FvH4_4g10741

Ribosomal L18p L5e family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0019643
Physical Location & Seq
Reverse (-)
14453817 .. 14454188
372 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10741.t1

Sequence Viewer

Length: 372 bp
ATGTCGACTAACCACCACGTCCTCCGCCTAGTCCTGTCGTGCCGCAAAATCACAGCTCAGGTGACAAGCCCCAACACGTCATCAATCATAGCCATGGCTTCCTCCTCCGAGCAAGACTTGGCCTCCCGCTACCCAACCCACCTCAACCGCTTCCCTCGCTCCCAACTCTTCTGGGACGCCAAGCTCGCCTCCCACGTCGGCCACAAGCTCGCCCTTCGTCTCCTCGACCTCGCTGTCACCGCCGTCCATATTGATGTCGCCGAAGAGCTCTCCAGGCCTCCCCACCTCCGCTTCCGAGTCTGGCCCCTCTTCGTCTCCGTTAAACGCGCCGGCGTAGTCGTCCACGGCGCCGATAAGCTCGTCTTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.71

Weight (kDa)

10.55

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019643)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43310
fragaria_vesca FvH4_4g10741
malus_domestica MD04G1040200.v1.1 MD07G1010900.v1.1 MD07G1093600.v1.1 MD08G1180100.v1.1
prunus_persica Prupe.1G192700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 347
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 327
AciI CCGC 6 cut(s) 25, 43, 127, 148, 240, 289
AcoI YGGCCR 1 cut(s) 199
AcyI GRCGYC 2 cut(s) 177, 348
AflIII ACRYGT 1 cut(s) 75
AjiI CACGTC 3 cut(s) 19, 78, 196
AjnI CCWGG 1 cut(s) 272
AluBI AGCT 5 cut(s) 56, 184, 208, 268, 358
AluI AGCT 5 cut(s) 56, 184, 208, 268, 358
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 224, 319
AoxI GGCC 4 cut(s) 120, 199, 275, 302
AspLEI GCGC 2 cut(s) 329, 350
AspS9I GGNCC 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 73, 229
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 270
BceAI ACGGC 2 cut(s) 227, 361
BciT130I CCWGG 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 224, 319
BfaI CTAG 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 351
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 274
BmgBI CACGTC 3 cut(s) 19, 78, 196
BmgT120I GGNCC 1 cut(s) 303
BmiI GGNNCC 2 cut(s) 305, 349
BmrFI CCNGG 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 57
BsaHI GRCGYC 2 cut(s) 177, 348
BsaJI CCNNGG 2 cut(s) 93, 343
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bse118I RCCGGY 1 cut(s) 329
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 2 cut(s) 93, 343
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 2 cut(s) 94, 212
Bsh1236I CGCG 1 cut(s) 327
BshFI GGCC 4 cut(s) 122, 201, 277, 304
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 1 cut(s) 330
BslFI GGGAC 1 cut(s) 188
BsmAI GTCTC 2 cut(s) 224, 319
BsmBI CGTCTC 2 cut(s) 224, 319
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 4 cut(s) 122, 201, 277, 304
Bsp1286I GDGCHC 1 cut(s) 270
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 6 cut(s) 25, 43, 127, 148, 240, 289
BspANI GGCC 4 cut(s) 122, 201, 277, 304
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 327
BspLI GGNNCC 2 cut(s) 305, 349
BspQI GCTCTTC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 93, 343
BssNI GRCGYC 2 cut(s) 177, 348
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 274
Bst6I CTCTTC 3 cut(s) 173, 258, 314
BstACI GRCGYC 2 cut(s) 177, 348
BstC8I GCNNGC 3 cut(s) 186, 210, 331
BstDEI CTNAG 1 cut(s) 57
BstDSI CCRYGG 2 cut(s) 93, 343
BstFNI CGCG 1 cut(s) 327
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 2 cut(s) 329, 350
BstMAI GTCTC 2 cut(s) 224, 319
BstMWI GCNNNNNNNGC 4 cut(s) 156, 185, 239, 274
BstNI CCWGG 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 272
BstUI CGCG 1 cut(s) 327
BsuRI GGCC 4 cut(s) 122, 201, 277, 304
BtgI CCRYGG 2 cut(s) 93, 343
BtrI CACGTC 3 cut(s) 19, 78, 196
Cac8I GCNNGC 3 cut(s) 186, 210, 331
CfoI GCGC 2 cut(s) 329, 350
