pycom15g12880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017887
Physical Location & Seq
Reverse (-)
8818907 .. 8819389
483 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g12880.1

Sequence Viewer

Length: 483 bp
ATGGAGGGTCTAATCCCAATGGTTTACAAGGCAATGAAGGGGAACAGAACTCGCCGCCAGTACATCTGCCTCTCCTCCTCCGCCTCATTAGCAGCTACAGCAGCAGCACCACCACCAGCATCAGATCAAACTAATCATTACAACATCGCTGATTTCTACATCGATCACAACAGTTACGTCTCTGTCCCCCAACCTGCACCTTCAGCTGATCAACATCATCATCTTCCAACCATATTTAATGTCAATGGTACATCTGCCCCGGGGGATCAGTCGTCCACAACCACAAACATTATCAACCATGGTGGTCGTCATTTTCAACACCGCGGACACAAATCTGTTGCTCTCGGTTCTGCTTCCAACTCTATGCAAGGATTCTCGTCATCGGTGGACGCTGATGATTCCATTAACTCTCCTCCTTCAAAGCAACTTGTCCAGTATCAGAGCCATAGACGAACATTCTCGTGCATCAGTGGTGGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.14

Weight (kDa)

8.65

Isoelectric Point (pI)

59.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44010
fragaria_vesca FvH4_1g00150
prunus_persica Prupe.7G270300_v2.0.a1
pyrus_communis pycom15g12880 pycom290g00160
rosa_roxburghii Rroxscaffold_2G00156070
rosa_rugosa Rorug01G0454000
rosa_samantha Rh2AG002100 Rh2CG002000 Rh2DG002200
rosa_wichuraiana Rw2G000180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 476
AccII CGCG 1 cut(s) 324
AciI CCGC 4 cut(s) 55, 81, 322, 324
AclWI GGATC 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 2 cut(s) 62, 250
AgsI TTSAA 2 cut(s) 317, 420
AluBI AGCT 2 cut(s) 95, 206
AluI AGCT 2 cut(s) 95, 206
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 1 cut(s) 273
Ama87I CYCGRG 1 cut(s) 259
ApeKI GCWGC 3 cut(s) 92, 101, 104
AsuC2I CCSGG 2 cut(s) 260, 261
AvaI CYCGRG 1 cut(s) 259
BanI GGYRCC 1 cut(s) 476
BauI CACGAG 1 cut(s) 460
BbvI GCAGC 3 cut(s) 104, 113, 116
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 2 cut(s) 260, 261
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 1 cut(s) 481
BfmI CTRYAG 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 4 cut(s) 55, 93, 102, 105
BlsI GCNGC 4 cut(s) 56, 94, 103, 106
Bme1390I CCNGG 2 cut(s) 260, 261
BmeT110I CYCGRG 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 478
BmrFI CCNGG 2 cut(s) 260, 261
BmsI GCATC 2 cut(s) 128, 474
BpuMI CCSGG 2 cut(s) 260, 261
Bsa29I ATCGAT 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 5 cut(s) 258, 259, 260, 298, 322
Bse1I ACTGG 2 cut(s) 58, 433
Bse3DI GCAATG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 213
BseCI ATCGAT 1 cut(s) 162
BseDI CCNNGG 5 cut(s) 258, 259, 260, 298, 322
BseJI GATNNNNATC 1 cut(s) 213
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 58, 433
BseRI GAGGAG 3 cut(s) 64, 67, 402
BseXI GCAGC 3 cut(s) 104, 113, 116
BsgI GTGCAG 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 324
BshNI GGYRCC 1 cut(s) 476
BshVI ATCGAT 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 184
BsmBI CGTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 259
Bsp143I GATC 4 cut(s) 124, 163, 208, 265
Bsp19I CCATGG 1 cut(s) 298
BspACI CCGC 4 cut(s) 55, 81, 322, 324
BspDI ATCGAT 1 cut(s) 162
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 478
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 476
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 2 cut(s) 58, 433
BssECI CCNNGG 5 cut(s) 258, 259, 260, 298, 322
BssMI GATC 4 cut(s) 124, 163, 208, 265
BssSI CACGAG 1 cut(s) 460
BssT1I CCWWGG 1 cut(s) 298
Bst2BI CACGAG 1 cut(s) 460
Bst4CI ACNGT 1 cut(s) 173
BstDSI CCRYGG 2 cut(s) 298, 322
BstFNI CGCG 1 cut(s) 324
BstKTI GATC 4 cut(s) 127, 166, 211, 268
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 4 cut(s) 124, 163, 208, 265
