AI GATC 2 cut(s) 538, 778
Sau96I GGNCC 2 cut(s) 66, 832
SchI GAGTC 3 cut(s) 208, 263, 598
ScrFI CCNGG 1 cut(s) 562
SduI GDGCHC 2 cut(s) 57, 492
SetI ASST 8 cut(s) 51, 321, 492, 513, 627, 682, 687, 742
SfaNI GCATC 1 cut(s) 358
Sfr274I CTCGAG 1 cut(s) 705
SfuI TTCGAA 2 cut(s) 164, 518
SinI GGWCC 1 cut(s) 66
SlaI CTCGAG 1 cut(s) 705
SmlI CTYRAG 3 cut(s) 460, 705, 836
SmoI CTYRAG 3 cut(s) 460, 705, 836
SphI GCATGC 1 cut(s) 387
SsiI CCGC 5 cut(s) 93, 547, 550, 662, 749
SspMI CTAG 3 cut(s) 189, 281, 506
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 1 cut(s) 560
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 4 cut(s) 14, 154, 365, 445
TaiI ACGT 1 cut(s) 51
TaqI TCGA 5 cut(s) 57, 164, 440, 518, 706
TatI WGTACW 1 cut(s) 669
TauI GCSGC 1 cut(s) 550
TfiI GAWTC 2 cut(s) 515, 577
Tru1I TTAA 2 cut(s) 156, 713
Tru9I TTAA 2 cut(s) 156, 713
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 4 cut(s) 380, 555, 659, 737
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 497, 602
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 66
XceI RCATGY 1 cut(s) 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 568
XhoI CTCGAG 1 cut(s) 705
XmiI GTMKAC 1 cut(s) 650
XspI CTAG 3 cut(s) 189, 281, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.