AT2G43310

Ribosomal L18p L5e family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0019643
Physical Location & Seq
Forward (+)
17995901 .. 17996688
788 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43310.1

Sequence Viewer

Length: 402 bp
ATGAACGGAACCCACCGTCATCATCTTCTTCAACTAGTCTTATCATGCCGTAAGATCACAGCTCAAGTGACTCAACCAGGATCCTCAACGATCATAGCAATGGCTTCATCCTCCGAGCAAGAATTCCTAGCAAAAAGCCGCGCCAATCTCTACCGATTCCCTCACTCCAACCATTTCTGGGACTCAAAGACCGCTTCACGCGTCGGCGAGAAGCTTGGGTTACGTTTAAGAGAGCTTGGTGTTGACGTAGTCTCCATTGATGCAGACGAAGAAATCTCTCGGCCTATTCACCATCGCAAAAGAGTTCTTCCGTTGTTCGATTCCGTTCGTCGTACCGGTATCAGAGTCGACGGAACTGAGCAATTGAACGATATTAGTGTCCCAATTATTCCCAAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.0

Weight (kDa)

9.88

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019643)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43310
fragaria_vesca FvH4_4g10741
malus_domestica MD04G1040200.v1.1 MD07G1010900.v1.1 MD07G1093600.v1.1 MD08G1180100.v1.1
prunus_persica Prupe.1G192700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 348
AccII CGCG 2 cut(s) 141, 201
AciI CCGC 2 cut(s) 139, 192
AclWI GGATC 2 cut(s) 75, 88
AcsI RAATTY 1 cut(s) 122
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 1 cut(s) 178
AflIII ACRYGT 1 cut(s) 199
AgeI ACCGGT 1 cut(s) 335
AgsI TTSAA 2 cut(s) 32, 367
AhlI ACTAGT 1 cut(s) 34
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 3 cut(s) 62, 214, 235
AluI AGCT 3 cut(s) 62, 214, 235
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 2 cut(s) 75, 88
AoxI GGCC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 122
AsiGI ACCGGT 1 cut(s) 335
AspLEI GCGC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 281
BamHI GGATCC 1 cut(s) 80
BccI CCATC 1 cut(s) 300
BceAI ACGGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 256
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 2 cut(s) 35, 128
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 78
BmiI GGNNCC 2 cut(s) 10, 82
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse118I RCCGGY 1 cut(s) 335
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 348
Bsh1236I CGCG 2 cut(s) 141, 201
BshFI GGCC 1 cut(s) 283
BshTI ACCGGT 1 cut(s) 335
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 2 cut(s) 194, 365
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 2 cut(s) 194, 365
BsnI GGCC 1 cut(s) 283
Bsp143I GATC 3 cut(s) 54, 80, 90
BspACI CCGC 2 cut(s) 139, 192
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 2 cut(s) 141, 201
BspLI GGNNCC 2 cut(s) 10, 82
BspPI GGATC 2 cut(s) 75, 88
BsrDI GCAATG 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 335
BssAI RCCGGY 1 cut(s) 335
BssMI GATC 3 cut(s) 54, 80, 90
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 107
BstFNI CGCG 2 cut(s) 141, 201
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 3 cut(s) 57, 83, 93
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 3 cut(s) 54, 80, 90
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstUI CGCG 2 cut(s) 141, 201
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 1 cut(s) 283
BtgZI GCGATG 1 cut(s) 278
BtsCI GGATG 1 cut(s) 107
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 335
CseI GACGC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 333
CspAI ACCGGT 1 cut(s) 335
CviAII CATG 1 cut(s) 45
