AT2G44360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011888
Physical Location & Seq
Reverse (-)
18320732 .. 18321696
965 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44360.1

Sequence Viewer

Length: 408 bp
ATGGCGGAGGGTAAACCCGACGAGCAGCTCTTTCAGCTTCTTTCGGGTCTTCTTCAACAGGTAGAATCATTGACAAATACAGAAGAGGTTGAGCTACGTTCTAAGATTGAAGCTCTTGGTTTAGAAGTCACTAAAGTGCCATCAAAGTCTGCTCAACACCTCAATGAGGTGGAGATAGCTAAGGAATTGGACAAGTTATCAGCAAAGTTAGATGATGTGGATGAGATGATATCATCAGCTATAGCTTCTGATCCACAGGTTCAGACGCTTCTTAGCGGCACAGCTGATGTTTGGATGCCGGTTATCACTGCCGGCGCCGAAGAGAGACTCAACTTCACAGCCTCTCTTGCTGATGATGATGACCTTTCTAACAAGGAGACTACTACCGACAATACCAGCAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.59

Weight (kDa)

4.12

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011888)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44360
fragaria_vesca FvH4_7g00100 FvH4_7g00100
malus_domestica MD07G1001600.v1.1 MD15G1336100.v1.1
prunus_persica Prupe.2G003100_v2.0.a1
pyrus_communis pycom07g00200
rosa_chinensis RchiOBHm_Chr1g0313291
rosa_laevigata RLG00000030808
rosa_multiflora Rmu_sc0004761.1_g000006
rosa_roxburghii Rroxscaffold_4G00332270
rosa_rugosa RorugPtG0002800.1 RorugPtG0002900.1 RorugPtG0003300
rosa_samantha Rh1AG002500 Rh1CG001800 Rh1CG007200 Rh1DG002400
rosa_wichuraiana Rw1G000160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AciI CCGC 2 cut(s) 5, 276
AclWI GGATC 1 cut(s) 245
AcyI GRCGYC 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 2 cut(s) 56, 110
AleI CACNNNNGTG 1 cut(s) 134
AluBI AGCT 9 cut(s) 28, 37, 94, 113, 179, 239, 245, 284, 402
AluI AGCT 9 cut(s) 28, 37, 94, 113, 179, 239, 245, 284, 402
Alw26I GTCTC 2 cut(s) 319, 371
AlwI GGATC 1 cut(s) 245
ApeKI GCWGC 2 cut(s) 25, 399
AspLEI GCGC 1 cut(s) 317
BanI GGYRCC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 319, 371
BfmI CTRYAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 318
BisI GCNGC 3 cut(s) 26, 277, 400
BlsI GCNGC 3 cut(s) 27, 278, 401
BmiI GGNNCC 1 cut(s) 316
BmsI GCATC 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse118I RCCGGY 2 cut(s) 298, 311
BseGI GGATG 2 cut(s) 226, 300
BseLI CCNNNNNNNGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 37
BshNI GGYRCC 1 cut(s) 314
BsiSI CCGG 2 cut(s) 299, 312
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 2 cut(s) 319, 371
Bsp143I GATC 1 cut(s) 250
BspACI CCGC 2 cut(s) 5, 276
BspLI GGNNCC 1 cut(s) 316
BspPI GGATC 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 314
BsrFI RCCGGY 2 cut(s) 298, 311
BssAI RCCGGY 2 cut(s) 298, 311
BssMI GATC 1 cut(s) 250
BssNI GRCGYC 1 cut(s) 315
Bst6I CTCTTC 2 cut(s) 78, 315
BstACI GRCGYC 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 3 cut(s) 102, 180, 272
BstENI CCTNNNNNAGG 1 cut(s) 164
BstF5I GGATG 2 cut(s) 226, 300
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 2 cut(s) 319, 371
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 34, 347
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 41
BtsCI GGATG 2 cut(s) 226, 300
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 313
CfoI GCGC 1 cut(s) 317
Cfr10I RCCGGY 2 cut(s) 298, 311
CseI GACGC 1 cut(s) 274
DdeI CTNAG 3 cut(s) 102, 180, 272
DinI GGCGCC 1 cut(s) 316
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 2 cut(s) 78, 315
EarI CTCTTC 2 cut(s) 78, 315
EciI GGCGGA 1 cut(s) 20
Eco32I GATATC 1 cut(s) 231
EcoNI CCTNNNNNAGG 1 cut(s) 164
EcoRV GATATC 1 cut(s) 231
EgeI GGCGCC 1 cut(s) 316
EheI GGCGCC 1 cut(s) 316
FaiI YATR 1 cut(s) 242
Fnu4HI GCNGC 3 cut(s) 26, 277, 400
FokI GGATG 2 cut(s) 233, 307
Fsp4HI GCNGC 3 cut(s) 26, 277, 400
GlaI GCGC 1 cut(s) 316
GluI GCNGC 3 cut(s) 26, 277, 400
HaeII RGCGCY 1 cut(s) 318
HapII CCGG 2 cut(s) 299, 312
HgaI GACGC 1 cut(s) 274
HhaI GCGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 315
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HinfI GANTC 2 cut(s) 65, 327
HpaII CCGG 2 cut(s) 299, 312
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 250, 264
Hpy8I GTNNAC 1 cut(s) 14
Hpy99I CGWCG 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 347
HpyF3I CTNAG 3 cut(s) 102, 180, 272
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 315
HspAI GCGC 1 cut(s) 315
KasI GGCGCC 1 cut(s) 314
KroI GCCGGC 1 cut(s) 311
KroNI GCCGGC 1 cut(s) 313
Kzo9I GATC 1 cut(s) 250
LpnPI CCDG 4 cut(s) 44, 242, 312, 325
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 285
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 4 cut(s) 41, 44, 95, 332
MluCI AATT 1 cut(s) 185
Mly113I GGCGCC 1 cut(s) 315
MlyI GAGTC 1 cut(s) 321
MnlI CCTC 4 cut(s) 79, 160, 170, 352
MroNI GCCGGC 1 cut(s) 311
MseI TTAA 1 cut(s) 406
MslI CAYNNNNRTG 2 cut(s) 134, 162
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 2 cut(s) 299, 312
MwoI GCNNNNNNNGC 2 cut(s) 34, 347
NaeI GCCGGC 1 cut(s) 313
NarI GGCGCC 1 cut(s) 315
NdeII GATC 1 cut(s) 250
NgoMIV GCCGGC 1 cut(s) 311
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 134
PdiI GCCGGC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 3 cut(s) 27, 278, 401
PleI GAGTC 1 cut(s) 321
PluTI GGCGCC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 316
PvuII CAGCTG 1 cut(s) 284
RseI CAYNNNNRTG 2 cut(s) 134, 162
SaqAI TTAA 1 cut(s) 406
SatI GCNGC 3 cut(s) 26, 277, 400
Sau3AI GATC 1 cut(s) 250
SchI GAGTC 1 cut(s) 321
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 1 cut(s) 240
SfoI GGCGCC 1 cut(s) 316
SmiMI CAYNNNNRTG 2 cut(s) 134, 162
Sse9I AATT 1 cut(s) 185
SsiI CCGC 2 cut(s) 5, 276
SspDI GGCGCC 1 cut(s) 314
TaiI ACGT 1 cut(s) 100
TasI AATT 1 cut(s) 185
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 406
Tru9I TTAA 1 cut(s) 406
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 2 cut(s) 25, 399
Tsp45I GTSAC 1 cut(s) 127
TspRI CASTG 1 cut(s) 313
XagI CCTNNNNNAGG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.