Rorug01G0454000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017887
Physical Location & Seq
Forward (+)
54867655 .. 54868932
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0454000.1

Sequence Viewer

Length: 1182 bp
ATGGAGATGCTAGAAAACAATCGGGAAGCTGAATCCGTATTTGTTATGGTGGAGTTCGATCAAGATGATTCCTATACTGGTGGTATATACCAAATCAAACTTGACCAACTTCAGCTACTTGAGAGTGGTAAGTCTGTGGGCGGACCTAACACTGACCCTTCAACTCTACCAATCCTCGAACCTGTATTAAAGTTCTTTGATAAGAGTTGGAAGATGGAGGGATTCTGTTTATTTGATGGTGCCAGATTTGGCGGCCTATCTAAGTTATATCTTATGGTAAATCAAATCCCATGGGATTATCTCAAGCCCGTCACACCCAAGCACGCATTTTTCTTCGACACATCAAGCTTAGAACTGCAGAAGATTTCTCCACCCAAAACGTCTAAGGAGTATTGTCTTGTCATATCAGCATATGGAATGTTGTACTATCTTGCAGAACCAATGTGCTTTCCTAGGATTCAAGAACCATCATTCGAGCGATATGATCCGTCCAGTGATTCATGGGAGTCATTGCCTCCTTTCCCAGATTATTCTCTGGATCAGGCACAGACCAAGATGACCGGTTATGCCGTTTGTTATGGATATATACTGTTGTCCATGCAAACTGAAAAGAAATATGAAGCGGTGGCTTTTCATATTCATAGCAGAACATGGCACAAGGTCAAAATTAGTCCACAGAATCCTTATTATTATCCTTTCTACGGGAGGGCTGTGGTTGTAGGTGACACTATCTATGCCTTGGCACGTAGTCTGAATTTGGTTCTAGTATTCTCTTTCTGGTGGGATTCAGATGAGGATGGTGATATTGCCAAGCGTCGACATTTTTTGGGCACTCCATTGTCTTTGATATTAAAGGACAAGTATCATCCTCCGTGCCTGTTAATAGGGTTTAGGACTCAAAGAATTGTCGGTCAAGGGCAAGAAATGAACATCGAGACTGTTCGGTCATCCATTTTCCGCATAGCGATTGAAGGGAATCACGAATTTGAAATCAAGTTCAGCTTCACGCCTGATTATAAAGACATTGAACCGGAAGAAGAAGAGTATAGCGCAACTAATGCACTGCCTGAAAGTAAAAGTGCTGCATGGACTTCGAAGGTGGAAGAAGACTTCTTTTCCTTTTCAATTGGTCCTAAACTAGGATTGGAGGCATTCAGAACCAAAAAAGAAGATGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

393

Amino Acids

45.29

Weight (kDa)

