Prupe.3G255700_v2.0.a1

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016543
Physical Location & Seq
Forward (+)
24426952 .. 24428960
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G255700.1

Sequence Viewer

Length: 969 bp
ATGCAAAAGACTAAGCAAAAGGAGGATTGGGATAAGGGCTTTTGCAACGATAATGGGTTTTGTTCAGACTGCAAGACATACACAGACGTTGTGCTCGACCACCGGTCCGGTGACACAATCTGCACCCAATGCGGCCTGATTCTTGAAGATCACGCTGTGGATTTCACCGCCGAATGGCGAAACTTTGATGATCAAGACTCTACCAACGATCCGTCACGCGTCGGCGCTCGCTCCGATCCTTTACTGGACAGTGGTGTTCTTACCGTTAACATCTCCAACGACAACAAGAAGGCTGTTTCTTGTGTTCTTCCTCGGCTCCACAAGACTCTCCAAAACCCAGACAAGTCTCTCCACATTGCTTTTGAGACCCTTGGTATGATGGCCGACCGGCTAGCCCTAGTTACGGCGATACGAGACCATGCCAAAGAGCTGTACAAGAAGGCCGACGATCGCAAGTTTTGTAGGGGAAGAAACTGTGATGCTATAATGGCTGCCTGCCTCTTTCTTGCTTGCCAAGAAAAGGGTCTTCCCCGAACCTTAAAGGAAATCGCGATGGTTGCCAACGGTGCCACAAGAAAAGAAATCAACAGAATGAAAGAGCTCTTGAAGAAAATACTAGAGGTTGATTCGAAGACTACAAATGTTGGGGATCTTTCGCGGCGGTGCTGCTCCATGATTGGTATGGCTAATCAAGATATGAAGGCTGTGTTGGAGACTCTCAACAAGTCGAAAGAGGTTGATGTAAGGAGAAGCCCTAAGTCTGTTTTGGCAGCGGTTATGTACGTGATAGCGCAGCTCTCCAATGACAAGTCAACTCGAGATTTAACTCTTCATGATGTCTCACAAGCAGCTGATGTTGCGGTAGCGACAACTAAGAAGGCATACAAAGATCTATATCCCTATGTTTCAAGGATAATACCCAACTGGTTTGTCAAGTTGGAGGACCTCAAGATACTTTGCCTCCCTTGA

Protein Analysis

323

Amino Acids

36.11

Weight (kDa)

