pycom15g37620

Signal recognition particle 14 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012105
Physical Location & Seq
Reverse (-)
37538350 .. 37540003
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g37620.1

Sequence Viewer

Length: 360 bp
ATGGTTCTTTTACAGCCGGATCCGTTTCTTAACGAACTTACTAGCATGTTCGAGAAAAGCACCGAGAAAGGTTCCGTTTGGGTTACCTTTAAACGATCATCCATGAAGTCTAAGGTGCAGAGGAATAAAATGAAAACTGCCGGTGAAGAAATTGATTACCGATGCCTTATTCGTGCAACACTTGGGAATAAGACAATTTCTACTTCGGTTGGCCCGAAGGAACACCAGCGCTTCCAATCATCATATGCAACTGTCCTAAAGGCTCACATGACAGCTTTAAAGAAGCGGGAGAGGAAGGAAAAGAAGAAGGCTGCAGAATCAGATAAGAAAGGAGGTGTAAAGAAACCCAAGAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP14

Protein Analysis

120

Amino Acids

13.59

Weight (kDa)

10.27

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP14 PF02290 4 - 93 4.6e-26 Signal recognition particle 14kD protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012105)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43640 AT2G43640 AT2G43640
fragaria_vesca FvH4_5g22590
malus_domestica MD08G1231600.v1.1 MD15G1424200.v1.1
prunus_persica Prupe.1G570200_v2.0.a1
pyrus_communis pycom08g20140 pycom15g37620
rosa_chinensis RchiOBHm_Chr7g0210361
rosa_laevigata RLG00000003043
rosa_multiflora Rmu_sc0003807.1_g000004
rosa_roxburghii Rroxscaffold_3G00248350
rosa_rugosa Rorug07G0121400
rosa_samantha Rh7AG254100 Rh7BG249000 Rh7CG270900 Rh7DG261600
rosa_wichuraiana Rw7G021660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 286
AclWI GGATC 2 cut(s) 14, 27
AfeI AGCGCT 1 cut(s) 230
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
AlwI GGATC 2 cut(s) 14, 27
Aor51HI AGCGCT 1 cut(s) 230
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 311
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 155
BamHI GGATCC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 298
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 312
BfoI RGCGCY 1 cut(s) 232
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 21, 73
BmsI GCATC 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 140
BseGI GGATG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 298
BsgI GTGCAG 1 cut(s) 137
BshFI GGCC 1 cut(s) 213
BsiSI CCGG 2 cut(s) 17, 141
BsnI GGCC 1 cut(s) 213
Bsp143I GATC 2 cut(s) 19, 95
BspACI CCGC 1 cut(s) 286
BspANI GGCC 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 21, 73
BspMAI CTGCAG 1 cut(s) 316
BspPI GGATC 2 cut(s) 14, 27
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssMI GATC 2 cut(s) 19, 95
Bst4CI ACNGT 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 111
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 232
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 2 cut(s) 22, 98
BstMBI GATC 2 cut(s) 19, 95
BstNSI RCATGY 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 298
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 98
CfoI GCGC 1 cut(s) 231
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 212
CviAII CATG 3 cut(s) 46, 103, 268
CviJI RGCY 5 cut(s) 16, 213, 263, 275, 311
CviKI_1 RGCY 5 cut(s) 16, 213, 263, 275, 311
DdeI CTNAG 1 cut(s) 111
DpnI GATC 2 cut(s) 21, 97
DpnII GATC 2 cut(s) 19, 95
DraI TTTAAA 2 cut(s) 91, 279
Eco47III AGCGCT 1 cut(s) 230
Eco91I GGTNACC 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 82
FaeI CATG 3 cut(s) 49, 106, 271
FaiI YATR 5 cut(s) 47, 104, 244, 246, 269
FatI CATG 3 cut(s) 45, 102, 267
FauI CCCGC 1 cut(s) 279
FauNDI CATATG 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 230
GluI GCNGC 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 232
HaeIII GGCC 1 cut(s) 213
HapII CCGG 2 cut(s) 17, 141
HhaI GCGC 1 cut(s) 231
Hin1II CATG 3 cut(s) 49, 106, 271
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HinfI GANTC 1 cut(s) 317
HpaII CCGG 2 cut(s) 17, 141
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 1 cut(s) 52
HpyAV CCTTC 3 cut(s) 211, 289, 301
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 4 cut(s) 118, 176, 248, 314
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 3 cut(s) 49, 106, 271
HspAI GCGC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 19, 95
LpnPI CCDG 3 cut(s) 30, 154, 239
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 1 cut(s) 152
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 21, 97
MboI GATC 2 cut(s) 19, 95
MboII GAAGA 2 cut(s) 158, 316
MflI RGATCY 1 cut(s) 19
MluCI AATT 2 cut(s) 150, 195
MnlI CCTC 3 cut(s) 114, 285, 326
MseI TTAA 3 cut(s) 30, 90, 278
MspI CCGG 2 cut(s) 17, 141
NdeI CATATG 1 cut(s) 244
NdeII GATC 2 cut(s) 19, 95
NlaIII CATG 3 cut(s) 49, 106, 271
NlaIV GGNNCC 2 cut(s) 21, 73
NspI RCATGY 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 212
PfeI GAWTC 1 cut(s) 317
PkrI GCNGC 1 cut(s) 313
PspEI GGTNACC 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 21, 73
PspPI GGNCC 1 cut(s) 212
PstI CTGCAG 1 cut(s) 316
PsuI RGATCY 1 cut(s) 19
SaqAI TTAA 3 cut(s) 30, 90, 278
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 2 cut(s) 19, 95
Sau96I GGNCC 1 cut(s) 212
SetI ASST 5 cut(s) 73, 89, 117, 277, 337
SfaNI GCATC 1 cut(s) 152
SfcI CTRYAG 1 cut(s) 312
Sse9I AATT 2 cut(s) 150, 195
SsiI CCGC 1 cut(s) 286
SspMI CTAG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 51
TasI AATT 2 cut(s) 150, 195
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 3 cut(s) 30, 90, 278
Tru9I TTAA 3 cut(s) 30, 90, 278
TseI GCWGC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 119, 146
TspGWI ACGGA 2 cut(s) 12, 64
XceI RCATGY 1 cut(s) 49
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.