Rh2DG002200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017887
Physical Location & Seq
Reverse (-)
160899 .. 162546
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG002200.1

Sequence Viewer

Length: 462 bp
ATGGAGGGTCTGATCCCATTGGTGTGCAAGGCGATTAAGAGGAACATAAGGGGGCAGAAACACAGGAGGAGTCTCTCAGTTCAAACCCCTTACTTCTTCGTCGACGACGACGTTGCTCCAGCTCATCGTCAATATACTAGTACTACTGCAGCAGCAGCTGTGCATGGAAGCGCTACTCAAAGCAATTACCTCTATATCACACCACCTGCTGTTAATATCCAGCAGATCAATGCTACAACTGATCATCGCCTTCACCACCGACGCCACAAATCTGTTTCTGTAGTTGGTGATCGAGGCAATTCATTTGGAATCGCAGAGGAGCTAGATCAGGGAAGTAATTACTACAATAATAACAATCAGCAGATGACAAAGGTCAATGATCGTCAACGGGCAAAGCAACTTGTCCGGTTTAGGAGCCATAGATCATCGTTGTTCTCATCCTGCATTTCTGGTGCTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.19

Weight (kDa)

10.14

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44010
fragaria_vesca FvH4_1g00150
prunus_persica Prupe.7G270300_v2.0.a1
pyrus_communis pycom15g12880 pycom290g00160
rosa_roxburghii Rroxscaffold_2G00156070
rosa_rugosa Rorug01G0454000
rosa_samantha Rh2AG002100 Rh2CG002000 Rh2DG002200
rosa_wichuraiana Rw2G000180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 214
Acc36I ACCTGC 1 cut(s) 214
AccI GTMKAC 1 cut(s) 102
AclWI GGATC 1 cut(s) 7
AcyI GRCGYC 1 cut(s) 262
AfaI GTAC 1 cut(s) 142
AfeI AGCGCT 1 cut(s) 172
AgsI TTSAA 1 cut(s) 83
AhlI ACTAGT 1 cut(s) 137
AluBI AGCT 3 cut(s) 122, 158, 322
AluI AGCT 3 cut(s) 122, 158, 322
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 1 cut(s) 7
AlwNI CAGNNNCTG 1 cut(s) 158
Aor51HI AGCGCT 1 cut(s) 172
ApeKI GCWGC 3 cut(s) 149, 152, 155
AspLEI GCGC 1 cut(s) 173
AsuHPI GGTGA 2 cut(s) 245, 299
BbvI GCAGC 3 cut(s) 161, 164, 167
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BclI TGATCA 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 77
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 3 cut(s) 138, 323, 460
BfmI CTRYAG 2 cut(s) 147, 279
BfoI RGCGCY 1 cut(s) 174
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 3 cut(s) 150, 153, 156
BlsI GCNGC 3 cut(s) 151, 154, 157
BmcAI AGTACT 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 416
BoxI GACNNNNGTC 1 cut(s) 371
BpmI CTGGAG 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 262
BsaWI WCCGGW 1 cut(s) 405
BseGI GGATG 1 cut(s) 437
BseMII CTCAG 1 cut(s) 90
BseRI GAGGAG 2 cut(s) 82, 332
BseXI GCAGC 3 cut(s) 161, 164, 167
BsiSI CCGG 1 cut(s) 406
BsmAI GTCTC 1 cut(s) 77
Bsp143I GATC 7 cut(s) 12, 225, 241, 289, 325, 379, 422
BspCNI CTCAG 1 cut(s) 89
BspLI GGNNCC 1 cut(s) 416
BspMAI CTGCAG 1 cut(s) 151
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 1 cut(s) 7
BssMI GATC 7 cut(s) 12, 225, 241, 289, 325, 379, 422
BssNI GRCGYC 1 cut(s) 262
BstACI GRCGYC 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 437
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 7 cut(s) 15, 228, 244, 292, 328, 382, 425
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 7 cut(s) 12, 225, 241, 289, 325, 379, 422
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstPAI GACNNNNGTC 1 cut(s) 371
BstSFI CTRYAG 2 cut(s) 147, 279
BstV1I GCAGC 3 cut(s) 161, 164, 167
BtgZI GCGATG 1 cut(s) 230
BtsCI GGATG 1 cut(s) 437
BveI ACCTGC 1 cut(s) 214
CaiI CAGNNNCTG 1 cut(s) 158
CfoI GCGC 1 cut(s) 173
CseI GACGC 1 cut(s) 270
Csp6I GTAC 1 cut(s) 141
CviAII CATG 1 cut(s) 164
CviJI RGCY 4 cut(s) 122, 158, 322, 417