8.33

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016543)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41630
fragaria_vesca FvH4_6g46960
prunus_persica Prupe.3G255700_v2.0.a1 Prupe.3G255800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0165941
rosa_laevigata RLG00000021571
rosa_multiflora Rmu_sc0006218.1_g000012
rosa_roxburghii Rroxscaffold_2G00085290
rosa_rugosa Rorug02G0519300
rosa_samantha Rh2AG585000 Rh2BG596800 Rh2CG567600 Rh2DG607000
rosa_wichuraiana Rw2G048780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 566
AccII CGCG 3 cut(s) 219, 551, 658
AciI CCGC 6 cut(s) 132, 168, 658, 661, 773, 860
AclWI GGATC 3 cut(s) 203, 230, 657
AcoI YGGCCR 1 cut(s) 381
AdeI CACNNNGTG 1 cut(s) 157
AfaI GTAC 2 cut(s) 434, 782
AfiI CCNNNNNNNGG 3 cut(s) 174, 403, 520
AflIII ACRYGT 1 cut(s) 217
AgeI ACCGGT 1 cut(s) 102
AgsI TTSAA 3 cut(s) 146, 607, 909
AhdI GACNNNNNGTC 1 cut(s) 103
AjuI GAANNNNNNNTTGG 2 cut(s) 692, 724
AluBI AGCT 4 cut(s) 430, 601, 796, 851
AluI AGCT 4 cut(s) 430, 601, 796, 851
Alw21I GWGCWC 2 cut(s) 96, 603
Alw26I GTCTC 5 cut(s) 351, 359, 408, 707, 844
AlwI GGATC 3 cut(s) 203, 230, 657
Ama87I CYCGRG 1 cut(s) 816
AoxI GGCC 3 cut(s) 133, 381, 441
ApeKI GCWGC 5 cut(s) 491, 666, 770, 793, 848
AsiGI ACCGGT 1 cut(s) 102
AspLEI GCGC 2 cut(s) 227, 793
AspS9I GGNCC 2 cut(s) 105, 943
AsuHPI GGTGA 2 cut(s) 122, 157
AsuII TTCGAA 1 cut(s) 629
AsuNHI GCTAGC 1 cut(s) 391
AvaI CYCGRG 1 cut(s) 816
AvaII GGWCC 2 cut(s) 105, 943
BanI GGYRCC 1 cut(s) 566
BanII GRGCYC 1 cut(s) 603
BbsI GAAGAC 2 cut(s) 518, 638
Bbv12I GWGCWC 2 cut(s) 96, 603
BbvI GCAGC 5 cut(s) 478, 653, 782, 805, 860
BccI CCATC 2 cut(s) 373, 547
BceAI ACGGC 1 cut(s) 420
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 5 cut(s) 351, 359, 408, 707, 844
BfaI CTAG 3 cut(s) 392, 398, 617
BfoI RGCGCY 1 cut(s) 228
BglII AGATCT 1 cut(s) 889
BisI GCNGC 7 cut(s) 133, 492, 659, 667, 771, 794, 849
BlsI GCNGC 7 cut(s) 134, 493, 660, 668, 772, 795, 850
Bme18I GGWCC 2 cut(s) 105, 943
BmeRI GACNNNNNGTC 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 816
BmgT120I GGNCC 2 cut(s) 105, 943
BmiI GGNNCC 2 cut(s) 317, 568
BmsI GCATC 1 cut(s) 469
BmtI GCTAGC 1 cut(s) 395
BpiI GAAGAC 2 cut(s) 518, 638
Bpu14I TTCGAA 1 cut(s) 629
BpuEI CTTGAG 1 cut(s) 932
BsaAI YACGTR 1 cut(s) 784
BsaBI GATNNNNATC 1 cut(s) 894
BsaI GGTCTC 2 cut(s) 359, 408
BsaJI CCNNGG 2 cut(s) 311, 370
BsaWI WCCGGW 2 cut(s) 102, 107
BsaXI ACNNNNNCTCC 1 cut(s) 945
Bsc4I CCNNNNNNNGG 3 cut(s) 174, 403, 520
Bse118I RCCGGY 2 cut(s) 102, 387
Bse1I ACTGG 2 cut(s) 249, 929
Bse3DI GCAATG 1 cut(s) 354
Bse8I GATNNNNATC 1 cut(s) 894
BseDI CCNNGG 2 cut(s) 311, 370
