MD07G1093600.v1.1

Ribosomal L18p L5e family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0019643
Physical Location & Seq
Reverse (-)
10049221 .. 10049565
345 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1093600.v1.1.491

Sequence Viewer

Length: 345 bp
ATGTCCGGAAACCACCATGTCCTCCGCCTAGTGCTCTCATGCCGCAAAATCACAGCACAGGTGACAAGCCCCAGCAGCTCCTCAATCATAGCCATGGCCTCTTCCTCCGAGCAAGAGTTCGTTGCCTGCTACCGATCCAATCTCAACCGCTTCCCTCGCTCTCCAACCTTCTGGGATGCCAAGGTCACCTCTCGCATCGGCGAGAAGCTTGCCCTTCGTTTCCAGGATATCGGCGTCACTGGTGTCGAGATTGACCTCCGTGAAGAGCTATCTAGGCCCGTCCACCACCGCATCGAGGTGTTGTCGCTCTTCTACTTTGTCCAGGCCCGTCCACCACATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.87

Weight (kDa)

9.58

Isoelectric Point (pI)

72.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019643)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43310
fragaria_vesca FvH4_4g10741
malus_domestica MD04G1040200.v1.1 MD07G1010900.v1.1 MD07G1093600.v1.1 MD08G1180100.v1.1
prunus_persica Prupe.1G192700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 338
AccIII TCCGGA 1 cut(s) 5
AciI CCGC 4 cut(s) 25, 43, 148, 289
AclWI GGATC 1 cut(s) 129
AcyI GRCGYC 1 cut(s) 234
AfiI CCNNNNNNNGG 2 cut(s) 295, 338
AjnI CCWGG 2 cut(s) 222, 321
AluBI AGCT 3 cut(s) 78, 208, 268
AluI AGCT 3 cut(s) 78, 208, 268
Alw21I GWGCWC 1 cut(s) 36
AlwI GGATC 1 cut(s) 129
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 3 cut(s) 96, 275, 324
ApeKI GCWGC 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 276, 325
AsuHPI GGTGA 2 cut(s) 73, 178
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 87
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 2 cut(s) 224, 323
BfaI CTAG 2 cut(s) 29, 273
BisI GCNGC 2 cut(s) 43, 76
BlsI GCNGC 2 cut(s) 44, 77
Bme1390I CCNGG 2 cut(s) 224, 323
BmgT120I GGNCC 2 cut(s) 276, 325
BmrFI CCNGG 2 cut(s) 224, 323
BmsI GCATC 3 cut(s) 166, 204, 300
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 93, 180
BsaWI WCCGGW 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 338
Bse1I ACTGG 1 cut(s) 244
BseAI TCCGGA 1 cut(s) 5
BseBI CCWGG 2 cut(s) 224, 323
BseDI CCNNGG 2 cut(s) 93, 180
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 2 cut(s) 295, 338
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 70
BseXI GCAGC 1 cut(s) 87
BseYI CCCAGC 1 cut(s) 71
BshFI GGCC 3 cut(s) 98, 277, 326
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 295, 338
BsnI GGCC 3 cut(s) 98, 277, 326
Bsp1286I GDGCHC 1 cut(s) 36
Bsp13I TCCGGA 1 cut(s) 5
Bsp143I GATC 1 cut(s) 134
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 4 cut(s) 25, 43, 148, 289
BspANI GGCC 3 cut(s) 98, 277, 326
BspEI TCCGGA 1 cut(s) 5
BspPI GGATC 1 cut(s) 129
BspQI GCTCTTC 2 cut(s) 258, 314
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 2 cut(s) 93, 180
BssMI GATC 1 cut(s) 134
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 2 cut(s) 93, 180
Bst2UI CCWGG 2 cut(s) 224, 323
Bst6I CTCTTC 3 cut(s) 106, 258, 314
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 127, 210
BstDSI CCRYGG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 184
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 1 cut(s) 137
BstMBI GATC 1 cut(s) 134
BstMWI GCNNNNNNNGC 3 cut(s) 75, 156, 274
BstNI CCWGG 2 cut(s) 224, 323
BstPI GGTNACC 1 cut(s) 184
BstSCI CCNGG 2 cut(s) 222, 321
BstV1I GCAGC 1 cut(s) 87
BstXI CCANNNNNNTGG 1 cut(s) 171
BsuRI GGCC 3 cut(s) 98, 277, 326
