Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0017887

Physical Location & Seq

Genomic Coordinates Reverse (-)

86670 .. 87107

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAGGGTCTGATCCCATTGGTGTTCAAGGCGATTAAGAGGAACAGAAGTCGGCAGCAACACACGAGGAGCCTCTCAGTTCAAACCCCTTACTTCTTCGTCGACGATGACGACGACCATCATCAACATACCAGTACTAGTACTGCTGCAGCAGCTTTGCATGGAAGCGCTACTCAAACCAATTACCTCTATATCACACCTCCTGCTGTTAATATCCTGCAGAATGCTACAACCGATCATCATCAGCACCTTCACCACCGACGACACAAATCTGTTTCTGTAGTTGGTGATCGGGGCTACTCATTTGGAATCGCAGATGAGGAGCTAGATAACAACCAGCAGATGGCAAAGGTTGATGATCATCAACGGCCAAAGCAACTTGTCCGGTTTAGGAGCCATAGATCATCCTTGTTCTCATGCATTTCTGGTGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.42

Weight (kDa)

8.86

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44010
fragaria_vesca	FvH4_1g00150
prunus_persica	Prupe.7G270300_v2.0.a1
pyrus_communis	pycom15g12880 pycom290g00160
rosa_roxburghii	Rroxscaffold_2G00156070
rosa_rugosa	Rorug01G0454000
rosa_samantha	Rh2AG002100 Rh2CG002000 Rh2DG002200
rosa_wichuraiana	Rw2G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	7
AcoI	YGGCCR	1 cut(s)	368
AfaI	GTAC	2 cut(s)	136, 142
AfeI	AGCGCT	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	28, 83
AhlI	ACTAGT	1 cut(s)	137
AluBI	AGCT	2 cut(s)	155, 325
AluI	AGCT	2 cut(s)	155, 325
AlwI	GGATC	1 cut(s)	7
Aor51HI	AGCGCT	1 cut(s)	169
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	5 cut(s)	55, 146, 149, 152, 431
AspLEI	GCGC	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	245, 299
BauI	CACGAG	1 cut(s)	64
BbvI	GCAGC	5 cut(s)	67, 133, 161, 164, 418
BccI	CCATC	2 cut(s)	126, 337
BceAI	ACGGC	1 cut(s)	383
BclI	TGATCA	1 cut(s)	358
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	3 cut(s)	138, 326, 436
BfmI	CTRYAG	3 cut(s)	147, 218, 279
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	5 cut(s)	56, 147, 150, 153, 432
BlsI	GCNGC	5 cut(s)	57, 148, 151, 154, 433
BmcAI	AGTACT	2 cut(s)	136, 142
BmiI	GGNNCC	2 cut(s)	71, 395
BsaBI	GATNNNNATC	2 cut(s)	240, 360
BsaWI	WCCGGW	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	132
Bse8I	GATNNNNATC	2 cut(s)	240, 360
BseGI	GGATG	1 cut(s)	404
BseJI	GATNNNNATC	2 cut(s)	240, 360
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	2 cut(s)	82, 335
BseXI	GCAGC	5 cut(s)	67, 133, 161, 164, 418
BshFI	GGCC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	385
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	370
Bsp143I	GATC	5 cut(s)	12, 235, 289, 358, 401
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	1 cut(s)	89
BspLI	GGNNCC	2 cut(s)	71, 395
BspMAI	CTGCAG	2 cut(s)	151, 222
BspPI	GGATC	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	132
BssMI	GATC	5 cut(s)	12, 235, 289, 358, 401
BssSI	CACGAG	1 cut(s)	64
Bst2BI	CACGAG	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	404
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	5 cut(s)	15, 238, 292, 361, 404
BstMBI	GATC	5 cut(s)	12, 235, 289, 358, 401
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstSFI	CTRYAG	3 cut(s)	147, 218, 279
BstV1I	GCAGC	5 cut(s)	67, 133, 161, 164, 418
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	404
CfoI	GCGC	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	135, 141
