AT2G43640

signal recognition particle 14 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012105
Physical Location & Seq
Reverse (-)
18097400 .. 18099136
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43640.3

Sequence Viewer

Length: 366 bp
ATGGTTCTATTACAGTTGGATCCATTCCTCAATGAACTCACGAGCATGTTTGAGAAAAGCAAAGAGAAGGGTTCTGTGTGGGTTACTTTGAAAAGATCATCTCTCAAGTCTAAGGTGCAGAAGAGGAAACTGAGCTCAGTTGGAGAATCCATTGAATACAGATGCCTTATTCGAGCAACCGATGGAAAGAAAACTGTTTCTACTTCGGTTGGTGCTAAGGATCACCAGAGATTTCAAGCATCATATGCCACCATTCTTAAGGCCCACATGACTGCTTTGAAGAAGAGGGAAAGGAAAGACCGGAAGAAATCGACAGAGGCAGAGAAGAAAGAAAGCACTTCAACCACTAAATCTAAGAAACTTTGA

Protein Analysis

121

Amino Acids

13.78

Weight (kDa)

10.22

Isoelectric Point (pI)

29.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP14 PF02290 5 - 84 2.5e-17 Signal recognition particle 14kD protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012105)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43640 AT2G43640 AT2G43640
fragaria_vesca FvH4_5g22590
malus_domestica MD08G1231600.v1.1 MD15G1424200.v1.1
prunus_persica Prupe.1G570200_v2.0.a1
pyrus_communis pycom08g20140 pycom15g37620
rosa_chinensis RchiOBHm_Chr7g0210361
rosa_laevigata RLG00000003043
rosa_multiflora Rmu_sc0003807.1_g000004
rosa_roxburghii Rroxscaffold_3G00248350
rosa_rugosa Rorug07G0121400
rosa_samantha Rh7AG254100 Rh7BG249000 Rh7CG270900 Rh7DG261600
rosa_wichuraiana Rw7G021660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 14, 27, 228
AflII CTTAAG 1 cut(s) 257
AgsI TTSAA 5 cut(s) 91, 155, 236, 280, 342
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
Alw21I GWGCWC 1 cut(s) 137
AlwI GGATC 3 cut(s) 14, 27, 228
AoxI GGCC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 215
BamHI GGATCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 137
BauI CACGAG 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 137
BccI CCATC 1 cut(s) 176
BfrI CTTAAG 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 21
BmsI GCATC 2 cut(s) 152, 248
Bpu10I CCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 300
BseMII CTCAG 2 cut(s) 122, 150
BsgI GTGCAG 1 cut(s) 137
BshFI GGCC 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 301
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 3 cut(s) 19, 95, 220
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 2 cut(s) 123, 149
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 3 cut(s) 14, 27, 228
BspTI CTTAAG 1 cut(s) 257
BssMI GATC 3 cut(s) 19, 95, 220
BssSI CACGAG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 40
Bst4CI ACNGT 2 cut(s) 15, 196
Bst6I CTCTTC 2 cut(s) 116, 278
BstAFI CTTAAG 1 cut(s) 257
BstAPI GCANNNNNTGC 1 cut(s) 245
BstDEI CTNAG 5 cut(s) 111, 131, 136, 216, 354
BstKTI GATC 3 cut(s) 22, 98, 223
BstMBI GATC 3 cut(s) 19, 95, 220
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 262
CviAII CATG 2 cut(s) 46, 268
CviJI RGCY 2 cut(s) 135, 263
CviKI_1 RGCY 2 cut(s) 135, 263
DdeI CTNAG 5 cut(s) 111, 131, 136, 216, 354
DpnI GATC 3 cut(s) 21, 97, 222
DpnII GATC 3 cut(s) 19, 95, 220
Eam1104I CTCTTC 2 cut(s) 116, 278
EarI CTCTTC 2 cut(s) 116, 278
Ecl136II GAGCTC 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 137
Eco53kI GAGCTC 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 137
FaeI CATG 2 cut(s) 49, 271
FaiI YATR 4 cut(s) 47, 244, 246, 269
FatI CATG 2 cut(s) 45, 267
FauNDI CATATG 1 cut(s) 244
FriOI GRGCYC 1 cut(s) 137
HaeIII GGCC 1 cut(s) 263
HapII CCGG 1 cut(s) 301
Hin1II CATG 2 cut(s) 49, 271
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 301
HphI GGTGA 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 2 cut(s) 15, 196
HpyCH4V TGCA 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 5 cut(s) 111, 131, 136, 216, 354
Hsp92II CATG 2 cut(s) 49, 271
Kzo9I GATC 3 cut(s) 19, 95, 220
LpnPI CCDG 2 cut(s) 239, 314
LweI GCATC 2 cut(s) 152, 248
MaeIII GTNAC 1 cut(s) 82
MalI GATC 3 cut(s) 21, 97, 222
MboI GATC 3 cut(s) 19, 95, 220
MboII GAAGA 5 cut(s) 133, 292, 295, 316, 337
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 4 cut(s) 38, 117, 279, 310
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 44
MspCI CTTAAG 1 cut(s) 257
MspI CCGG 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeI CATATG 1 cut(s) 244
NdeII GATC 3 cut(s) 19, 95, 220
NlaIII CATG 2 cut(s) 49, 271
NlaIV GGNNCC 1 cut(s) 21
NspI RCATGY 1 cut(s) 49
PfeI GAWTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 262
PsuI RGATCY 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 44
SacI GAGCTC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 258
Sau3AI GATC 3 cut(s) 19, 95, 220
Sau96I GGNCC 1 cut(s) 262
SduI GDGCHC 1 cut(s) 137
SetI ASST 2 cut(s) 117, 137
SfaNI GCATC 2 cut(s) 152, 248
SgeI CNNG 9 cut(s) 52, 54, 58, 118, 185, 238, 248, 280, 313
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 104, 257
SmoI CTYRAG 2 cut(s) 104, 257
SstI GAGCTC 1 cut(s) 137
TaaI ACNGT 2 cut(s) 15, 196
TaqI TCGA 2 cut(s) 172, 311
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TspDTI ATGAA 1 cut(s) 48
Vha464I CTTAAG 1 cut(s) 257
XceI RCATGY 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.