Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006218.1

Orthogroup ID

OG0016543

Physical Location & Seq

Genomic Coordinates Forward (+)

62315 .. 63862

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006218.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atggcctacgcggtctccgacaccgatcagtattgcaaagactgcaaaagaatcacacagaccgtcttggaccaccgacaaggcgacactatctgctccgagtgcggtttggttctcgaagcctacttcgtcgataccaccgccgagtggcgaacctttgccgacaccgaaaacgaccacgaccctcaacgcaccggtgacgccgtcaatcctcttctccacaacggcggcctcggcaccatgatctccgacgccaaaaacaacgtcgttggctctaaccaatcgagaagtctcggccgggttaacaagatggtgcagaagcagcaaaaccctgataggtctctcacccaagctttcgcctccatcgcttcgaaagctagcatgttagggcttatgaacacagtggtttctcgtgctcaacagatttacaaggaggcagatgataaaaagttttgtaggggaagaaaagacgaggccttgacgacggcttgtctatttcttgcctgccaagaagagggctttccccgaaccctaaaggaagtcgccacggttgggaatggggccactaagaaagagattaacaaaatcaaggaacagttgaagaaagtattggagattgatagcaaaatcatacatgccgaggaccttacgcggcggagttgctcttccattggtatgaaacatcaagggatgaaggcggtgaacgagacactggagaagttgaaggagtatgatataaggaggacccccaagtcggttttggctgcggttatgtacatgacggtgcagctctcaaacgacgtgacaagccttaaagaggtatcgcaagccgctgatgttgcggtaggaacaactaaaaagacatacaaggatctttatccctatgcttcaaggataatacccagctggttcgccaagttggaggacatcaagaaacttcgcatcccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000769 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006949 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009960 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046686 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIB TF_Zn_Ribbon

Protein Analysis

316

Amino Acids

35.26

Weight (kDa)