BstMWI GCNNNNNNNGC 4 cut(s) 89, 98, 101, 203
BstSCI CCNGG 2 cut(s) 258, 259
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 104, 113, 116
Bsu15I ATCGAT 1 cut(s) 162
BsuTUI ATCGAT 1 cut(s) 162
BtgI CCRYGG 2 cut(s) 298, 322
BtgZI GCGATG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 475
BveI ACCTGC 1 cut(s) 202
Cfr42I CCGCGG 1 cut(s) 325
Cfr9I CCCGGG 1 cut(s) 259
ClaI ATCGAT 1 cut(s) 162
CseI GACGC 1 cut(s) 398
Csp6I GTAC 2 cut(s) 61, 249
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 1 cut(s) 299
CviJI RGCY 3 cut(s) 95, 206, 444
CviKI_1 RGCY 3 cut(s) 95, 206, 444
CviQI GTAC 2 cut(s) 61, 249
DpnI GATC 4 cut(s) 126, 165, 210, 267
DpnII GATC 4 cut(s) 124, 163, 208, 265
EciI GGCGGA 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 1 cut(s) 302
FaiI YATR 4 cut(s) 233, 300, 365, 447
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 298
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 4 cut(s) 55, 93, 102, 105
Fsp4HI GCNGC 4 cut(s) 55, 93, 102, 105
FspBI CTAG 1 cut(s) 481
GluI GCNGC 4 cut(s) 55, 93, 102, 105
HapII CCGG 1 cut(s) 260
HgaI GACGC 1 cut(s) 398
Hin1II CATG 1 cut(s) 302
HinfI GANTC 2 cut(s) 372, 398
HpaII CCGG 1 cut(s) 260
Hpy166II GTNNAC 3 cut(s) 25, 276, 388
Hpy188I TCNGA 2 cut(s) 124, 441
Hpy8I GTNNAC 3 cut(s) 25, 276, 388
HpyAV CCTTC 3 cut(s) 31, 210, 426
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 3 cut(s) 197, 367, 465
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 98, 101, 203
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 208
KspI CCGCGG 1 cut(s) 325
Kzo9I GATC 4 cut(s) 124, 163, 208, 265
LpnPI CCDG 5 cut(s) 71, 129, 207, 273, 446
Lsp1109I GCAGC 3 cut(s) 104, 113, 116
LweI GCATC 2 cut(s) 128, 474
MaeI CTAG 1 cut(s) 481
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 173
MalI GATC 4 cut(s) 126, 165, 210, 267
MboI GATC 4 cut(s) 124, 163, 208, 265
MboII GAAGA 1 cut(s) 215
MmeI TCCRAC 2 cut(s) 251, 381
MnlI CCTC 5 cut(s) 80, 85, 88, 94, 423
MseI TTAA 2 cut(s) 237, 405
MslI CAYNNNNRTG 1 cut(s) 460
MspA1I CMGCKG 2 cut(s) 206, 324
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 2 cut(s) 260, 261
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 4 cut(s) 89, 98, 101, 203
NciI CCSGG 2 cut(s) 260, 261
NcoI CCATGG 1 cut(s) 298
NdeII GATC 4 cut(s) 124, 163, 208, 265
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 1 cut(s) 478
PfeI GAWTC 2 cut(s) 372, 398
PkrI GCNGC 4 cut(s) 56, 94, 103, 106
PspN4I GGNNCC 1 cut(s) 478
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 2 cut(s) 62, 250
RsaNI GTAC 2 cut(s) 61, 249
RseI CAYNNNNRTG 1 cut(s) 460
SacII CCGCGG 1 cut(s) 325
SaqAI TTAA 2 cut(s) 237, 405
SatI GCNGC 4 cut(s) 55, 93, 102, 105
Sau3AI GATC 4 cut(s) 124, 163, 208, 265
ScrFI CCNGG 2 cut(s) 260, 261
SetI ASST 5 cut(s) 97, 180, 196, 202, 208
SfaNI GCATC 2 cut(s) 128, 474
SfcI CTRYAG 1 cut(s) 96
Sfr303I CCGCGG 1 cut(s) 325
SgrBI CCGCGG 1 cut(s) 325
SmaI CCCGGG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 460
SsiI CCGC 4 cut(s) 55, 81, 322, 324
SspMI CTAG 1 cut(s) 481
StyD4I CCNGG 2 cut(s) 258, 259
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 162
TatI WGTACW 1 cut(s) 60
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 2 cut(s) 372, 398
Tru1I TTAA 2 cut(s) 237, 405
Tru9I TTAA 2 cut(s) 237, 405
TscAI CASTG 1 cut(s) 475
TseI GCWGC 3 cut(s) 92, 101, 104
TspDTI ATGAA 1 cut(s) 50
TspMI CCCGGG 1 cut(s) 259
TspRI CASTG 1 cut(s) 475
XmaI CCCGGG 1 cut(s) 259
XspI CTAG 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.