CviAII	CATG	2 cut(s)	161, 417
CviJI	RGCY	6 cut(s)	72, 155, 297, 325, 370, 396
CviKI_1	RGCY	6 cut(s)	72, 155, 297, 325, 370, 396
CviQI	GTAC	2 cut(s)	135, 141
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	5 cut(s)	14, 237, 291, 360, 403
DpnII	GATC	5 cut(s)	12, 235, 289, 358, 401
EaeI	YGGCCR	1 cut(s)	368
Eco47III	AGCGCT	1 cut(s)	169
EcoT22I	ATGCAT	1 cut(s)	422
FaeI	CATG	2 cut(s)	164, 420
FaiI	YATR	5 cut(s)	129, 162, 192, 399, 418
FatI	CATG	2 cut(s)	160, 416
FbaI	TGATCA	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	5 cut(s)	56, 147, 150, 153, 432
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	5 cut(s)	56, 147, 150, 153, 432
FspBI	CTAG	3 cut(s)	138, 326, 436
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	5 cut(s)	56, 147, 150, 153, 432
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	1 cut(s)	385
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	164, 420
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	309
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	2 cut(s)	245, 299
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	12
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	4 cut(s)	104, 107, 116, 264
HpyAV	CCTTC	1 cut(s)	260
HpyCH4V	TGCA	4 cut(s)	149, 160, 220, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	76
Hsp92II	CATG	2 cut(s)	164, 420
HspAI	GCGC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	5 cut(s)	12, 235, 289, 358, 401
LmnI	GCTCC	3 cut(s)	69, 322, 393
LpnPI	CCDG	6 cut(s)	145, 216, 230, 350, 398, 411
Lsp1109I	GCAGC	5 cut(s)	67, 133, 161, 164, 418
MaeI	CTAG	3 cut(s)	138, 326, 436
MalI	GATC	5 cut(s)	14, 237, 291, 360, 403
MboI	GATC	5 cut(s)	12, 235, 289, 358, 401
MboII	GAAGA	1 cut(s)	88
MluCI	AATT	1 cut(s)	181
MnlI	CCTC	6 cut(s)	33, 60, 83, 197, 210, 313
Mph1103I	ATGCAT	1 cut(s)	422
MseI	TTAA	2 cut(s)	36, 210
MspI	CCGG	1 cut(s)	385
Mva1269I	GAATGC	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	5 cut(s)	12, 235, 289, 358, 401
NlaIII	CATG	2 cut(s)	164, 420
NlaIV	GGNNCC	2 cut(s)	71, 395
NsiI	ATGCAT	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 111
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	309
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	5 cut(s)	57, 148, 151, 154, 433
PspN4I	GGNNCC	2 cut(s)	71, 395
PstI	CTGCAG	2 cut(s)	151, 222
RsaI	GTAC	2 cut(s)	136, 142
RsaNI	GTAC	2 cut(s)	135, 141
SalI	GTCGAC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	36, 210
SatI	GCNGC	5 cut(s)	56, 147, 150, 153, 432
Sau3AI	GATC	5 cut(s)	12, 235, 289, 358, 401
ScaI	AGTACT	2 cut(s)	136, 142
SetI	ASST	6 cut(s)	157, 189, 202, 252, 327, 354
SfcI	CTRYAG	3 cut(s)	147, 218, 279
SgrDI	CGTCGACG	1 cut(s)	101
SpeI	ACTAGT	1 cut(s)	137
Sse9I	AATT	1 cut(s)	181
SspMI	CTAG	3 cut(s)	138, 326, 436
TaqI	TCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	181
TatI	WGTACW	2 cut(s)	134, 140
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	2 cut(s)	36, 210
Tru9I	TTAA	2 cut(s)	36, 210
TseI	GCWGC	5 cut(s)	55, 146, 149, 152, 431
Van91I	CCANNNNNTGG	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	3 cut(s)	138, 326, 436
ZrmI	AGTACT	2 cut(s)	136, 142
Zsp2I	ATGCAT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.