MD07G1010900.v1.1

Ribosomal L18p L5e family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0019643
Physical Location & Seq
Forward (+)
991918 .. 992262
345 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1010900.v1.1.491

Sequence Viewer

Length: 345 bp
ATGTCGAGAAACCACCATGTCCTCCGCCTGGTGCTCTCATGCCGCAAAATCACAGCACAGGTGACGAGCCGCAGCAGCTCCTCAATCATAACCATGGCCTCCTCCTCCGAGCAAGAGTTTGTCGTCCTCTACCCATCCAATCTCAACCGCTTCCCTCGCTCCCAAACCTTCTGGGACGCCAAGGTCGCCTCTCACGTCGGCGAGAAGCTCGCCCTCCGTCTCCAAGATATTGACGTCACCGGTGTTGAGATCGACCTCTGCGAAGAGCTTTCCATGCTCGTCCACCACCGCATCAGGGTGTTGCCGCTCTTCGACTCTATTCAGGCCTATCCACCACGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.93

Weight (kDa)

8.77

Isoelectric Point (pI)

61.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019643)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43310
fragaria_vesca FvH4_4g10741
malus_domestica MD04G1040200.v1.1 MD07G1010900.v1.1 MD07G1093600.v1.1 MD08G1180100.v1.1
prunus_persica Prupe.1G192700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
AatII GACGTC 1 cut(s) 237
AccB7I CCANNNNNTGG 1 cut(s) 338
AccBSI CCGCTC 1 cut(s) 307
AciI CCGC 6 cut(s) 25, 43, 70, 148, 289, 305
AcvI CACGTG 1 cut(s) 338
AcyI GRCGYC 2 cut(s) 177, 234
AdeI CACNNNGTG 1 cut(s) 338
AfiI CCNNNNNNNGG 3 cut(s) 28, 295, 338
AgeI ACCGGT 1 cut(s) 239
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 3 cut(s) 78, 208, 268
AluI AGCT 3 cut(s) 78, 208, 268
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 224
AoxI GGCC 2 cut(s) 96, 324
ApeKI GCWGC 2 cut(s) 72, 75
AsiGI ACCGGT 1 cut(s) 239
AsuHPI GGTGA 2 cut(s) 73, 229
BbrPI CACGTG 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 2 cut(s) 84, 87
BccI CCATC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 224
BisI GCNGC 5 cut(s) 43, 70, 73, 76, 305
BlsI GCNGC 5 cut(s) 44, 71, 74, 77, 306
Bme1390I CCNGG 1 cut(s) 29
BmgBI CACGTC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 1 cut(s) 300
BsaAI YACGTR 1 cut(s) 338
BsaHI GRCGYC 2 cut(s) 177, 234
BsaJI CCNNGG 2 cut(s) 93, 180
BsaWI WCCGGW 1 cut(s) 239
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 295, 338
Bse118I RCCGGY 1 cut(s) 239
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 93, 180
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 3 cut(s) 28, 295, 338
BseRI GAGGAG 3 cut(s) 70, 91, 94
BseXI GCAGC 2 cut(s) 84, 87
BshFI GGCC 2 cut(s) 98, 326
BshTI ACCGGT 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 240
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 3 cut(s) 28, 295, 338
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 2 cut(s) 98, 326
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 249
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 6 cut(s) 25, 43, 70, 148, 289, 305
BspANI GGCC 2 cut(s) 98, 326
BspQI GCTCTTC 2 cut(s) 258, 314
BsrBI CCGCTC 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 2 cut(s) 93, 180
BssMI GATC 1 cut(s) 249
BssNI GRCGYC 2 cut(s) 177, 234
BssT1I CCWWGG 2 cut(s) 93, 180
Bst2UI CCWGG 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 258, 314
BstACI GRCGYC 2 cut(s) 177, 234
BstBAI YACGTR 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 4 cut(s) 75, 156, 185, 274
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 84, 87
BsuRI GGCC 2 cut(s) 98, 326
BtgI CCRYGG 1 cut(s) 93
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 239