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 127, 210
Cfr13I GGNCC 2 cut(s) 276, 325
CseI GACGC 1 cut(s) 223
CviAII CATG 4 cut(s) 17, 39, 94, 338
CviJI RGCY 9 cut(s) 69, 78, 92, 98, 208, 268, 277, 326, 342
CviKI_1 RGCY 9 cut(s) 69, 78, 92, 98, 208, 268, 277, 326, 342
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
Eam1104I CTCTTC 3 cut(s) 106, 258, 314
EarI CTCTTC 3 cut(s) 106, 258, 314
EciI GGCGGA 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 93, 180
Eco32I GATATC 1 cut(s) 229
Eco91I GGTNACC 1 cut(s) 184
EcoO65I GGTNACC 1 cut(s) 184
EcoRII CCWGG 2 cut(s) 222, 321
EcoRV GATATC 1 cut(s) 229
EcoT14I CCWWGG 2 cut(s) 93, 180
ErhI CCWWGG 2 cut(s) 93, 180
FaeI CATG 4 cut(s) 20, 42, 97, 341
FaiI YATR 5 cut(s) 18, 40, 89, 95, 339
FatI CATG 4 cut(s) 16, 38, 93, 337
Fnu4HI GCNGC 2 cut(s) 43, 76
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 43, 76
FspBI CTAG 2 cut(s) 29, 273
GluI GCNGC 2 cut(s) 43, 76
GsaI CCCAGC 1 cut(s) 75
HaeIII GGCC 3 cut(s) 98, 277, 326
HapII CCGG 1 cut(s) 6
HgaI GACGC 1 cut(s) 223
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 4 cut(s) 20, 42, 97, 341
HindIII AAGCTT 1 cut(s) 206
HpaII CCGG 1 cut(s) 6
HphI GGTGA 2 cut(s) 73, 178
Hpy166II GTNNAC 2 cut(s) 283, 332
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 6, 247
Hpy8I GTNNAC 2 cut(s) 283, 332
HpyAV CCTTC 2 cut(s) 178, 224
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 156, 274
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 4 cut(s) 20, 42, 97, 341
Kpn2I TCCGGA 1 cut(s) 5
Kzo9I GATC 1 cut(s) 134
LguI GCTCTTC 2 cut(s) 258, 314
LmnI GCTCC 1 cut(s) 83
Lsp1109I GCAGC 1 cut(s) 87
LweI GCATC 3 cut(s) 166, 204, 300
MaeI CTAG 2 cut(s) 29, 273
MaeIII GTNAC 3 cut(s) 61, 184, 235
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MboII GAAGA 3 cut(s) 93, 275, 301
MhlI GDGCHC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 8 cut(s) 32, 91, 109, 115, 165, 199, 266, 289
MroI TCCGGA 1 cut(s) 5
MslI CAYNNNNRTG 2 cut(s) 92, 296
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 2 cut(s) 224, 323
MvaI CCWGG 2 cut(s) 224, 323
MwoI GCNNNNNNNGC 3 cut(s) 75, 156, 274
NcoI CCATGG 1 cut(s) 93
NdeII GATC 1 cut(s) 134
NlaIII CATG 4 cut(s) 20, 42, 97, 341
NmuCI GTSAC 3 cut(s) 61, 184, 235
PciSI GCTCTTC 2 cut(s) 258, 314
PflMI CCANNNNNTGG 1 cut(s) 338
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 2 cut(s) 44, 77
Psp6I CCWGG 2 cut(s) 222, 321
PspEI GGTNACC 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 71
PspGI CCWGG 2 cut(s) 222, 321
PspPI GGNCC 2 cut(s) 276, 325
RseI CAYNNNNRTG 2 cut(s) 92, 296
SapI GCTCTTC 2 cut(s) 258, 314
SatI GCNGC 2 cut(s) 43, 76
Sau3AI GATC 1 cut(s) 134
Sau96I GGNCC 2 cut(s) 276, 325
ScrFI CCNGG 2 cut(s) 224, 323
SduI GDGCHC 1 cut(s) 36
SetI ASST 9 cut(s) 63, 80, 170, 186, 191, 210, 258, 270, 300
SfaNI GCATC 3 cut(s) 166, 204, 300
SmiMI CAYNNNNRTG 2 cut(s) 92, 296
SsiI CCGC 4 cut(s) 25, 43, 148, 289
SspMI CTAG 2 cut(s) 29, 273
StyD4I CCNGG 2 cut(s) 222, 321
StyI CCWWGG 2 cut(s) 93, 180
TaqI TCGA 2 cut(s) 246, 294
TauI GCSGC 1 cut(s) 45
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 3 cut(s) 61, 184, 235
TseI GCWGC 1 cut(s) 75
Tsp45I GTSAC 3 cut(s) 61, 184, 235
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 244
Van91I CCANNNNNTGG 1 cut(s) 338
XspI CTAG 2 cut(s) 29, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.