5.05

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 107 - 242 1.5e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44010
fragaria_vesca FvH4_1g00150
prunus_persica Prupe.7G270300_v2.0.a1
pyrus_communis pycom15g12880 pycom290g00160
rosa_roxburghii Rroxscaffold_2G00156070
rosa_rugosa Rorug01G0454000
rosa_samantha Rh2AG002100 Rh2CG002000 Rh2DG002200
rosa_wichuraiana Rw2G000180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1017
AasI GACNNNNNNGTC 1 cut(s) 943
AccB1I GGYRCC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 817
AciI CCGC 4 cut(s) 141, 252, 623, 958
AclWI GGATC 2 cut(s) 479, 546
AcsI RAATTY 2 cut(s) 754, 983
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 2 cut(s) 701, 1139
AgeI ACCGGT 1 cut(s) 560
AgsI TTSAA 6 cut(s) 162, 461, 971, 989, 1028, 1125
AluBI AGCT 4 cut(s) 29, 115, 348, 1002
AluI AGCT 4 cut(s) 29, 115, 348, 1002
Alw26I GTCTC 1 cut(s) 929
AlwI GGATC 2 cut(s) 479, 546
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 1082
ApoI RAATTY 2 cut(s) 754, 983
AsiGI ACCGGT 1 cut(s) 560
AspA2I CCTAGG 1 cut(s) 452
AspLEI GCGC 1 cut(s) 1052
AspS9I GGNCC 2 cut(s) 143, 1130
AsuHPI GGTGA 2 cut(s) 734, 812
AsuII TTCGAA 1 cut(s) 1094
AvaII GGWCC 2 cut(s) 143, 1130
AvrII CCTAGG 1 cut(s) 452
BaeGI GKGCMC 1 cut(s) 833
BanI GGYRCC 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 1113
BbvI GCAGC 1 cut(s) 1069
BccI CCATC 4 cut(s) 208, 230, 475, 791
BceAI ACGGC 1 cut(s) 554
BcgI CGANNNNNNTGC 2 cut(s) 1074, 1108
BcoDI GTCTC 1 cut(s) 929
BfaI CTAG 4 cut(s) 11, 453, 764, 1139
BfmI CTRYAG 1 cut(s) 356
BisI GCNGC 2 cut(s) 253, 1083
BlnI CCTAGG 1 cut(s) 452
BlsI GCNGC 2 cut(s) 254, 1084
Bme18I GGWCC 2 cut(s) 143, 1130
BmgT120I GGNCC 2 cut(s) 143, 1130
BmiI GGNNCC 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 1113
Bpu14I TTCGAA 1 cut(s) 1094
BpuEI CTTGAG 2 cut(s) 140, 287
BsaAI YACGTR 1 cut(s) 746
BsaJI CCNNGG 3 cut(s) 290, 452, 738
BsaWI WCCGGW 2 cut(s) 560, 1030
Bsc4I CCNNNNNNNGG 2 cut(s) 701, 1139
Bse118I RCCGGY 1 cut(s) 560
Bse1I ACTGG 2 cut(s) 82, 492
Bse3DI GCAATG 1 cut(s) 509
BseDI CCNNGG 3 cut(s) 290, 452, 738
BseGI GGATG 3 cut(s) 802, 865, 947
BseLI CCNNNNNNNGG 2 cut(s) 701, 1139
BseMI GCAATG 1 cut(s) 509
BseNI ACTGG 2 cut(s) 82, 492
BseSI GKGCMC 1 cut(s) 833
BseXI GCAGC 1 cut(s) 1069
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 239
BshTI ACCGGT 1 cut(s) 560
BsiSI CCGG 2 cut(s) 561, 1031
BslI CCNNNNNNNGG 2 cut(s) 701, 1139
BsmAI GTCTC 1 cut(s) 929
BsmI GAATGC 1 cut(s) 1151
BsnI GGCC 1 cut(s) 255
Bsp119I TTCGAA 1 cut(s) 1094
Bsp1286I GDGCHC 1 cut(s) 833
Bsp143I GATC 3 cut(s) 58, 484, 538
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 4 cut(s) 141, 252, 623, 958
BspANI GGCC 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 360
BspPI GGATC 2 cut(s) 479, 546
BspT104I TTCGAA 1 cut(s) 1094
BspT107I GGYRCC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 509