8.86

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41630
fragaria_vesca	FvH4_6g46960
prunus_persica	Prupe.3G255700_v2.0.a1 Prupe.3G255800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0165941
rosa_laevigata	RLG00000021571
rosa_multiflora	Rmu_sc0006218.1_g000012
rosa_roxburghii	Rroxscaffold_2G00085290
rosa_rugosa	Rorug02G0519300
rosa_samantha	Rh2AG585000 Rh2BG596800 Rh2CG567600 Rh2DG607000
rosa_wichuraiana	Rw2G048780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	751
AccB1I	GGYRCC	1 cut(s)	236
AccII	CGCG	2 cut(s)	11, 652
AclWI	GGATC	1 cut(s)	879
AcoI	YGGCCR	1 cut(s)	295
AcyI	GRCGYC	2 cut(s)	201, 252
AfaI	GTAC	1 cut(s)	776
AfiI	CCNNNNNNNGG	5 cut(s)	147, 514, 552, 754, 817
AgeI	ACCGGT	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	601, 724, 891
AhdI	GACNNNNNGTC	1 cut(s)	489
AjiI	CACGTC	1 cut(s)	802
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AluBI	AGCT	4 cut(s)	353, 377, 790, 906
AluI	AGCT	4 cut(s)	353, 377, 790, 906
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	4 cut(s)	19, 296, 345, 701
AlwI	GGATC	1 cut(s)	879
AoxI	GGCC	5 cut(s)	3, 229, 295, 474, 561
ApeKI	GCWGC	3 cut(s)	322, 764, 787
ArsI	GACNNNNNNTTYG	2 cut(s)	249, 281
AsiGI	ACCGGT	1 cut(s)	194
AspS9I	GGNCC	4 cut(s)	70, 561, 643, 744
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	3 cut(s)	209, 337, 712
AsuII	TTCGAA	1 cut(s)	371
AsuNHI	GCTAGC	1 cut(s)	377
AvaII	GGWCC	3 cut(s)	70, 643, 744
BanI	GGYRCC	1 cut(s)	236
BauI	CACGAG	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	3 cut(s)	334, 751, 799
BccI	CCATC	2 cut(s)	304, 371
BceAI	ACGGC	3 cut(s)	188, 241, 501
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	4 cut(s)	19, 296, 345, 701
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	6 cut(s)	229, 323, 653, 765, 788, 831
BlsI	GCNGC	6 cut(s)	230, 324, 654, 766, 789, 832
Bme1390I	CCNGG	1 cut(s)	299
Bme18I	GGWCC	3 cut(s)	70, 643, 744
BmeRI	GACNNNNNGTC	1 cut(s)	489
BmgBI	CACGTC	1 cut(s)	802
BmgT120I	GGNCC	4 cut(s)	70, 561, 643, 744
BmiI	GGNNCC	3 cut(s)	238, 562, 746
BmrFI	CCNGG	1 cut(s)	299
BmtI	GCTAGC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	734
Bpu14I	TTCGAA	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	299
BsaBI	GATNNNNATC	1 cut(s)	876
BsaHI	GRCGYC	2 cut(s)	201, 252
BsaI	GGTCTC	2 cut(s)	19, 345
BsaJI	CCNNGG	3 cut(s)	232, 546, 639
BsaWI	WCCGGW	1 cut(s)	194
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	5 cut(s)	147, 514, 552, 754, 817
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	717
Bse8I	GATNNNNATC	1 cut(s)	876
BseDI	CCNNGG	3 cut(s)	232, 546, 639
BseGI	GGATG	2 cut(s)	696, 942
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	5 cut(s)	147, 514, 552, 754, 817
BseNI	ACTGG	1 cut(s)	717
BseX3I	CGGCCG	1 cut(s)	295
BseXI	GCAGC	3 cut(s)	334, 751, 799
BseYI	CCCAGC	1 cut(s)	902
BsgI	GTGCAG	2 cut(s)	335, 806
Bsh1236I	CGCG	2 cut(s)	11, 652
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	5 cut(s)	5, 231, 297, 476, 563
BshNI	GGYRCC	1 cut(s)	236
BshTI	ACCGGT	1 cut(s)	194
BsiEI	CGRYCG	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	418
BsiSI	CCGG	2 cut(s)	195, 298
BslI	CCNNNNNNNGG	5 cut(s)	147, 514, 552, 754, 817
BsmAI	GTCTC	4 cut(s)	19, 296, 345, 701
BsnI	GGCC	5 cut(s)	5, 231, 297, 476, 563
Bso31I	GGTCTC	2 cut(s)	19, 345
Bsp119I	TTCGAA	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	774
