Rh1CG007200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0011888
Physical Location & Seq
Forward (+)
1085224 .. 1086783
1560 bp
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UTR
Exon/CDS
Intron
Rh1CG007200.1

Sequence Viewer

Length: 381 bp
ATGGCAGAGGAAGGGAAGCCAGATGCCCAATTGTTCCACCTACTCTCTGGTCTCCTCCACCAGGTGGAAGCATTGACCAATCAAGAAGAAGTTGAATTGCGTTCAAAAATTGAAGCCCTTGGATTAGAGGTTACCAAAGTTCCCTCAAAGTCAACTCAGCATCTTGATGAGCTGGAAATAGCCAAGGAATTGGATGAATTATCTTCAAAGTTGGATGATGTAGATGAAATGATATCTTCAGCAATGGCTTCAGATCCTCAGGTCAAGTCACTATTGAGTGGTACTGCTGATGTATGGATGCCGGTCATTACTGCTAGTGCTGATGAACGGCGTACTTTCACAGCATCAAACCCAGAAGCAAGAGGGAAAAGTTTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.77

Weight (kDa)

4.53

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011888)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44360
fragaria_vesca FvH4_7g00100 FvH4_7g00100
malus_domestica MD07G1001600.v1.1 MD15G1336100.v1.1
prunus_persica Prupe.2G003100_v2.0.a1
pyrus_communis pycom07g00200
rosa_chinensis RchiOBHm_Chr1g0313291
rosa_laevigata RLG00000030808
rosa_multiflora Rmu_sc0004761.1_g000006
rosa_roxburghii Rroxscaffold_4G00332270
rosa_rugosa RorugPtG0002800.1 RorugPtG0002900.1 RorugPtG0003300
rosa_samantha Rh1AG002500 Rh1CG001800 Rh1CG007200 Rh1DG002400
rosa_wichuraiana Rw1G000160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 64
AclWI GGATC 1 cut(s) 248
AcuI CTGAAG 2 cut(s) 222, 234
AdeI CACNNNGTG 1 cut(s) 64
AfaI GTAC 2 cut(s) 283, 334
AfiI CCNNNNNNNGG 2 cut(s) 61, 64
AgsI TTSAA 4 cut(s) 95, 105, 113, 207
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 371
AxyI CCTNAGG 1 cut(s) 258
BceAI ACGGC 1 cut(s) 344
BciT130I CCWGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 4 cut(s) 13, 169, 288, 353
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 118, 183
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 64
Bse118I RCCGGY 1 cut(s) 301
Bse21I CCTNAGG 1 cut(s) 258
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 2 cut(s) 118, 183
BseGI GGATG 3 cut(s) 199, 220, 303
BseLI CCNNNNNNNGG 2 cut(s) 61, 64
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 170, 272
BseRI GAGGAG 1 cut(s) 44
BsiSI CCGG 1 cut(s) 302
BslI CCNNNNNNNGG 2 cut(s) 61, 64
BsmAI GTCTC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 253
BspCNI CTCAG 2 cut(s) 169, 271
BspPI GGATC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 301
BssECI CCNNGG 2 cut(s) 118, 183
BssMI GATC 1 cut(s) 253
BssT1I CCWWGG 2 cut(s) 118, 183
Bst2UI CCWGG 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 156, 258
BstEII GGTNACC 1 cut(s) 130
BstENI CCTNNNNNAGG 1 cut(s) 59
BstF5I GGATG 3 cut(s) 199, 220, 303
BstKTI GATC 1 cut(s) 256
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 253
BstNI CCWGG 1 cut(s) 62
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 190
BstYI RGATCY 1 cut(s) 253
Bsu36I CCTNAGG 1 cut(s) 258
BtsCI GGATG 3 cut(s) 199, 220, 303
Cfr10I RCCGGY 1 cut(s) 301
CsiI ACCWGGT 1 cut(s) 60
Csp6I GTAC 2 cut(s) 282, 333
CviJI RGCY 5 cut(s) 19, 116, 172, 182, 248
CviKI_1 RGCY 5 cut(s) 19, 116, 172, 182, 248
CviQI GTAC 2 cut(s) 282, 333
DdeI CTNAG 2 cut(s) 156, 258
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
DraIII CACNNNGTG 1 cut(s) 64
Eco130I CCWWGG 2 cut(s) 118, 183
Eco31I GGTCTC 1 cut(s) 56
Eco32I GATATC 1 cut(s) 234
Eco57I CTGAAG 2 cut(s) 222, 234
Eco81I CCTNAGG 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 59
EcoO65I GGTNACC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 60
EcoRV GATATC 1 cut(s) 234
EcoT14I CCWWGG 2 cut(s) 118, 183
ErhI CCWWGG 2 cut(s) 118, 183
FaiI YATR 1 cut(s) 295
FokI GGATG 3 cut(s) 206, 227, 310
FspBI CTAG 1 cut(s) 315
HapII CCGG 1 cut(s) 302
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HpaII CCGG 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 2 cut(s) 83, 164
Hpy8I GTNNAC 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 5
HpyF3I CTNAG 2 cut(s) 156, 258
Kzo9I GATC 1 cut(s) 253
LpnPI CCDG 8 cut(s) 33, 33, 47, 74, 158, 245, 315, 366
LweI GCATC 4 cut(s) 13, 169, 288, 353
MabI ACCWGGT 1 cut(s) 60
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 130, 267
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 3 cut(s) 98, 195, 228
MfeI CAATTG 1 cut(s) 29
MflI RGATCY 1 cut(s) 253
MluCI AATT 5 cut(s) 29, 95, 108, 188, 197
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 5 cut(s) 65, 121, 154, 267, 356
MroXI GAANNNNTTC 1 cut(s) 371
MseI TTAA 1 cut(s) 379
MslI CAYNNNNRTG 1 cut(s) 165
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 62
MunI CAATTG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 62
NdeII GATC 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 371
PflMI CCANNNNNTGG 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 60
PspEI GGTNACC 1 cut(s) 130
PspGI CCWGG 1 cut(s) 60
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 2 cut(s) 283, 334
RsaNI GTAC 2 cut(s) 282, 333
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 379
Sau3AI GATC 1 cut(s) 253
ScrFI CCNGG 1 cut(s) 62
SetI ASST 5 cut(s) 42, 66, 132, 174, 264
SexAI ACCWGGT 1 cut(s) 60
SfaNI GCATC 4 cut(s) 13, 169, 288, 353
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 5 cut(s) 29, 95, 108, 188, 197
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 2 cut(s) 118, 183
TasI AATT 5 cut(s) 29, 95, 108, 188, 197
Tru1I TTAA 1 cut(s) 379
Tru9I TTAA 1 cut(s) 379
TseFI GTSAC 1 cut(s) 267
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 3 cut(s) 210, 240, 339
Van91I CCANNNNNTGG 1 cut(s) 64
XagI CCTNNNNNAGG 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.