BsrFI RCCGGY 1 cut(s) 560
BsrI ACTGG 2 cut(s) 82, 492
BssAI RCCGGY 1 cut(s) 560
BssECI CCNNGG 3 cut(s) 290, 452, 738
BssMI GATC 3 cut(s) 58, 484, 538
BssT1I CCWWGG 3 cut(s) 290, 452, 738
Bst4CI ACNGT 2 cut(s) 591, 940
Bst6I CTCTTC 1 cut(s) 1035
BstAPI GCANNNNNTGC 1 cut(s) 1058
BstBAI YACGTR 1 cut(s) 746
BstBI TTCGAA 1 cut(s) 1094
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 3 cut(s) 261, 349, 384
BstDSI CCRYGG 1 cut(s) 290
BstENI CCTNNNNNAGG 1 cut(s) 1137
BstF5I GGATG 3 cut(s) 802, 865, 947
BstHHI GCGC 1 cut(s) 1052
BstKTI GATC 3 cut(s) 61, 487, 541
BstMAI GTCTC 1 cut(s) 929
BstMBI GATC 3 cut(s) 58, 484, 538
BstMWI GCNNNNNNNGC 1 cut(s) 1058
BstSFI CTRYAG 1 cut(s) 356
BstSLI GKGCMC 1 cut(s) 833
BstV1I GCAGC 1 cut(s) 1069
BstV2I GAAGAC 1 cut(s) 1113
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 3 cut(s) 802, 865, 947
BtsI GCAGTG 1 cut(s) 1061
BtsIMutI CAGTG 3 cut(s) 150, 499, 1061
Cac8I GCNNGC 1 cut(s) 324
CfoI GCGC 1 cut(s) 1052
Cfr10I RCCGGY 1 cut(s) 560
Cfr13I GGNCC 2 cut(s) 143, 1130
CseI GACGC 1 cut(s) 803
Csp6I GTAC 1 cut(s) 424
CspAI ACCGGT 1 cut(s) 560
CviAII CATG 5 cut(s) 291, 501, 598, 651, 1086
CviJI RGCY 8 cut(s) 29, 115, 255, 307, 348, 629, 710, 1002
CviKI_1 RGCY 8 cut(s) 29, 115, 255, 307, 348, 629, 710, 1002
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 3 cut(s) 261, 349, 384
DpnI GATC 3 cut(s) 60, 486, 540
DpnII GATC 3 cut(s) 58, 484, 538
DrdI GACNNNNNNGTC 1 cut(s) 943
DseDI GACNNNNNNGTC 1 cut(s) 943
Eam1104I CTCTTC 1 cut(s) 1035
EarI CTCTTC 1 cut(s) 1035
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 3 cut(s) 290, 452, 738
Eco47I GGWCC 2 cut(s) 143, 1130
Eco57I CTGAAG 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 1137
EcoT14I CCWWGG 3 cut(s) 290, 452, 738
ErhI CCWWGG 3 cut(s) 290, 452, 738
FaeI CATG 5 cut(s) 294, 504, 601, 654, 1089
FalI AAGNNNNNCTT 2 cut(s) 986, 1018
FatI CATG 5 cut(s) 290, 500, 597, 650, 1085
FauNDI CATATG 1 cut(s) 412
FblI GTMKAC 1 cut(s) 817
Fnu4HI GCNGC 2 cut(s) 253, 1083
FokI GGATG 3 cut(s) 809, 852, 934
Fsp4HI GCNGC 2 cut(s) 253, 1083
FspBI CTAG 4 cut(s) 11, 453, 764, 1139
GlaI GCGC 1 cut(s) 1051
GluI GCNGC 2 cut(s) 253, 1083
HaeIII GGCC 1 cut(s) 255
HapII CCGG 2 cut(s) 561, 1031
HgaI GACGC 1 cut(s) 803
HhaI GCGC 1 cut(s) 1052
Hin1II CATG 5 cut(s) 294, 504, 601, 654, 1089
Hin6I GCGC 1 cut(s) 1050
HinP1I GCGC 1 cut(s) 1050
HincII GTYRAC 1 cut(s) 818
HindII GTYRAC 1 cut(s) 818
HindIII AAGCTT 1 cut(s) 346
HpaII CCGG 2 cut(s) 561, 1031
HphI GGTGA 2 cut(s) 734, 812
Hpy166II GTNNAC 2 cut(s) 674, 818
Hpy188I TCNGA 3 cut(s) 753, 790, 1157
Hpy188III TCNNGA 6 cut(s) 23, 62, 461, 536, 934, 980
Hpy8I GTNNAC 2 cut(s) 674, 818
Hpy99I CGWCG 1 cut(s) 819
HpyAV CCTTC 3 cut(s) 168, 965, 1090
HpyCH4III ACNGT 2 cut(s) 591, 940
HpyCH4IV ACGT 2 cut(s) 380, 745
HpyCH4V TGCA 5 cut(s) 358, 434, 601, 1061, 1085
