Rh7CG270900

Signal recognition particle 14 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012105
Physical Location & Seq
Forward (+)
26772832 .. 26775081
2250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG270900.1

Sequence Viewer

Length: 327 bp
ATGTTTGAGAAAAGCACTGAGAAAGGGTCCGTTTGGGTTACCTTCAAAAGATCATCTTTGAAGTCCAAGGTACAGAGGAATAAAATGAAAACTGCTGGTCAAGCAATTGACTACAGATGCCTTATCCGTGCAACATATGGGAACAAGACAATATCTACTTCGGTTGGAGCAAAGGAACATCAGCGATTTCAAGCTTCTTATGCAACTGTCCTTAAGGCTCACATGACTGCTCTAAAGAAGCGGGAGAGGAAGGATAAGAAAAAGGCTGCGGAGAAGAAAAAAGGGGGTGCAAAGAAGGTCAAGACAGATCCCATGGTCATAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP14

Protein Analysis

108

Amino Acids

12.18

Weight (kDa)

10.48

Isoelectric Point (pI)

20.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP14 PF02290 1 - 78 2.4e-20 Signal recognition particle 14kD protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012105)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43640 AT2G43640 AT2G43640
fragaria_vesca FvH4_5g22590
malus_domestica MD08G1231600.v1.1 MD15G1424200.v1.1
prunus_persica Prupe.1G570200_v2.0.a1
pyrus_communis pycom08g20140 pycom15g37620
rosa_chinensis RchiOBHm_Chr7g0210361
rosa_laevigata RLG00000003043
rosa_multiflora Rmu_sc0003807.1_g000004
rosa_roxburghii Rroxscaffold_3G00248350
rosa_rugosa Rorug07G0121400
rosa_samantha Rh7AG254100 Rh7BG249000 Rh7CG270900 Rh7DG261600
rosa_wichuraiana Rw7G021660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 241, 269
AclWI GGATC 1 cut(s) 302
AfaI GTAC 1 cut(s) 72
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 3 cut(s) 46, 61, 191
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
AlwI GGATC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 27
AvaII GGWCC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 253
BfmI CTRYAG 1 cut(s) 112
BfrI CTTAAG 1 cut(s) 212
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 28
BmsI GCATC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 66, 312
BseDI CCNNGG 2 cut(s) 66, 312
BseMII CTCAG 1 cut(s) 9
BseXI GCAGC 1 cut(s) 253
Bsp143I GATC 2 cut(s) 50, 307
Bsp19I CCATGG 1 cut(s) 312
BspACI CCGC 2 cut(s) 241, 269
BspCNI CTCAG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 28
BspPI GGATC 1 cut(s) 302
BspTI CTTAAG 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 66, 312
BssMI GATC 2 cut(s) 50, 307
BssT1I CCWWGG 2 cut(s) 66, 312
Bst4CI ACNGT 1 cut(s) 208
BstAFI CTTAAG 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 312
BstEII GGTNACC 1 cut(s) 37
BstKTI GATC 2 cut(s) 53, 310
BstMBI GATC 2 cut(s) 50, 307
BstMWI GCNNNNNNNGC 2 cut(s) 101, 200
BstPI GGTNACC 1 cut(s) 37
BstSFI CTRYAG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BtgI CCRYGG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 71
CviAII CATG 2 cut(s) 223, 313
CviJI RGCY 4 cut(s) 194, 218, 266, 323
CviKI_1 RGCY 4 cut(s) 194, 218, 266, 323
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 1 cut(s) 18
DpnI GATC 2 cut(s) 52, 309
DpnII GATC 2 cut(s) 50, 307
Eco130I CCWWGG 2 cut(s) 66, 312
Eco47I GGWCC 1 cut(s) 27
Eco91I GGTNACC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 37
EcoT14I CCWWGG 2 cut(s) 66, 312
ErhI CCWWGG 2 cut(s) 66, 312
FaeI CATG 2 cut(s) 226, 316
FaiI YATR 6 cut(s) 136, 138, 201, 224, 314, 320
FalI AAGNNNNNCTT 2 cut(s) 40, 72
FatI CATG 2 cut(s) 222, 312
FauI CCCGC 1 cut(s) 234
FauNDI CATATG 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
Hin1II CATG 2 cut(s) 226, 316
HindIII AAGCTT 1 cut(s) 192
Hpy188III TCNNGA 1 cut(s) 301
HpyAV CCTTC 3 cut(s) 52, 244, 289
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 3 cut(s) 131, 203, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 200
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 2 cut(s) 226, 316
Kzo9I GATC 2 cut(s) 50, 307
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 1 cut(s) 81
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 52, 309
MboI GATC 2 cut(s) 50, 307
MboII GAAGA 1 cut(s) 286
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 1 cut(s) 307
MluCI AATT 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 2 cut(s) 69, 240
MseI TTAA 1 cut(s) 213
MspCI CTTAAG 1 cut(s) 212
MunI CAATTG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 101, 200
NcoI CCATGG 1 cut(s) 312
NdeI CATATG 1 cut(s) 136
NdeII GATC 2 cut(s) 50, 307
NlaIII CATG 2 cut(s) 226, 316
NlaIV GGNNCC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 268
PspEI GGTNACC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 27
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 2 cut(s) 50, 307
Sau96I GGNCC 1 cut(s) 27
SetI ASST 4 cut(s) 44, 72, 196, 300
SfaNI GCATC 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 112
SgeI CNNG 9 cut(s) 79, 108, 113, 140, 157, 203, 235, 254, 313
SinI GGWCC 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 1 cut(s) 105
SsiI CCGC 2 cut(s) 241, 269
StyI CCWWGG 2 cut(s) 66, 312
TaaI ACNGT 1 cut(s) 208
TasI AATT 1 cut(s) 105
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 22
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 101
TspGWI ACGGA 2 cut(s) 19, 116
TspRI CASTG 1 cut(s) 22
Vha464I CTTAAG 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.