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 3 cut(s) 174, 403, 520
BseMI GCAATG 1 cut(s) 354
BseNI ACTGG 2 cut(s) 249, 929
BseXI GCAGC 5 cut(s) 478, 653, 782, 805, 860
BsgI GTGCAG 1 cut(s) 106
Bsh1236I CGCG 3 cut(s) 219, 551, 658
Bsh1285I CGRYCG 2 cut(s) 388, 451
BshFI GGCC 3 cut(s) 135, 383, 443
BshNI GGYRCC 1 cut(s) 566
BshTI ACCGGT 1 cut(s) 102
BsiEI CGRYCG 2 cut(s) 388, 451
BsiHKAI GWGCWC 2 cut(s) 96, 603
BsiHKCI CYCGRG 1 cut(s) 816
BsiSI CCGG 3 cut(s) 103, 108, 388
BslI CCNNNNNNNGG 3 cut(s) 174, 403, 520
BsmAI GTCTC 5 cut(s) 351, 359, 408, 707, 844
BsnI GGCC 3 cut(s) 135, 383, 443
Bso31I GGTCTC 2 cut(s) 359, 408
BsoBI CYCGRG 1 cut(s) 816
Bsp119I TTCGAA 1 cut(s) 629
Bsp1286I GDGCHC 2 cut(s) 96, 603
Bsp1407I TGTACA 1 cut(s) 432
Bsp143I GATC 7 cut(s) 148, 190, 208, 235, 448, 649, 889
Bsp68I TCGCGA 1 cut(s) 551
BspACI CCGC 6 cut(s) 132, 168, 658, 661, 773, 860
BspANI GGCC 3 cut(s) 135, 383, 443
BspFNI CGCG 3 cut(s) 219, 551, 658
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 2 cut(s) 317, 568
BspOI GCTAGC 1 cut(s) 395
BspPI GGATC 3 cut(s) 203, 230, 657
BspT104I TTCGAA 1 cut(s) 629
BspT107I GGYRCC 1 cut(s) 566
BspTNI GGTCTC 2 cut(s) 359, 408
BsrDI GCAATG 1 cut(s) 354
BsrFI RCCGGY 2 cut(s) 102, 387
BsrGI TGTACA 1 cut(s) 432
BsrI ACTGG 2 cut(s) 249, 929
BssAI RCCGGY 2 cut(s) 102, 387
BssECI CCNNGG 2 cut(s) 311, 370
BssMI GATC 7 cut(s) 148, 190, 208, 235, 448, 649, 889
BssT1I CCWWGG 1 cut(s) 370
Bst4CI ACNGT 4 cut(s) 251, 265, 476, 566
Bst6I CTCTTC 1 cut(s) 834
BstAPI GCANNNNNTGC 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 432
BstBAI YACGTR 1 cut(s) 784
BstBI TTCGAA 1 cut(s) 629
BstC8I GCNNGC 4 cut(s) 229, 393, 496, 511
BstDEI CTNAG 3 cut(s) 12, 756, 873
BstFNI CGCG 3 cut(s) 219, 551, 658
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 2 cut(s) 227, 793
BstKTI GATC 7 cut(s) 151, 193, 211, 238, 451, 652, 892
BstMAI GTCTC 5 cut(s) 351, 359, 408, 707, 844
BstMBI GATC 7 cut(s) 148, 190, 208, 235, 448, 649, 889
BstMCI CGRYCG 2 cut(s) 388, 451
BstMWI GCNNNNNNNGC 5 cut(s) 129, 488, 557, 566, 857
BstUI CGCG 3 cut(s) 219, 551, 658
BstV1I GCAGC 5 cut(s) 478, 653, 782, 805, 860
BstV2I GAAGAC 2 cut(s) 518, 638
BstX2I RGATCY 2 cut(s) 649, 889
BstYI RGATCY 2 cut(s) 649, 889
BsuRI GGCC 3 cut(s) 135, 383, 443
BtgZI GCGATG 1 cut(s) 566
BtsIMutI CAGTG 1 cut(s) 256
BtuMI TCGCGA 1 cut(s) 551
Cac8I GCNNGC 4 cut(s) 229, 393, 496, 511
CciI TCATGA 1 cut(s) 832
CfoI GCGC 2 cut(s) 227, 793
Cfr10I RCCGGY 2 cut(s) 102, 387
Cfr13I GGNCC 2 cut(s) 105, 943
CpoI CGGWCCG 1 cut(s) 105
CseI GACGC 1 cut(s) 208
Csp6I GTAC 2 cut(s) 433, 781
CspAI ACCGGT 1 cut(s) 102
CspI CGGWCCG 1 cut(s) 105
