Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016543

Physical Location & Seq

Genomic Coordinates Forward (+)

35716321 .. 35718292

Gene Structure 1972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCGGCCTACGCCGGCTCCGACACCGACCAGTACTGCAAAGACTGCAACCGAATCACATTGACCATCTTGGACCACCGTCAAGGCGACACCATCTGCTCCGAGTGCGGTTTGGTTCTCGAATCCCACTTCGTCGACACAACCGCCGAGTGGCGTGTCTTCGCCGACTCCGAAAACGACAACGACCCTCAACGCACTGGCGACCCCGTCAACCCTCTCCTCCACAATGGCGGACTCGGCACCATCATCTCGGAAACCAAAAAGAATAATAATAATAACTCTTCTGATAACAATCAATCTAGAAGCTTCGGAAGGGCTAACAAGATGGTGCAGAAGCAGCAGAACCCTGATAGAACTCTGACTCAAGCTTTCGGGGCGATATCGTCGAAAGCTTCCATGCTAGGGCTAATGAACACGGTGGTGAGTCGTGCGCAGCAGATTTACAAGGAGGCGGATGACAAGAAGTTTTGTAAGGGGAGAAAAGATGAGGCCCTCACGACGGCGTGTCTGTTTCTTGCGTGCCAAGAAGAGGGGTTTCCAAGAACCCTAAAGGAAATCGCGACGGTTGGGAATGGTGCTAGTAAGAAGGAGATTAACAAGATGAAGGAGCAGTTGAAGAAGGTGTTGGAGATTGATAGCAAGATTATTCATGCCGAGGATCTTACGAGGAGGAGCTGCTCTTTGATTGGGATGAAGCATTTGGGAATGAAGGCGGTGAATGAGACATTGGACAAGTTGAAGGAGTTTGATATAAGGAGGACGCCTAAGTCGGTTTTGGCTGCGGTTATGTACATGGTTGTGCAGCTCTCAAATGATGTCACAAGTTTGAAAGAGGTATCGCAAGCCGCTGATGTTGCGGTTGGAACAACTAAAAAGACATACAAGGATCTTTATCCCTATGCTTCAAGGATAATACCCAGCTGGTTTGCCAAGTTGGAGGAAATCAATTCGAAACTTTGCATCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000769 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006949 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009960 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046686 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIB TF_Zn_Ribbon

Protein Analysis

323

Amino Acids

35.81

Weight (kDa)