HpyF10VI GCNNNNNNNGC 1 cut(s) 1058
HpyF3I CTNAG 3 cut(s) 261, 349, 384
HpySE526I ACGT 2 cut(s) 380, 745
Hsp92II CATG 5 cut(s) 294, 504, 601, 654, 1089
HspAI GCGC 1 cut(s) 1050
Kzo9I GATC 3 cut(s) 58, 484, 538
Lsp1109I GCAGC 1 cut(s) 1069
MaeI CTAG 4 cut(s) 11, 453, 764, 1139
MaeII ACGT 2 cut(s) 380, 745
MaeIII GTNAC 2 cut(s) 310, 722
MalI GATC 3 cut(s) 60, 486, 540
MboI GATC 3 cut(s) 58, 484, 538
MboII GAAGA 9 cut(s) 223, 325, 373, 1046, 1049, 1052, 1115, 1118, 1181
MfeI CAATTG 1 cut(s) 1125
MhlI GDGCHC 1 cut(s) 833
MluCI AATT 5 cut(s) 666, 754, 903, 983, 1125
MlyI GAGTC 2 cut(s) 515, 889
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 7 cut(s) 185, 211, 525, 699, 787, 879, 1141
MseI TTAA 3 cut(s) 188, 851, 881
MspI CCGG 2 cut(s) 561, 1031
MunI CAATTG 1 cut(s) 1125
Mva1269I GAATGC 1 cut(s) 1151
MwoI GCNNNNNNNGC 1 cut(s) 1058
NcoI CCATGG 1 cut(s) 290
NdeI CATATG 1 cut(s) 412
NdeII GATC 3 cut(s) 58, 484, 538
NlaIII CATG 5 cut(s) 294, 504, 601, 654, 1089
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 2 cut(s) 310, 722
NspV TTCGAA 1 cut(s) 1094
PctI GAATGC 1 cut(s) 1151
PfeI GAWTC 8 cut(s) 32, 68, 222, 457, 497, 679, 785, 976
PinAI ACCGGT 1 cut(s) 560
PkrI GCNGC 2 cut(s) 254, 1084
PleI GAGTC 2 cut(s) 514, 889
PpsI GAGTC 2 cut(s) 514, 889
Ppu21I YACGTR 1 cut(s) 746
PsiI TTATAA 1 cut(s) 1017
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 2 cut(s) 143, 1130
PstI CTGCAG 1 cut(s) 360
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
SalI GTCGAC 1 cut(s) 816
SaqAI TTAA 3 cut(s) 188, 851, 881
SatI GCNGC 2 cut(s) 253, 1083
Sau3AI GATC 3 cut(s) 58, 484, 538
Sau96I GGNCC 2 cut(s) 143, 1130
SchI GAGTC 2 cut(s) 515, 889
SduI GDGCHC 1 cut(s) 833
SfcI CTRYAG 1 cut(s) 356
SfuI TTCGAA 1 cut(s) 1094
SinI GGWCC 2 cut(s) 143, 1130
SmlI CTYRAG 2 cut(s) 119, 302
SmoI CTYRAG 2 cut(s) 119, 302
Sse9I AATT 5 cut(s) 666, 754, 903, 983, 1125
SsiI CCGC 4 cut(s) 141, 252, 623, 958
SspMI CTAG 4 cut(s) 11, 453, 764, 1139
StyI CCWWGG 3 cut(s) 290, 452, 738
TaaI ACNGT 2 cut(s) 591, 940
TaiI ACGT 2 cut(s) 383, 748
TaqI TCGA 7 cut(s) 57, 177, 336, 474, 817, 933, 1094
TaqII GACCGA 2 cut(s) 899, 933
TasI AATT 5 cut(s) 666, 754, 903, 983, 1125
TatI WGTACW 1 cut(s) 423
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 8 cut(s) 32, 68, 222, 457, 497, 679, 785, 976
Tru1I TTAA 3 cut(s) 188, 851, 881
Tru9I TTAA 3 cut(s) 188, 851, 881
TscAI CASTG 3 cut(s) 157, 499, 1068
TseFI GTSAC 2 cut(s) 310, 722
TseI GCWGC 1 cut(s) 1082
Tsp45I GTSAC 2 cut(s) 310, 722
TspDTI ATGAA 5 cut(s) 489, 623, 629, 633, 941
TspGWI ACGGA 3 cut(s) 25, 477, 861
TspRI CASTG 3 cut(s) 157, 499, 1068
VpaK11BI GGWCC 2 cut(s) 143, 1130
XagI CCTNNNNNAGG 1 cut(s) 1137
XapI RAATTY 2 cut(s) 754, 983
XmaJI CCTAGG 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 817
XspI CTAG 4 cut(s) 11, 453, 764, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.