CviAII CATG 3 cut(s) 419, 673, 833
CviQI GTAC 2 cut(s) 433, 781
DdeI CTNAG 3 cut(s) 12, 756, 873
DpnI GATC 7 cut(s) 150, 192, 210, 237, 450, 651, 891
DpnII GATC 7 cut(s) 148, 190, 208, 235, 448, 649, 889
DraIII CACNNNGTG 1 cut(s) 157
DriI GACNNNNNGTC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 834
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 834
Ecl136II GAGCTC 1 cut(s) 601
Eco130I CCWWGG 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 603
Eco31I GGTCTC 2 cut(s) 359, 408
Eco47I GGWCC 2 cut(s) 105, 943
Eco53kI GAGCTC 1 cut(s) 601
Eco88I CYCGRG 1 cut(s) 816
EcoICRI GAGCTC 1 cut(s) 601
EcoO109I RGGNCCY 1 cut(s) 943
EcoT14I CCWWGG 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 3 cut(s) 422, 676, 836
FatI CATG 3 cut(s) 418, 672, 832
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 7 cut(s) 133, 492, 659, 667, 771, 794, 849
FriOI GRGCYC 1 cut(s) 603
Fsp4HI GCNGC 7 cut(s) 133, 492, 659, 667, 771, 794, 849
FspBI CTAG 3 cut(s) 392, 398, 617
GlaI GCGC 2 cut(s) 226, 792
GluI GCNGC 7 cut(s) 133, 492, 659, 667, 771, 794, 849
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 3 cut(s) 135, 383, 443
HapII CCGG 3 cut(s) 103, 108, 388
HgaI GACGC 1 cut(s) 208
HhaI GCGC 2 cut(s) 227, 793
Hin1II CATG 3 cut(s) 422, 676, 836
Hin6I GCGC 2 cut(s) 225, 791
HinP1I GCGC 2 cut(s) 225, 791
HincII GTYRAC 2 cut(s) 268, 813
HindII GTYRAC 2 cut(s) 268, 813
HinfI GANTC 5 cut(s) 139, 197, 325, 626, 715
HpaI GTTAAC 1 cut(s) 268
HpaII CCGG 3 cut(s) 103, 108, 388
HphI GGTGA 2 cut(s) 122, 157
Hpy166II GTNNAC 2 cut(s) 268, 813
Hpy188I TCNGA 2 cut(s) 67, 235
Hpy188III TCNNGA 8 cut(s) 143, 194, 550, 604, 692, 818, 833, 949
Hpy8I GTNNAC 2 cut(s) 268, 813
Hpy99I CGWCG 2 cut(s) 224, 449
HpyAV CCTTC 4 cut(s) 283, 433, 694, 871
HpyCH4III ACNGT 4 cut(s) 251, 265, 476, 566
HpyCH4IV ACGT 2 cut(s) 87, 783
HpyCH4V TGCA 4 cut(s) 4, 45, 72, 123
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 488, 557, 566, 857
HpyF3I CTNAG 3 cut(s) 12, 756, 873
HpySE526I ACGT 2 cut(s) 87, 783
Hsp92II CATG 3 cut(s) 422, 676, 836
HspAI GCGC 2 cut(s) 225, 791
Ksp22I TGATCA 1 cut(s) 190
KspAI GTTAAC 1 cut(s) 268
Kzo9I GATC 7 cut(s) 148, 190, 208, 235, 448, 649, 889
LmnI GCTCC 3 cut(s) 236, 321, 674
LpnPI CCDG 8 cut(s) 116, 121, 149, 230, 351, 401, 508, 910
Lsp1109I GCAGC 5 cut(s) 478, 653, 782, 805, 860
LweI GCATC 1 cut(s) 469
MaeI CTAG 3 cut(s) 392, 398, 617
MaeII ACGT 2 cut(s) 87, 783
MaeIII GTNAC 3 cut(s) 110, 213, 400
MalI GATC 7 cut(s) 150, 192, 210, 237, 450, 651, 891
MboI GATC 7 cut(s) 148, 190, 208, 235, 448, 649, 889
MboII GAAGA 7 cut(s) 158, 299, 480, 518, 619, 643, 821
MflI RGATCY 2 cut(s) 649, 889