8.46

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_Ribbon_TF	PF08271	12 - 52	3.7e-11	TFIIB zinc-binding
TFIIB	PF00382	117 - 191	2.8e-16	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41630
fragaria_vesca	FvH4_6g46960
prunus_persica	Prupe.3G255700_v2.0.a1 Prupe.3G255800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0165941
rosa_laevigata	RLG00000021571
rosa_multiflora	Rmu_sc0006218.1_g000012
rosa_roxburghii	Rroxscaffold_2G00085290
rosa_rugosa	Rorug02G0519300
rosa_samantha	Rh2AG585000 Rh2BG596800 Rh2CG567600 Rh2DG607000
rosa_wichuraiana	Rw2G048780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	766
Acc16I	TGCGCA	1 cut(s)	432
AccB1I	GGYRCC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	560
AciI	CCGC	9 cut(s)	5, 108, 144, 231, 452, 713, 782, 846, 857
AclWI	GGATC	2 cut(s)	666, 894
AcyI	GRCGYC	1 cut(s)	761
AfaI	GTAC	2 cut(s)	35, 791
AfiI	CCNNNNNNNGG	4 cut(s)	150, 402, 499, 529
AgsI	TTSAA	4 cut(s)	616, 739, 829, 906
AhdI	GACNNNNNGTC	1 cut(s)	504
AjuI	GAANNNNNNNTTGG	4 cut(s)	608, 640, 710, 742
AleI	CACNNNNGTG	1 cut(s)	419
AluBI	AGCT	6 cut(s)	306, 368, 392, 675, 805, 921
AluI	AGCT	6 cut(s)	306, 368, 392, 675, 805, 921
Alw26I	GTCTC	1 cut(s)	716
AlwI	GGATC	2 cut(s)	666, 894
AoxI	GGCC	2 cut(s)	6, 489
ApeKI	GCWGC	5 cut(s)	337, 433, 675, 779, 802
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	2 cut(s)	73, 490
AsuHPI	GGTGA	2 cut(s)	433, 727
AsuII	TTCGAA	1 cut(s)	950
AvaII	GGWCC	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	151
BbvI	GCAGC	5 cut(s)	349, 445, 662, 766, 814
BccI	CCATC	4 cut(s)	74, 101, 251, 319
BceAI	ACGGC	1 cut(s)	516
BcoDI	GTCTC	1 cut(s)	716
BfaI	CTAG	3 cut(s)	300, 401, 579
BisI	GCNGC	7 cut(s)	6, 338, 434, 676, 780, 803, 846
BlsI	GCNGC	7 cut(s)	7, 339, 435, 677, 781, 804, 847
BmcAI	AGTACT	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	73
BmeRI	GACNNNNNGTC	1 cut(s)	504
BmgT120I	GGNCC	2 cut(s)	73, 490
BmiI	GGNNCC	2 cut(s)	19, 241
BoxI	GACNNNNGTC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	151
Bpu14I	TTCGAA	1 cut(s)	950
BpuEI	CTTGAG	1 cut(s)	348
BsaBI	GATNNNNATC	2 cut(s)	291, 891
BsaHI	GRCGYC	1 cut(s)	761
BsaJI	CCNNGG	1 cut(s)	654
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 402, 499, 529
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	31, 202
Bse8I	GATNNNNATC	2 cut(s)	291, 891
BseDI	CCNNGG	1 cut(s)	654
BseGI	GGATG	3 cut(s)	460, 696, 960
BseJI	GATNNNNATC	2 cut(s)	291, 891
BseLI	CCNNNNNNNGG	4 cut(s)	150, 402, 499, 529
BseNI	ACTGG	2 cut(s)	31, 202
BseRI	GAGGAG	3 cut(s)	209, 682, 685
BseXI	GCAGC	5 cut(s)	349, 445, 662, 766, 814
BseYI	CCCAGC	1 cut(s)	917
BsgI	GTGCAG	2 cut(s)	350, 821
Bsh1236I	CGCG	1 cut(s)	560
BshFI	GGCC	2 cut(s)	8, 491
BshNI	GGYRCC	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	4 cut(s)	150, 402, 499, 529
BsmAI	GTCTC	1 cut(s)	716
BsnI	GGCC	2 cut(s)	8, 491
Bsp119I	TTCGAA	1 cut(s)	950
Bsp1407I	TGTACA	1 cut(s)	789
Bsp143I	GATC	2 cut(s)	658, 886
Bsp68I	TCGCGA	1 cut(s)	560
BspACI	CCGC	9 cut(s)	5, 108, 144, 231, 452, 713, 782, 846, 857
BspANI	GGCC	2 cut(s)	8, 491
BspFNI	CGCG	1 cut(s)	560