CviJI RGCY 6 cut(s) 62, 104, 138, 214, 235, 283
CviKI_1 RGCY 6 cut(s) 62, 104, 138, 214, 235, 283
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 1 cut(s) 357
DpnI GATC 3 cut(s) 56, 82, 92
DpnII GATC 3 cut(s) 54, 80, 90
EcoRI GAATTC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 76
FaeI CATG 1 cut(s) 48
FaiI YATR 2 cut(s) 46, 95
FaqI GGGAC 2 cut(s) 194, 365
FatI CATG 1 cut(s) 44
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 1 cut(s) 139
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 139
FspBI CTAG 2 cut(s) 35, 128
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 139
HaeIII GGCC 1 cut(s) 283
HapII CCGG 1 cut(s) 336
HgaI GACGC 1 cut(s) 190
HhaI GCGC 1 cut(s) 143
Hin1II CATG 1 cut(s) 48
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HincII GTYRAC 2 cut(s) 244, 349
HindII GTYRAC 2 cut(s) 244, 349
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 5 cut(s) 70, 156, 182, 320, 345
HpaII CCGG 1 cut(s) 336
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 2 cut(s) 244, 349
Hpy188I TCNGA 2 cut(s) 115, 344
Hpy8I GTNNAC 2 cut(s) 244, 349
Hpy99I CGWCG 3 cut(s) 206, 333, 353
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 2 cut(s) 223, 246
HpyCH4V TGCA 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 2 cut(s) 223, 246
Hsp92II CATG 1 cut(s) 48
HspAI GCGC 1 cut(s) 141
Kzo9I GATC 3 cut(s) 54, 80, 90
LpnPI CCDG 4 cut(s) 63, 90, 163, 349
LweI GCATC 1 cut(s) 250
MaeI CTAG 2 cut(s) 35, 128
MaeII ACGT 2 cut(s) 223, 246
MaeIII GTNAC 2 cut(s) 67, 219
MalI GATC 3 cut(s) 56, 82, 92
MboI GATC 3 cut(s) 54, 80, 90
MboII GAAGA 4 cut(s) 17, 20, 281, 299
MfeI CAATTG 1 cut(s) 362
MflI RGATCY 1 cut(s) 80
MluCI AATT 4 cut(s) 122, 362, 384, 397
MluI ACGCGT 1 cut(s) 199
MlyI GAGTC 3 cut(s) 64, 176, 354
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 3 cut(s) 94, 121, 171
MseI TTAA 1 cut(s) 227
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 78
MunI CAATTG 1 cut(s) 362
MvaI CCWGG 1 cut(s) 78
MvnI CGCG 2 cut(s) 141, 201
NdeII GATC 3 cut(s) 54, 80, 90
NlaIII CATG 1 cut(s) 48
NlaIV GGNNCC 2 cut(s) 10, 82
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 156, 320
PflFI GACNNNGTC 1 cut(s) 248
PinAI ACCGGT 1 cut(s) 335
PkrI GCNGC 1 cut(s) 140
PleI GAGTC 3 cut(s) 64, 176, 353
PpsI GAGTC 3 cut(s) 64, 176, 353
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 10, 82
PsuI RGATCY 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
RseI CAYNNNNRTG 1 cut(s) 98
SalI GTCGAC 1 cut(s) 347
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 3 cut(s) 54, 80, 90
SchI GAGTC 3 cut(s) 64, 176, 354
ScrFI CCNGG 1 cut(s) 78
SetI ASST 5 cut(s) 64, 216, 226, 237, 249
SfaNI GCATC 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 4 cut(s) 122, 362, 384, 397
SsiI CCGC 2 cut(s) 139, 192
SspMI CTAG 2 cut(s) 35, 128
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 2 cut(s) 226, 249
TaqI TCGA 2 cut(s) 318, 348
TasI AATT 4 cut(s) 122, 362, 384, 397
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 2 cut(s) 156, 320
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 17, 96
TspGWI ACGGA 4 cut(s) 21, 300, 313, 366
Tth111I GACNNNGTC 1 cut(s) 248
XapI RAATTY 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 348
XspI CTAG 2 cut(s) 35, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.