MhlI GDGCHC 2 cut(s) 96, 603
MluI ACGCGT 1 cut(s) 217
MlyI GAGTC 3 cut(s) 191, 319, 709
MmeI TCCRAC 3 cut(s) 300, 690, 918
MnlI CCTC 7 cut(s) 16, 321, 509, 613, 727, 934, 956
MseI TTAA 3 cut(s) 267, 539, 824
MspA1I CMGCKG 2 cut(s) 773, 851
MspI CCGG 3 cut(s) 103, 108, 388
MvnI CGCG 3 cut(s) 219, 551, 658
MwoI GCNNNNNNNGC 5 cut(s) 129, 488, 557, 566, 857
NdeII GATC 7 cut(s) 148, 190, 208, 235, 448, 649, 889
NheI GCTAGC 1 cut(s) 391
NlaIII CATG 3 cut(s) 422, 676, 836
NlaIV GGNNCC 2 cut(s) 317, 568
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 110, 213
NruI TCGCGA 1 cut(s) 551
NspV TTCGAA 1 cut(s) 629
PaeR7I CTCGAG 1 cut(s) 816
PagI TCATGA 1 cut(s) 832
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 2 cut(s) 139, 626
PinAI ACCGGT 1 cut(s) 102
PkrI GCNGC 7 cut(s) 134, 493, 660, 668, 772, 795, 850
Ple19I CGATCG 1 cut(s) 451
PleI GAGTC 3 cut(s) 191, 319, 709
PpsI GAGTC 3 cut(s) 191, 319, 709
Ppu21I YACGTR 1 cut(s) 784
PpuMI RGGWCCY 1 cut(s) 943
Psp124BI GAGCTC 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 943
PspN4I GGNNCC 2 cut(s) 317, 568
PspPI GGNCC 2 cut(s) 105, 943
PspPPI RGGWCCY 1 cut(s) 943
PsuI RGATCY 2 cut(s) 649, 889
PvuI CGATCG 1 cut(s) 451
PvuII CAGCTG 1 cut(s) 851
RruI TCGCGA 1 cut(s) 551
RsaI GTAC 2 cut(s) 434, 782
RsaNI GTAC 2 cut(s) 433, 781
Rsr2I CGGWCCG 1 cut(s) 105
RsrII CGGWCCG 1 cut(s) 105
SacI GAGCTC 1 cut(s) 603
SaqAI TTAA 3 cut(s) 267, 539, 824
SatI GCNGC 7 cut(s) 133, 492, 659, 667, 771, 794, 849
Sau3AI GATC 7 cut(s) 148, 190, 208, 235, 448, 649, 889
Sau96I GGNCC 2 cut(s) 105, 943
SchI GAGTC 3 cut(s) 191, 319, 709
SduI GDGCHC 2 cut(s) 96, 603
SfaNI GCATC 1 cut(s) 469
Sfr274I CTCGAG 1 cut(s) 816
SfuI TTCGAA 1 cut(s) 629
SinI GGWCC 2 cut(s) 105, 943
SlaI CTCGAG 1 cut(s) 816
SmlI CTYRAG 2 cut(s) 816, 947
SmoI CTYRAG 2 cut(s) 816, 947
SsiI CCGC 6 cut(s) 132, 168, 658, 661, 773, 860
SspMI CTAG 3 cut(s) 392, 398, 617
SstI GAGCTC 1 cut(s) 603
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 4 cut(s) 251, 265, 476, 566
TaiI ACGT 2 cut(s) 90, 786
TaqI TCGA 4 cut(s) 96, 629, 728, 817
TatI WGTACW 1 cut(s) 432
TauI GCSGC 2 cut(s) 135, 661
TfiI GAWTC 2 cut(s) 139, 626
Tru1I TTAA 3 cut(s) 267, 539, 824
Tru9I TTAA 3 cut(s) 267, 539, 824
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 2 cut(s) 110, 213
TseI GCWGC 5 cut(s) 491, 666, 770, 793, 848
Tsp45I GTSAC 2 cut(s) 110, 213
TspDTI ATGAA 3 cut(s) 608, 713, 821
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 1 cut(s) 256
VpaK11BI GGWCC 2 cut(s) 105, 943
XcmI CCANNNNNNNNNTGG 1 cut(s) 679
XhoI CTCGAG 1 cut(s) 816
XspI CTAG 3 cut(s) 392, 398, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.