BspLI	GGNNCC	2 cut(s)	19, 241
BspPI	GGATC	2 cut(s)	666, 894
BspT104I	TTCGAA	1 cut(s)	950
BspT107I	GGYRCC	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	789
BsrI	ACTGG	2 cut(s)	31, 202
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	654
BssMI	GATC	2 cut(s)	658, 886
BssNI	GRCGYC	1 cut(s)	761
Bst4CI	ACNGT	3 cut(s)	80, 418, 565
Bst6I	CTCTTC	2 cut(s)	286, 522
BstACI	GRCGYC	1 cut(s)	761
BstAPI	GCANNNNNTGC	1 cut(s)	45
BstAUI	TGTACA	1 cut(s)	789
BstBI	TTCGAA	1 cut(s)	950
BstC8I	GCNNGC	3 cut(s)	16, 520, 843
BstDEI	CTNAG	1 cut(s)	765
BstF5I	GGATG	3 cut(s)	460, 696, 960
BstFNI	CGCG	1 cut(s)	560
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	2 cut(s)	661, 889
BstMAI	GTCTC	1 cut(s)	716
BstMBI	GATC	2 cut(s)	658, 886
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 45, 105, 237, 337, 374, 854
BstPAI	GACNNNNGTC	1 cut(s)	78
BstUI	CGCG	1 cut(s)	560
BstV1I	GCAGC	5 cut(s)	349, 445, 662, 766, 814
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	2 cut(s)	658, 886
BstYI	RGATCY	2 cut(s)	658, 886
BsuRI	GGCC	2 cut(s)	8, 491
BtsCI	GGATG	3 cut(s)	460, 696, 960
BtsIMutI	CAGTG	1 cut(s)	195
BtuMI	TCGCGA	1 cut(s)	560
Cac8I	GCNNGC	3 cut(s)	16, 520, 843
CfoI	GCGC	1 cut(s)	433
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	73, 490
CseI	GACGC	1 cut(s)	769
Csp6I	GTAC	2 cut(s)	34, 790
CviAII	CATG	3 cut(s)	397, 650, 793
CviQI	GTAC	2 cut(s)	34, 790
DdeI	CTNAG	1 cut(s)	765
DpnI	GATC	2 cut(s)	660, 888
DpnII	GATC	2 cut(s)	658, 886
DrdI	GACNNNNNNGTC	1 cut(s)	766
DriI	GACNNNNNGTC	1 cut(s)	504
DseDI	GACNNNNNNGTC	1 cut(s)	766
Eam1104I	CTCTTC	2 cut(s)	286, 522
Eam1105I	GACNNNNNGTC	1 cut(s)	504
EarI	CTCTTC	2 cut(s)	286, 522
EciI	GGCGGA	2 cut(s)	246, 467
Eco32I	GATATC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRV	GATATC	1 cut(s)	381
FaeI	CATG	3 cut(s)	400, 653, 796
FaiI	YATR	7 cut(s)	398, 651, 752, 788, 794, 880, 900
FatI	CATG	3 cut(s)	396, 649, 792
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	7 cut(s)	6, 338, 434, 676, 780, 803, 846
FokI	GGATG	3 cut(s)	467, 703, 947
Fsp4HI	GCNGC	7 cut(s)	6, 338, 434, 676, 780, 803, 846
FspBI	CTAG	3 cut(s)	300, 401, 579
FspI	TGCGCA	1 cut(s)	432
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	7 cut(s)	6, 338, 434, 676, 780, 803, 846
GsaI	CCCAGC	1 cut(s)	921
HaeIII	GGCC	2 cut(s)	8, 491
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	1 cut(s)	769
HhaI	GCGC	1 cut(s)	433
Hin1I	GRCGYC	1 cut(s)	761
Hin1II	CATG	3 cut(s)	400, 653, 796
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HincII	GTYRAC	2 cut(s)	136, 211
HindII	GTYRAC	2 cut(s)	136, 211
HindIII	AAGCTT	3 cut(s)	304, 366, 390
HinfI	GANTC	6 cut(s)	54, 122, 167, 234, 361, 424
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	2 cut(s)	433, 727
Hpy166II	GTNNAC	2 cut(s)	136, 211
Hpy188I	TCNGA	7 cut(s)	22, 103, 172, 253, 286, 311, 360
Hpy188III	TCNNGA	4 cut(s)	119, 300, 496, 559
Hpy8I	GTNNAC	2 cut(s)	136, 211
Hpy99I	CGWCG	4 cut(s)	137, 388, 502, 565
HpyAV	CCTTC	6 cut(s)	306, 580, 598, 613, 703, 733
HpyCH4III	ACNGT	3 cut(s)	80, 418, 565
HpyCH4V	TGCA	5 cut(s)	39, 48, 331, 802, 960