CseI GACGC 1 cut(s) 185
CspAI ACCGGT 1 cut(s) 239
CviAII CATG 4 cut(s) 17, 39, 94, 274
CviJI RGCY 7 cut(s) 69, 78, 98, 208, 268, 326, 342
CviKI_1 RGCY 7 cut(s) 69, 78, 98, 208, 268, 326, 342
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
DraIII CACNNNGTG 1 cut(s) 338
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
Eam1104I CTCTTC 2 cut(s) 258, 314
EarI CTCTTC 2 cut(s) 258, 314
EciI GGCGGA 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 93, 180
Eco147I AGGCCT 1 cut(s) 326
Eco72I CACGTG 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 93, 180
ErhI CCWWGG 2 cut(s) 93, 180
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 4 cut(s) 20, 42, 97, 277
FaiI YATR 5 cut(s) 18, 40, 89, 95, 275
FaqI GGGAC 1 cut(s) 188
FatI CATG 4 cut(s) 16, 38, 93, 273
Fnu4HI GCNGC 5 cut(s) 43, 70, 73, 76, 305
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 5 cut(s) 43, 70, 73, 76, 305
GluI GCNGC 5 cut(s) 43, 70, 73, 76, 305
HaeIII GGCC 2 cut(s) 98, 326
HapII CCGG 1 cut(s) 240
HgaI GACGC 1 cut(s) 185
Hin1I GRCGYC 2 cut(s) 177, 234
Hin1II CATG 4 cut(s) 20, 42, 97, 277
HinfI GANTC 1 cut(s) 314
HpaII CCGG 1 cut(s) 240
HphI GGTGA 2 cut(s) 73, 229
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 283
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 178
HpyCH4IV ACGT 3 cut(s) 195, 234, 337
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 156, 185, 274
HpySE526I ACGT 3 cut(s) 195, 234, 337
Hsp92I GRCGYC 2 cut(s) 177, 234
Hsp92II CATG 4 cut(s) 20, 42, 97, 277
Kzo9I GATC 1 cut(s) 249
LguI GCTCTTC 2 cut(s) 258, 314
LmnI GCTCC 2 cut(s) 83, 164
LpnPI CCDG 7 cut(s) 14, 41, 44, 157, 253, 280, 308
Lsp1109I GCAGC 2 cut(s) 84, 87
LweI GCATC 1 cut(s) 300
MaeII ACGT 3 cut(s) 195, 234, 337
MaeIII GTNAC 2 cut(s) 61, 235
MalI GATC 1 cut(s) 251
MbiI CCGCTC 1 cut(s) 307
MboI GATC 1 cut(s) 249
MboII GAAGA 2 cut(s) 275, 301
MhlI GDGCHC 1 cut(s) 36
MlyI GAGTC 1 cut(s) 308
MslI CAYNNNNRTG 2 cut(s) 92, 296
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 4 cut(s) 75, 156, 185, 274
NcoI CCATGG 1 cut(s) 93
NdeII GATC 1 cut(s) 249
NlaIII CATG 4 cut(s) 20, 42, 97, 277
NmuCI GTSAC 2 cut(s) 61, 235
PceI AGGCCT 1 cut(s) 326
PciSI GCTCTTC 2 cut(s) 258, 314
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 258
PflMI CCANNNNNTGG 1 cut(s) 338
PinAI ACCGGT 1 cut(s) 239
PkrI GCNGC 5 cut(s) 44, 71, 74, 77, 306
PleI GAGTC 1 cut(s) 308
PmaCI CACGTG 1 cut(s) 338
PmlI CACGTG 1 cut(s) 338
PpsI GAGTC 1 cut(s) 308
Ppu21I YACGTR 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 27
PspCI CACGTG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 27
RseI CAYNNNNRTG 2 cut(s) 92, 296
SapI GCTCTTC 2 cut(s) 258, 314
SatI GCNGC 5 cut(s) 43, 70, 73, 76, 305
Sau3AI GATC 1 cut(s) 249
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 1 cut(s) 36
SfaNI GCATC 1 cut(s) 300
SgrAI CRCCGGYG 1 cut(s) 239
SmiMI CAYNNNNRTG 2 cut(s) 92, 296
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 6 cut(s) 25, 43, 70, 148, 289, 305
StuI AGGCCT 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 2 cut(s) 93, 180
TaiI ACGT 3 cut(s) 198, 237, 340
TaqI TCGA 3 cut(s) 5, 252, 312
TauI GCSGC 3 cut(s) 45, 72, 307
TseFI GTSAC 2 cut(s) 61, 235
TseI GCWGC 2 cut(s) 72, 75
Tsp45I GTSAC 2 cut(s) 61, 235
TspGWI ACGGA 1 cut(s) 206
Van91I CCANNNNNTGG 1 cut(s) 338
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.