AT2G44010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017887
Physical Location & Seq
Forward (+)
18216574 .. 18217453
880 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44010.1

Sequence Viewer

Length: 306 bp
ATGGATGGTTTAATACCAATGGCCCTTAAGGCCGTGAAGAAGAACCTAACTCGTCGTCGTTACGAACGTCTCTCCTATTCCGCAACAACTCGTGAGTCTTACGACTTCGCTTCCGATATTGAAATGAACGTCGACGGTCGTCACCATCGCCGTGGCTGGTCCGTTGGAGATTTCTCATCGTTATCAAGCCGGGAAACCAAAAGAAACGGTGGTGTAGCTCCGGAGAAGAGTCTTACTCCGCCGCGGGAGGGTCAACTTGTAAGATTCAAGAGCCATAGATTGTTTTCTTGCATCTCAGGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.52

Weight (kDa)

10.26

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44010
fragaria_vesca FvH4_1g00150
prunus_persica Prupe.7G270300_v2.0.a1
pyrus_communis pycom15g12880 pycom290g00160
rosa_roxburghii Rroxscaffold_2G00156070
rosa_rugosa Rorug01G0454000
rosa_samantha Rh2AG002100 Rh2CG002000 Rh2DG002200
rosa_wichuraiana Rw2G000180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 132
AccII CGCG 1 cut(s) 244
AccIII TCCGGA 1 cut(s) 220
AciI CCGC 4 cut(s) 81, 239, 242, 244
AfiI CCNNNNNNNGG 1 cut(s) 248
AflII CTTAAG 1 cut(s) 26
AgsI TTSAA 2 cut(s) 122, 268
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw26I GTCTC 1 cut(s) 74
Aor13HI TCCGGA 1 cut(s) 220
AoxI GGCC 2 cut(s) 21, 30
AspS9I GGNCC 2 cut(s) 22, 159
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 159
BauI CACGAG 1 cut(s) 90
BccI CCATC 1 cut(s) 153
BceAI ACGGC 2 cut(s) 17, 135
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 74
BfrI CTTAAG 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 29
BisI GCNGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 2 cut(s) 22, 159
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 300
BoxI GACNNNNGTC 1 cut(s) 138
BplI GAGNNNNNCTC 2 cut(s) 220, 252
BpuMI CCSGG 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 151, 242
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 248
BseAI TCCGGA 1 cut(s) 220
BseDI CCNNGG 2 cut(s) 151, 242
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 244
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 2 cut(s) 23, 32
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 2 cut(s) 190, 221
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 74
BsmBI CGTCTC 1 cut(s) 74
BsnI GGCC 2 cut(s) 23, 32
Bsp13I TCCGGA 1 cut(s) 220
BspACI CCGC 4 cut(s) 81, 239, 242, 244
BspANI GGCC 2 cut(s) 23, 32
BspEI TCCGGA 1 cut(s) 220
BspFNI CGCG 1 cut(s) 244
BspTI CTTAAG 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 151, 242
BssSI CACGAG 1 cut(s) 90
Bst2BI CACGAG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 137, 209
Bst6I CTCTTC 1 cut(s) 221
BstAFI CTTAAG 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 295
BstDSI CCRYGG 2 cut(s) 151, 242
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 74
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstPAI GACNNNNGTC 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 189
BstUI CGCG 1 cut(s) 244
BstXI CCANNNNNNTGG 1 cut(s) 152
BsuRI GGCC 2 cut(s) 23, 32
BtgI CCRYGG 2 cut(s) 151, 242
BtgZI GCGATG 1 cut(s) 131
BtsCI GGATG 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 22, 159
Cfr42I CCGCGG 1 cut(s) 245
CviJI RGCY 6 cut(s) 23, 32, 156, 189, 218, 273
CviKI_1 RGCY 6 cut(s) 23, 32, 156, 189, 218, 273
DdeI CTNAG 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
EciI GGCGGA 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 74
FaiI YATR 1 cut(s) 276
FauI CCCGC 1 cut(s) 237
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 242
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 242
GluI GCNGC 1 cut(s) 242
HaeIII GGCC 2 cut(s) 23, 32
HapII CCGG 2 cut(s) 190, 221
HincII GTYRAC 2 cut(s) 133, 254
HindII GTYRAC 2 cut(s) 133, 254
HinfI GANTC 3 cut(s) 95, 229, 264
HpaII CCGG 2 cut(s) 190, 221
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 133, 254
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 3 cut(s) 92, 221, 268
Hpy8I GTNNAC 2 cut(s) 133, 254
Hpy99I CGWCG 4 cut(s) 57, 60, 134, 137
HpyCH4III ACNGT 2 cut(s) 137, 209
HpyCH4IV ACGT 2 cut(s) 67, 129
HpyCH4V TGCA 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 295
HpySE526I ACGT 2 cut(s) 67, 129
Kpn2I TCCGGA 1 cut(s) 220
KspI CCGCGG 1 cut(s) 245
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 4 cut(s) 142, 203, 234, 282
LweI GCATC 1 cut(s) 300
MaeII ACGT 2 cut(s) 67, 129
MaeIII GTNAC 2 cut(s) 59, 140
MboII GAAGA 3 cut(s) 49, 52, 238
MlyI GAGTC 2 cut(s) 104, 238
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 1 cut(s) 241
MroI TCCGGA 1 cut(s) 220
MseI TTAA 2 cut(s) 11, 27
MslI CAYNNNNRTG 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 244
MspCI CTTAAG 1 cut(s) 26
MspI CCGG 2 cut(s) 190, 221
MspR9I CCNGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 64
PfeI GAWTC 1 cut(s) 264
PkrI GCNGC 1 cut(s) 243
PleI GAGTC 2 cut(s) 103, 237
PpsI GAGTC 2 cut(s) 103, 237
PshAI GACNNNNGTC 1 cut(s) 138
PspPI GGNCC 2 cut(s) 22, 159
RseI CAYNNNNRTG 1 cut(s) 150
SacII CCGCGG 1 cut(s) 245
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 11, 27
SatI GCNGC 1 cut(s) 242
Sau96I GGNCC 2 cut(s) 22, 159
SchI GAGTC 2 cut(s) 104, 238
ScrFI CCNGG 1 cut(s) 191
SetI ASST 5 cut(s) 48, 70, 132, 220, 301
SfaNI GCATC 1 cut(s) 300
SfiI GGCCNNNNNGGCC 1 cut(s) 29
Sfr303I CCGCGG 1 cut(s) 245
SgrBI CCGCGG 1 cut(s) 245
SgrDI CGTCGACG 1 cut(s) 131
SinI GGWCC 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SsiI CCGC 4 cut(s) 81, 239, 242, 244
StyD4I CCNGG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 137, 209
TaiI ACGT 2 cut(s) 70, 132
TaqI TCGA 1 cut(s) 132
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 2 cut(s) 11, 27
Tru9I TTAA 2 cut(s) 11, 27
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 140
TspGWI ACGGA 1 cut(s) 151
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.