CviKI_1 RGCY 4 cut(s) 122, 158, 322, 417
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 76
DpnI GATC 7 cut(s) 14, 227, 243, 291, 327, 381, 424
DpnII GATC 7 cut(s) 12, 225, 241, 289, 325, 379, 422
Eco47III AGCGCT 1 cut(s) 172
FaeI CATG 1 cut(s) 167
FaiI YATR 5 cut(s) 47, 135, 165, 195, 420
FatI CATG 1 cut(s) 163
FbaI TGATCA 1 cut(s) 241
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 150, 153, 156
FokI GGATG 1 cut(s) 424
Fsp4HI GCNGC 3 cut(s) 150, 153, 156
FspBI CTAG 3 cut(s) 138, 323, 460
GlaI GCGC 1 cut(s) 172
GluI GCNGC 3 cut(s) 150, 153, 156
GsuI CTGGAG 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 174
HapII CCGG 1 cut(s) 406
HgaI GACGC 1 cut(s) 270
HhaI GCGC 1 cut(s) 173
Hin1I GRCGYC 1 cut(s) 262
Hin1II CATG 1 cut(s) 167
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HincII GTYRAC 2 cut(s) 103, 386
HindII GTYRAC 2 cut(s) 103, 386
HinfI GANTC 2 cut(s) 70, 309
HpaII CCGG 1 cut(s) 406
HphI GGTGA 2 cut(s) 245, 299
Hpy166II GTNNAC 2 cut(s) 103, 386
Hpy188I TCNGA 1 cut(s) 12
Hpy8I GTNNAC 2 cut(s) 103, 386
Hpy99I CGWCG 5 cut(s) 104, 107, 110, 113, 264
HpyAV CCTTC 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 4 cut(s) 27, 149, 163, 444
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 76
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 262
Hsp92II CATG 1 cut(s) 167
HspAI GCGC 1 cut(s) 171
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 7 cut(s) 12, 225, 241, 289, 325, 379, 422
LmnI GCTCC 3 cut(s) 121, 319, 414
LpnPI CCDG 8 cut(s) 49, 132, 219, 233, 314, 419, 435, 454
Lsp1109I GCAGC 3 cut(s) 161, 164, 167
MaeI CTAG 3 cut(s) 138, 323, 460
MaeII ACGT 1 cut(s) 111
MalI GATC 7 cut(s) 14, 227, 243, 291, 327, 381, 424
MboI GATC 7 cut(s) 12, 225, 241, 289, 325, 379, 422
MboII GAAGA 1 cut(s) 88
MluCI AATT 3 cut(s) 184, 298, 337
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 5 cut(s) 33, 60, 200, 287, 310
MseI TTAA 2 cut(s) 36, 213
MslI CAYNNNNRTG 1 cut(s) 22
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 406
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 7 cut(s) 12, 225, 241, 289, 325, 379, 422
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 416
PaqCI CACCTGC 1 cut(s) 214
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 108
PfeI GAWTC 1 cut(s) 309
PkrI GCNGC 3 cut(s) 151, 154, 157
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
PshAI GACNNNNGTC 1 cut(s) 371
PspN4I GGNNCC 1 cut(s) 416
PstI CTGCAG 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 22
SalI GTCGAC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 36, 213
SatI GCNGC 3 cut(s) 150, 153, 156
Sau3AI GATC 7 cut(s) 12, 225, 241, 289, 325, 379, 422
ScaI AGTACT 1 cut(s) 142
SchI GAGTC 1 cut(s) 79
SetI ASST 7 cut(s) 114, 124, 160, 192, 208, 324, 375
SfcI CTRYAG 2 cut(s) 147, 279
SgrDI CGTCGACG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 22
SpeI ACTAGT 1 cut(s) 137
Sse9I AATT 3 cut(s) 184, 298, 337
SspMI CTAG 3 cut(s) 138, 323, 460
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 102, 292
TasI AATT 3 cut(s) 184, 298, 337
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 2 cut(s) 36, 213
Tru9I TTAA 2 cut(s) 36, 213
TseI GCWGC 3 cut(s) 149, 152, 155
TspDTI ATGAA 1 cut(s) 291
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 3 cut(s) 138, 323, 460
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.