Bsp143I	GATC	3 cut(s)	25, 243, 871
BspANI	GGCC	5 cut(s)	5, 231, 297, 476, 563
BspFNI	CGCG	2 cut(s)	11, 652
BspLI	GGNNCC	3 cut(s)	238, 562, 746
BspOI	GCTAGC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	879
BspQI	GCTCTTC	1 cut(s)	670
BspT104I	TTCGAA	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	236
BspTNI	GGTCTC	2 cut(s)	19, 345
BsrFI	RCCGGY	1 cut(s)	194
BsrGI	TGTACA	1 cut(s)	774
BsrI	ACTGG	1 cut(s)	717
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	232, 546, 639
BssMI	GATC	3 cut(s)	25, 243, 871
BssNI	GRCGYC	2 cut(s)	201, 252
BssSI	CACGAG	1 cut(s)	411
Bst2BI	CACGAG	1 cut(s)	411
Bst4CI	ACNGT	5 cut(s)	64, 403, 550, 597, 784
Bst6I	CTCTTC	3 cut(s)	219, 507, 670
BstACI	GRCGYC	2 cut(s)	201, 252
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstAUI	TGTACA	1 cut(s)	774
BstBI	TTCGAA	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	379, 505, 828
BstDEI	CTNAG	1 cut(s)	567
BstDSI	CCRYGG	1 cut(s)	546
BstENI	CCTNNNNNAGG	1 cut(s)	815
BstF5I	GGATG	2 cut(s)	696, 942
BstFNI	CGCG	2 cut(s)	11, 652
BstKTI	GATC	3 cut(s)	28, 246, 874
BstMAI	GTCTC	4 cut(s)	19, 296, 345, 701
BstMBI	GATC	3 cut(s)	25, 243, 871
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 102, 234, 322, 365, 374, 839
BstNSI	RCATGY	2 cut(s)	385, 638
BstSCI	CCNGG	1 cut(s)	297
BstUI	CGCG	2 cut(s)	11, 652
BstV1I	GCAGC	3 cut(s)	334, 751, 799
BstX2I	RGATCY	1 cut(s)	871
BstYI	RGATCY	1 cut(s)	871
BstZI	CGGCCG	1 cut(s)	295
BsuRI	GGCC	5 cut(s)	5, 231, 297, 476, 563
BtgI	CCRYGG	1 cut(s)	546
BtgZI	GCGATG	1 cut(s)	349
BtrI	CACGTC	1 cut(s)	802
BtsCI	GGATG	2 cut(s)	696, 942
BtsIMutI	CAGTG	2 cut(s)	408, 710
Cac8I	GCNNGC	3 cut(s)	379, 505, 828
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	4 cut(s)	70, 561, 643, 744
CseI	GACGC	2 cut(s)	209, 260
Csp6I	GTAC	1 cut(s)	775
CspAI	ACCGGT	1 cut(s)	194
CviAII	CATG	4 cut(s)	241, 382, 635, 778
CviQI	GTAC	1 cut(s)	775
DdeI	CTNAG	1 cut(s)	567
DpnI	GATC	3 cut(s)	27, 245, 873
DpnII	GATC	3 cut(s)	25, 243, 871
DrdI	GACNNNNNNGTC	1 cut(s)	751
DriI	GACNNNNNGTC	1 cut(s)	489
DseDI	GACNNNNNNGTC	1 cut(s)	751
EaeI	YGGCCR	1 cut(s)	295
EagI	CGGCCG	1 cut(s)	295
Eam1104I	CTCTTC	3 cut(s)	219, 507, 670
Eam1105I	GACNNNNNGTC	1 cut(s)	489
EarI	CTCTTC	3 cut(s)	219, 507, 670
EciI	GGCGGA	1 cut(s)	670
EclXI	CGGCCG	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	476
Eco31I	GGTCTC	2 cut(s)	19, 345
Eco47I	GGWCC	3 cut(s)	70, 643, 744
Eco52I	CGGCCG	1 cut(s)	295
EcoNI	CCTNNNNNAGG	1 cut(s)	815
EcoO109I	RGGNCCY	2 cut(s)	643, 744
FaeI	CATG	4 cut(s)	244, 385, 638, 781
FatI	CATG	4 cut(s)	240, 381, 634, 777
Fnu4HI	GCNGC	6 cut(s)	229, 323, 653, 765, 788, 831
FokI	GGATG	2 cut(s)	703, 929
Fsp4HI	GCNGC	6 cut(s)	229, 323, 653, 765, 788, 831
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	6 cut(s)	229, 323, 653, 765, 788, 831
GsaI	CCCAGC	1 cut(s)	906
GsuI	CTGGAG	1 cut(s)	734
HaeIII	GGCC	5 cut(s)	5, 231, 297, 476, 563
HapII	CCGG	2 cut(s)	195, 298
HgaI	GACGC	2 cut(s)	209, 260
Hin1I	GRCGYC	2 cut(s)	201, 252
Hin1II	CATG	4 cut(s)	244, 385, 638, 781
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	1 cut(s)	51
HpaI	GTTAAC	1 cut(s)	304
HpaII	CCGG	2 cut(s)	195, 298
HphI	GGTGA	3 cut(s)	209, 337, 712
Hpy166II	GTNNAC	2 cut(s)	304, 703
Hpy188I	TCNGA	3 cut(s)	19, 100, 250
Hpy188III	TCNNGA	3 cut(s)	116, 285, 931