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 303
CseI GACGC 1 cut(s) 185
CviAII CATG 1 cut(s) 94
DdeI CTNAG 1 cut(s) 57
DinI GGCGCC 1 cut(s) 349
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 3 cut(s) 173, 258, 314
EarI CTCTTC 3 cut(s) 173, 258, 314
EciI GGCGGA 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 270
Eco53kI GAGCTC 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 270
EgeI GGCGCC 1 cut(s) 349
EheI GGCGCC 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 2 cut(s) 224, 319
FaeI CATG 1 cut(s) 97
FaiI YATR 3 cut(s) 89, 95, 249
FalI AAGNNNNNCTT 1 cut(s) 347
FaqI GGGAC 1 cut(s) 188
FatI CATG 1 cut(s) 93
FauI CCCGC 1 cut(s) 134
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 1 cut(s) 29
GlaI GCGC 2 cut(s) 328, 349
GluI GCNGC 1 cut(s) 43
GsuI CTGGAG 1 cut(s) 256
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 4 cut(s) 122, 201, 277, 304
HapII CCGG 1 cut(s) 330
HgaI GACGC 1 cut(s) 185
HhaI GCGC 2 cut(s) 329, 350
Hin1I GRCGYC 2 cut(s) 177, 348
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 2 cut(s) 327, 348
HinP1I GCGC 2 cut(s) 327, 348
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 297
HpaII CCGG 1 cut(s) 330
HphI GGTGA 2 cut(s) 73, 229
Hpy166II GTNNAC 2 cut(s) 6, 343
Hpy188I TCNGA 2 cut(s) 109, 296
Hpy8I GTNNAC 2 cut(s) 6, 343
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 224
HpyCH4IV ACGT 3 cut(s) 18, 77, 195
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 185, 239, 274
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 3 cut(s) 18, 77, 195
Hsp92I GRCGYC 2 cut(s) 177, 348
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 2 cut(s) 327, 348
KasI GGCGCC 1 cut(s) 347
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
LguI GCTCTTC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 7 cut(s) 44, 47, 157, 259, 286, 286, 343
MaeI CTAG 1 cut(s) 29
MaeII ACGT 3 cut(s) 18, 77, 195
MaeIII GTNAC 2 cut(s) 61, 235
MboII GAAGA 3 cut(s) 160, 275, 301
MhlI GDGCHC 1 cut(s) 270
Mly113I GGCGCC 1 cut(s) 348
MlyI GAGTC 1 cut(s) 306
MreI CGCCGGCG 1 cut(s) 329
MroNI GCCGGC 1 cut(s) 329
MseI TTAA 2 cut(s) 321, 370
MslI CAYNNNNRTG 2 cut(s) 92, 252
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 274
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 4 cut(s) 156, 185, 239, 274
NaeI GCCGGC 1 cut(s) 331
NarI GGCGCC 1 cut(s) 348
NcoI CCATGG 1 cut(s) 93
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 2 cut(s) 305, 349
NmuCI GTSAC 2 cut(s) 61, 235
PceI AGGCCT 1 cut(s) 277
PciSI GCTCTTC 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PdiI GCCGGC 1 cut(s) 331
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 1 cut(s) 305
PluTI GGCGCC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 305
Psp124BI GAGCTC 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 305, 349
PspPI GGNCC 1 cut(s) 303
RseI CAYNNNNRTG 2 cut(s) 92, 252
SacI GAGCTC 1 cut(s) 270
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 2 cut(s) 321, 370
SatI GCNGC 1 cut(s) 43
Sau96I GGNCC 1 cut(s) 303
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 1 cut(s) 270
SfoI GGCGCC 1 cut(s) 349
SgrAI CRCCGGYG 1 cut(s) 329
SmiMI CAYNNNNRTG 2 cut(s) 92, 252
SseBI AGGCCT 1 cut(s) 277
SsiI CCGC 6 cut(s) 25, 43, 127, 148, 240, 289
SspDI GGCGCC 1 cut(s) 347
SspMI CTAG 1 cut(s) 29
SstI GAGCTC 1 cut(s) 270
StuI AGGCCT 1 cut(s) 277
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 93
TaiI ACGT 3 cut(s) 21, 80, 198
TaqI TCGA 2 cut(s) 5, 225
TauI GCSGC 1 cut(s) 45
Tru1I TTAA 2 cut(s) 321, 370
Tru9I TTAA 2 cut(s) 321, 370
TseFI GTSAC 2 cut(s) 61, 235
Tsp45I GTSAC 2 cut(s) 61, 235
TspGWI ACGGA 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.