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 45, 105, 237, 337, 374, 854
HpyF3I	CTNAG	1 cut(s)	765
Hsp92I	GRCGYC	1 cut(s)	761
Hsp92II	CATG	3 cut(s)	400, 653, 796
HspAI	GCGC	1 cut(s)	431
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	658, 886
LmnI	GCTCC	4 cut(s)	23, 104, 607, 672
LpnPI	CCDG	6 cut(s)	28, 44, 183, 360, 907, 931
Lsp1109I	GCAGC	5 cut(s)	349, 445, 662, 766, 814
MaeI	CTAG	3 cut(s)	300, 401, 579
MaeIII	GTNAC	1 cut(s)	817
MalI	GATC	2 cut(s)	660, 888
MboI	GATC	2 cut(s)	658, 886
MboII	GAAGA	4 cut(s)	151, 273, 539, 628
MflI	RGATCY	2 cut(s)	658, 886
MluCI	AATT	1 cut(s)	946
MlyI	GAGTC	4 cut(s)	161, 228, 355, 433
MmeI	TCCRAC	4 cut(s)	45, 606, 841, 915
MroNI	GCCGGC	1 cut(s)	14
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	2 cut(s)	419, 797
MspA1I	CMGCKG	2 cut(s)	848, 921
MspI	CCGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	560
MwoI	GCNNNNNNNGC	7 cut(s)	11, 45, 105, 237, 337, 374, 854
NaeI	GCCGGC	1 cut(s)	16
NdeII	GATC	2 cut(s)	658, 886
NgoMIV	GCCGGC	1 cut(s)	14
NlaIII	CATG	3 cut(s)	400, 653, 796
NlaIV	GGNNCC	2 cut(s)	19, 241
NmeAIII	GCCGAG	3 cut(s)	172, 216, 679
NmuCI	GTSAC	1 cut(s)	817
NruI	TCGCGA	1 cut(s)	560
NsbI	TGCGCA	1 cut(s)	432
NspV	TTCGAA	1 cut(s)	950
OliI	CACNNNNGTG	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 168
PdiI	GCCGGC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	54, 122
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	7 cut(s)	7, 339, 435, 677, 781, 804, 847
PleI	GAGTC	4 cut(s)	161, 228, 355, 432
PpsI	GAGTC	4 cut(s)	161, 228, 355, 432
PshAI	GACNNNNGTC	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	917
PspN4I	GGNNCC	2 cut(s)	19, 241
PspPI	GGNCC	2 cut(s)	73, 490
PsuI	RGATCY	2 cut(s)	658, 886
PsyI	GACNNNGTC	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	921
RruI	TCGCGA	1 cut(s)	560
RsaI	GTAC	2 cut(s)	35, 791
RsaNI	GTAC	2 cut(s)	34, 790
RseI	CAYNNNNRTG	2 cut(s)	419, 797
SalI	GTCGAC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	7 cut(s)	6, 338, 434, 676, 780, 803, 846
Sau3AI	GATC	2 cut(s)	658, 886
Sau96I	GGNCC	2 cut(s)	73, 490
ScaI	AGTACT	1 cut(s)	35
SchI	GAGTC	4 cut(s)	161, 228, 355, 433
SetI	ASST	8 cut(s)	308, 370, 394, 624, 677, 807, 837, 923
SfuI	TTCGAA	1 cut(s)	950
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	2 cut(s)	419, 797
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	1 cut(s)	946
SsiI	CCGC	9 cut(s)	5, 108, 144, 231, 452, 713, 782, 846, 857
SspMI	CTAG	3 cut(s)	300, 401, 579
TaaI	ACNGT	3 cut(s)	80, 418, 565
TaqI	TCGA	4 cut(s)	120, 135, 386, 950
TasI	AATT	1 cut(s)	946
TatI	WGTACW	2 cut(s)	33, 789
TauI	GCSGC	2 cut(s)	8, 848
TfiI	GAWTC	2 cut(s)	54, 122
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	817
TseI	GCWGC	5 cut(s)	337, 433, 675, 779, 802
Tsp45I	GTSAC	1 cut(s)	817
TspDTI	ATGAA	5 cut(s)	425, 617, 638, 707, 722
TspRI	CASTG	1 cut(s)	202
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	73
XbaI	TCTAGA	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	3 cut(s)	300, 401, 579
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.