RchiOBHm_Chr7g0210361

Signal recognition particle 14 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012105
Physical Location & Seq
Forward (+)
28024321 .. 28026514
2194 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18823

Sequence Viewer

Length: 372 bp
ATGGTTCTTCTACAGCCAGATCCGTTCCTTAGTGAACTTACCAGCATGTTTGAGAAAAGCACTGAGAAAGGGTCTGTTTGGGTTACCTTCAAAAGATCATCTTTGAAGTCCAAGGTACAGAGGAATAAAATGAAAACTGCTGGTCAAGCAATTGACTACCGATGCCTTATCCGTGCAACATATGGGAACAAGACAATATCTACTTCGGTTGGAGCAAAGGAACATCAGCGATTTCAAGCTTCTTATGCAACTGTCCTTAAGGCTCACATGACTGCTCTAAAGAAGCGGGAGAGGAAGGATAAGAAAAAGGCTGCGGAGAAGAAAAAAGGGGGTGCAAAGAAGGCCAAGACAGATCCCATGGTCATAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP14

Protein Analysis

123

Amino Acids

13.82

Weight (kDa)

10.32

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP14 PF02290 4 - 93 6.4e-26 Signal recognition particle 14kD protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012105)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43640 AT2G43640 AT2G43640
fragaria_vesca FvH4_5g22590
malus_domestica MD08G1231600.v1.1 MD15G1424200.v1.1
prunus_persica Prupe.1G570200_v2.0.a1
pyrus_communis pycom08g20140 pycom15g37620
rosa_chinensis RchiOBHm_Chr7g0210361
rosa_laevigata RLG00000003043
rosa_multiflora Rmu_sc0003807.1_g000004
rosa_roxburghii Rroxscaffold_3G00248350
rosa_rugosa Rorug07G0121400
rosa_samantha Rh7AG254100 Rh7BG249000 Rh7CG270900 Rh7DG261600
rosa_wichuraiana Rw7G021660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 286, 314
AclWI GGATC 2 cut(s) 14, 347
AfaI GTAC 1 cut(s) 117
AflII CTTAAG 1 cut(s) 257
AgsI TTSAA 3 cut(s) 91, 106, 236
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
AlwI GGATC 2 cut(s) 14, 347
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 298
BfmI CTRYAG 1 cut(s) 11
BfrI CTTAAG 1 cut(s) 257
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
BmsI GCATC 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 111, 357
BseDI CCNNGG 2 cut(s) 111, 357
BseMII CTCAG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 298
BshFI GGCC 1 cut(s) 344
BsnI GGCC 1 cut(s) 344
Bsp143I GATC 3 cut(s) 19, 95, 352
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 2 cut(s) 286, 314
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 1 cut(s) 55
BspPI GGATC 2 cut(s) 14, 347
BspTI CTTAAG 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 111, 357
BssMI GATC 3 cut(s) 19, 95, 352
BssT1I CCWWGG 2 cut(s) 111, 357
Bst4CI ACNGT 1 cut(s) 253
BstAFI CTTAAG 1 cut(s) 257
BstDEI CTNAG 2 cut(s) 29, 63
BstDSI CCRYGG 1 cut(s) 357
BstEII GGTNACC 1 cut(s) 82
BstKTI GATC 3 cut(s) 22, 98, 355
BstMBI GATC 3 cut(s) 19, 95, 352
BstMWI GCNNNNNNNGC 3 cut(s) 146, 245, 341
BstNSI RCATGY 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 298
BstX2I RGATCY 2 cut(s) 19, 352
BstYI RGATCY 2 cut(s) 19, 352
BsuRI GGCC 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 60
Csp6I GTAC 1 cut(s) 116
CviAII CATG 3 cut(s) 46, 268, 358
CviJI RGCY 6 cut(s) 16, 239, 263, 311, 344, 368
CviKI_1 RGCY 6 cut(s) 16, 239, 263, 311, 344, 368
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 2 cut(s) 29, 63
DpnI GATC 3 cut(s) 21, 97, 354
DpnII GATC 3 cut(s) 19, 95, 352
Eco130I CCWWGG 2 cut(s) 111, 357
Eco91I GGTNACC 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 82
EcoT14I CCWWGG 2 cut(s) 111, 357
ErhI CCWWGG 2 cut(s) 111, 357
FaeI CATG 3 cut(s) 49, 271, 361
FaiI YATR 7 cut(s) 47, 181, 183, 246, 269, 359, 365
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FatI CATG 3 cut(s) 45, 267, 357
FauI CCCGC 1 cut(s) 279
FauNDI CATATG 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 312
GluI GCNGC 1 cut(s) 312
HaeIII GGCC 1 cut(s) 344
Hin1II CATG 3 cut(s) 49, 271, 361
HindIII AAGCTT 1 cut(s) 237
Hpy166II GTNNAC 1 cut(s) 35
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 97, 289, 334
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 3 cut(s) 176, 248, 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 245, 341
HpyF3I CTNAG 2 cut(s) 29, 63
Hsp92II CATG 3 cut(s) 49, 271, 361
Kzo9I GATC 3 cut(s) 19, 95, 352
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 3 cut(s) 30, 55, 126
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 82
MalI GATC 3 cut(s) 21, 97, 354
MboI GATC 3 cut(s) 19, 95, 352
MboII GAAGA 1 cut(s) 331
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 2 cut(s) 19, 352
MluCI AATT 1 cut(s) 150
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 2 cut(s) 114, 285
MseI TTAA 1 cut(s) 258
MspCI CTTAAG 1 cut(s) 257
MunI CAATTG 1 cut(s) 150
MwoI GCNNNNNNNGC 3 cut(s) 146, 245, 341
NcoI CCATGG 1 cut(s) 357
NdeI CATATG 1 cut(s) 181
NdeII GATC 3 cut(s) 19, 95, 352
NlaIII CATG 3 cut(s) 49, 271, 361
NspI RCATGY 1 cut(s) 49
PkrI GCNGC 1 cut(s) 313
PspEI GGTNACC 1 cut(s) 82
PsuI RGATCY 2 cut(s) 19, 352
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 3 cut(s) 19, 95, 352
SetI ASST 3 cut(s) 89, 117, 241
SfaNI GCATC 1 cut(s) 152
SfcI CTRYAG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 1 cut(s) 150
SsiI CCGC 2 cut(s) 286, 314
StyI CCWWGG 2 cut(s) 111, 357
TaaI ACNGT 1 cut(s) 253
TasI AATT 1 cut(s) 150
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 1 cut(s) 67
TseI GCWGC 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 146
TspGWI ACGGA 2 cut(s) 12, 161
TspRI CASTG 1 cut(s) 67
Vha464I CTTAAG 1 cut(s) 257
XceI RCATGY 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.