Hpy8I	GTNNAC	2 cut(s)	304, 703
Hpy99I	CGWCG	5 cut(s)	134, 254, 269, 487, 803
HpyAV	CCTTC	2 cut(s)	688, 718
HpyCH4III	ACNGT	5 cut(s)	64, 403, 550, 597, 784
HpyCH4IV	ACGT	2 cut(s)	264, 801
HpyCH4V	TGCA	4 cut(s)	36, 45, 316, 787
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 102, 234, 322, 365, 374, 839
HpyF3I	CTNAG	1 cut(s)	567
HpySE526I	ACGT	2 cut(s)	264, 801
Hsp92I	GRCGYC	2 cut(s)	201, 252
Hsp92II	CATG	4 cut(s)	244, 385, 638, 781
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	25, 243, 871
LguI	GCTCTTC	1 cut(s)	670
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	7 cut(s)	208, 311, 345, 517, 698, 892, 916
Lsp1109I	GCAGC	3 cut(s)	334, 751, 799
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	2 cut(s)	264, 801
MaeIII	GTNAC	2 cut(s)	197, 802
MalI	GATC	3 cut(s)	27, 245, 873
MboI	GATC	3 cut(s)	25, 243, 871
MboII	GAAGA	5 cut(s)	206, 474, 524, 613, 657
MflI	RGATCY	1 cut(s)	871
MhlI	GDGCHC	1 cut(s)	418
MmeI	TCCRAC	3 cut(s)	42, 273, 900
MseI	TTAA	3 cut(s)	303, 579, 813
MslI	CAYNNNNRTG	2 cut(s)	674, 782
MspA1I	CMGCKG	2 cut(s)	833, 906
MspI	CCGG	2 cut(s)	195, 298
MspR9I	CCNGG	1 cut(s)	299
MvnI	CGCG	2 cut(s)	11, 652
MwoI	GCNNNNNNNGC	7 cut(s)	42, 102, 234, 322, 365, 374, 839
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	3 cut(s)	25, 243, 871
NheI	GCTAGC	1 cut(s)	377
NlaIII	CATG	4 cut(s)	244, 385, 638, 781
NlaIV	GGNNCC	3 cut(s)	238, 562, 746
NmeAIII	GCCGAG	4 cut(s)	169, 213, 273, 664
NmuCI	GTSAC	2 cut(s)	197, 802
NspI	RCATGY	2 cut(s)	385, 638
NspV	TTCGAA	1 cut(s)	371
PceI	AGGCCT	1 cut(s)	476
PciSI	GCTCTTC	1 cut(s)	670
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	51
PflFI	GACNNNGTC	1 cut(s)	203
PinAI	ACCGGT	1 cut(s)	194
PkrI	GCNGC	6 cut(s)	230, 324, 654, 766, 789, 832
PpuMI	RGGWCCY	2 cut(s)	643, 744
Psp5II	RGGWCCY	2 cut(s)	643, 744
PspFI	CCCAGC	1 cut(s)	902
PspN4I	GGNNCC	3 cut(s)	238, 562, 746
PspPI	GGNCC	4 cut(s)	70, 561, 643, 744
PspPPI	RGGWCCY	2 cut(s)	643, 744
PsuI	RGATCY	1 cut(s)	871
PsyI	GACNNNGTC	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	906
RsaI	GTAC	1 cut(s)	776
RsaNI	GTAC	1 cut(s)	775
RseI	CAYNNNNRTG	2 cut(s)	674, 782
SapI	GCTCTTC	1 cut(s)	670
SaqAI	TTAA	3 cut(s)	303, 579, 813
SatI	GCNGC	6 cut(s)	229, 323, 653, 765, 788, 831
Sau3AI	GATC	3 cut(s)	25, 243, 871
Sau96I	GGNCC	4 cut(s)	70, 561, 643, 744
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	418
SfuI	TTCGAA	1 cut(s)	371
SgrAI	CRCCGGYG	1 cut(s)	194
SinI	GGWCC	3 cut(s)	70, 643, 744
SmiMI	CAYNNNNRTG	2 cut(s)	674, 782
SseBI	AGGCCT	1 cut(s)	476
SspMI	CTAG	1 cut(s)	378
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	1 cut(s)	297
TaaI	ACNGT	5 cut(s)	64, 403, 550, 597, 784
TaiI	ACGT	2 cut(s)	267, 804
TaqI	TCGA	4 cut(s)	117, 132, 284, 371
TatI	WGTACW	1 cut(s)	774
TauI	GCSGC	3 cut(s)	231, 655, 833
TfiI	GAWTC	1 cut(s)	51
Tru1I	TTAA	3 cut(s)	303, 579, 813
Tru9I	TTAA	3 cut(s)	303, 579, 813
TscAI	CASTG	2 cut(s)	408, 717
TseFI	GTSAC	2 cut(s)	197, 802
TseI	GCWGC	3 cut(s)	322, 764, 787
Tsp45I	GTSAC	2 cut(s)	197, 802
TspDTI	ATGAA	3 cut(s)	410, 692, 707
TspRI	CASTG	2 cut(s)	408, 717
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	3 cut(s)	70, 643, 744
XagI	CCTNNNNNAGG	1 cut(s)	815
XceI	RCATGY	2 cut(s)	385, 638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	757
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.