Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012105

Physical Location & Seq

Genomic Coordinates Reverse (-)

43569336 .. 43570605

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003043

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTTTGAGAAAAGCACTGAGAAAGGGTCCGTTTGGGTTACCTTCAAAAGATTATTAGTCTTGACTAACAATCTTATTCGGAATTTGATTGGAAAGGTTGGAGCAAAGGAACATCAGCGATTTCAAGCTTCTTATGCAACTGTCCTTAAGGCTCACATGACTGCTCTAAAGAAGCGGGAGAGGAAGGATAAGAAAAAGGCTGCAGAGAAGAAAAAAGGGGGTGCAAAGAAGGTCAAGACAGATCCCATGCATGCTAGCATCTCTCCAAAGAGGCACAACTTGAGCGATTTCATGAAGTACAAGCGACTTGATCGGAAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP14

Protein Analysis

108

Amino Acids

12.47

Weight (kDa)

10.66

Isoelectric Point (pI)

25.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43640 AT2G43640 AT2G43640
fragaria_vesca	FvH4_5g22590
malus_domestica	MD08G1231600.v1.1 MD15G1424200.v1.1
prunus_persica	Prupe.1G570200_v2.0.a1
pyrus_communis	pycom08g20140 pycom15g37620
rosa_chinensis	RchiOBHm_Chr7g0210361
rosa_laevigata	RLG00000003043
rosa_multiflora	Rmu_sc0003807.1_g000004
rosa_roxburghii	Rroxscaffold_3G00248350
rosa_rugosa	Rorug07G0121400
rosa_samantha	Rh7AG254100 Rh7BG249000 Rh7CG270900 Rh7DG261600
rosa_wichuraiana	Rw7G021660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	175
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	1 cut(s)	299
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	46, 125
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AlwI	GGATC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	27
AsuNHI	GCTAGC	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	201
BfrI	CTTAAG	1 cut(s)	146
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	28
BmsI	GCATC	1 cut(s)	267
BmtI	GCTAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	241, 310
BspACI	CCGC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	10
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	205
BspOI	GCTAGC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	236
BspTI	CTTAAG	1 cut(s)	146
BssMI	GATC	2 cut(s)	241, 310
Bst4CI	ACNGT	1 cut(s)	142
BstAFI	CTTAAG	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	252, 256
BstDEI	CTNAG	1 cut(s)	18
BstEII	GGTNACC	1 cut(s)	37
BstKTI	GATC	2 cut(s)	244, 313
BstMBI	GATC	2 cut(s)	241, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	254
BstPI	GGTNACC	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	2 cut(s)	252, 256
CciI	TCATGA	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	4 cut(s)	157, 247, 251, 292
CviJI	RGCY	3 cut(s)	128, 152, 200
CviKI_1	RGCY	3 cut(s)	128, 152, 200
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	2 cut(s)	243, 312
DpnII	GATC	2 cut(s)	241, 310
Eco47I	GGWCC	1 cut(s)	27
Eco91I	GGTNACC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	252
FaeI	CATG	4 cut(s)	160, 250, 254, 295
FaiI	YATR	5 cut(s)	135, 158, 248, 252, 293
FatI	CATG	4 cut(s)	156, 246, 250, 291
FauI	CCCGC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	160, 250, 254, 295
HindIII	AAGCTT	1 cut(s)	126
Hpy188I	TCNGA	2 cut(s)	81, 315
Hpy188III	TCNNGA	3 cut(s)	61, 235, 292
HpyAV	CCTTC	3 cut(s)	52, 178, 223
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	4 cut(s)	137, 203, 224, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	4 cut(s)	160, 250, 254, 295
Kzo9I	GATC	2 cut(s)	241, 310
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	243, 312
MboI	GATC	2 cut(s)	241, 310
MboII	GAAGA	1 cut(s)	220
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	2 cut(s)	174, 264
Mph1103I	ATGCAT	1 cut(s)	252
MseI	TTAA	1 cut(s)	147
MspCI	CTTAAG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	2 cut(s)	241, 310
NheI	GCTAGC	1 cut(s)	254
NlaIII	CATG	4 cut(s)	160, 250, 254, 295
NlaIV	GGNNCC	1 cut(s)	28
NsiI	ATGCAT	1 cut(s)	252
NspI	RCATGY	1 cut(s)	254
PaeI	GCATGC	1 cut(s)	254
PagI	TCATGA	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	202
PspEI	GGTNACC	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	241, 310
Sau96I	GGNCC	1 cut(s)	27
SetI	ASST	4 cut(s)	44, 99, 130, 234
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	27
SmlI	CTYRAG	2 cut(s)	146, 280
SmoI	CTYRAG	2 cut(s)	146, 280
SphI	GCATGC	1 cut(s)	254
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	142
TasI	AATT	1 cut(s)	82
TatI	WGTACW	1 cut(s)	297
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	22
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	280, 308
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	1 cut(s)	254
XspI	CTAG	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.