MD08G1180100.v1.1

Ribosomal L18p L5e family protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
22172613 .. 22172786
174 bp
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UTR
Exon/CDS
Intron
MD08G1180100.v1.1.491

Sequence Viewer

Length: 174 bp
ATGTCCGAAAACCACCATGTCCTCTGCTTGGTGCTCTCATGCCGCAAAATCACAGCACAGGTGACGAGCCTCAGCAGCTCCTCAATCATAACCATGGCCTCCTCCTCCGAGCAAGAGTTCGTCGCCCGTTATCGATCCAATCTCAACTGCTTCCCTCGCTCCCAAACCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.4

Weight (kDa)

8.66

Isoelectric Point (pI)

73.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019643)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43310
fragaria_vesca FvH4_4g10741
malus_domestica MD04G1040200.v1.1 MD07G1010900.v1.1 MD07G1093600.v1.1 MD08G1180100.v1.1
prunus_persica Prupe.1G192700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 43
AclWI GGATC 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 28
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
Alw21I GWGCWC 1 cut(s) 36
AlwI GGATC 1 cut(s) 129
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 36
BbvCI CCTCAGC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 87
BisI GCNGC 2 cut(s) 43, 76
BlsI GCNGC 2 cut(s) 44, 77
Bpu10I CCTNAGC 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 28
BseCI ATCGAT 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 85
BseRI GAGGAG 3 cut(s) 70, 91, 94
BseXI GCAGC 1 cut(s) 87
BshFI GGCC 1 cut(s) 98
BshVI ATCGAT 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 28
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 134
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 1 cut(s) 43
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 84
BspDI ATCGAT 1 cut(s) 133
BspPI GGATC 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 93
BstKTI GATC 1 cut(s) 137
BstMBI GATC 1 cut(s) 134
BstMWI GCNNNNNNNGC 2 cut(s) 75, 156
BstV1I GCAGC 1 cut(s) 87
Bsu15I ATCGAT 1 cut(s) 133
BsuRI GGCC 1 cut(s) 98
BsuTUI ATCGAT 1 cut(s) 133
BtgI CCRYGG 1 cut(s) 93
ClaI ATCGAT 1 cut(s) 133
CviAII CATG 3 cut(s) 17, 39, 94
CviJI RGCY 3 cut(s) 69, 78, 98
CviKI_1 RGCY 3 cut(s) 69, 78, 98
DdeI CTNAG 1 cut(s) 71
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 3 cut(s) 20, 42, 97
FaiI YATR 4 cut(s) 18, 40, 89, 95
FatI CATG 3 cut(s) 16, 38, 93
Fnu4HI GCNGC 2 cut(s) 43, 76
Fsp4HI GCNGC 2 cut(s) 43, 76
GluI GCNGC 2 cut(s) 43, 76
HaeIII GGCC 1 cut(s) 98
Hin1II CATG 3 cut(s) 20, 42, 97
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 7, 109
Hpy99I CGWCG 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 156
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 3 cut(s) 20, 42, 97
Kzo9I GATC 1 cut(s) 134
LmnI GCTCC 2 cut(s) 83, 164
LpnPI CCDG 1 cut(s) 44
Lsp1109I GCAGC 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 36
MnlI CCTC 7 cut(s) 32, 80, 91, 109, 112, 115, 165
MslI CAYNNNNRTG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 75, 156
NcoI CCATGG 1 cut(s) 93
NdeII GATC 1 cut(s) 134
NlaIII CATG 3 cut(s) 20, 42, 97
NmuCI GTSAC 1 cut(s) 61
PkrI GCNGC 2 cut(s) 44, 77
RseI CAYNNNNRTG 1 cut(s) 92
SatI GCNGC 2 cut(s) 43, 76
Sau3AI GATC 1 cut(s) 134
SduI GDGCHC 1 cut(s) 36
SetI ASST 3 cut(s) 63, 80, 170
SmiMI CAYNNNNRTG 1 cut(s) 92
SsiI CCGC 1 cut(s) 43
StyI CCWWGG 1 cut(s) 93
TaqI TCGA 1 cut(s) 133
TauI GCSGC 1 cut(s) 45
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 75
Tsp45I GTSAC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.