MD07G1001600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0011888
Physical Location & Seq
Reverse (-)
218368 .. 221086
2719 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1001600.v1.1.491

Sequence Viewer

Length: 393 bp
ATGGCAGAGGAAGGAAAGCCAGATGCCCAACTGTTTCAGCTCCTTTCTGGTCTCCTCCAACAGGTGGAAGCATTGACCAATGAAGAAGAAGTTGAATTGCGTTCAAAAATCGAAGCCCTTGGATTGGAGGTTACAAAACTTCCGTCGCAGTCAACGCAGCATCTGGACGAGCTGGAAATAGCCAAGGAGTTGGATAAATTATCGGCAAAGTTGGATGATGTAGATGAGATGATTTCTTCAGCGATGGCTGCAGATCCCCAGGTGAAGTCACTGTTGAGTGGTACTGCTGATGTATGGATGCCAGTTATTACTGCCACTGCTGATGAACGACGGAATTTTACAACTTCAGTGGCAGATGATAGCCCAGAAGCAAAAGAGAGAAGTTCCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.17

Weight (kDa)

4.26

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011888)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44360
fragaria_vesca FvH4_7g00100 FvH4_7g00100
malus_domestica MD07G1001600.v1.1 MD15G1336100.v1.1
prunus_persica Prupe.2G003100_v2.0.a1
pyrus_communis pycom07g00200
rosa_chinensis RchiOBHm_Chr1g0313291
rosa_laevigata RLG00000030808
rosa_multiflora Rmu_sc0004761.1_g000006
rosa_roxburghii Rroxscaffold_4G00332270
rosa_rugosa RorugPtG0002800.1 RorugPtG0002900.1 RorugPtG0003300
rosa_samantha Rh1AG002500 Rh1CG001800 Rh1CG007200 Rh1DG002400
rosa_wichuraiana Rw1G000160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 64
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 334
AcuI CTGAAG 2 cut(s) 222, 330
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 3 cut(s) 61, 64, 124
AgsI TTSAA 2 cut(s) 95, 105
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 2 cut(s) 40, 172
AluI AGCT 2 cut(s) 40, 172
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 248
AlwNI CAGNNNCTG 1 cut(s) 163
ApeKI GCWGC 2 cut(s) 157, 248
ApoI RAATTY 1 cut(s) 334
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AsuHPI GGTGA 1 cut(s) 274
BbvI GCAGC 2 cut(s) 169, 235
BccI CCATC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 2 cut(s) 158, 249
BlsI GCNGC 2 cut(s) 159, 250
Bme1390I CCNGG 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 3 cut(s) 13, 169, 288
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 3 cut(s) 118, 183, 258
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 64, 124
Bse1I ACTGG 2 cut(s) 302, 387
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 3 cut(s) 118, 183, 258
BseGI GGATG 2 cut(s) 220, 303
BseLI CCNNNNNNNGG 3 cut(s) 61, 64, 124
BseNI ACTGG 2 cut(s) 302, 387
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 2 cut(s) 169, 235
BslI CCNNNNNNNGG 3 cut(s) 61, 64, 124
BsmAI GTCTC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 253
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 56
BsrI ACTGG 2 cut(s) 302, 387
BssECI CCNNGG 3 cut(s) 118, 183, 258
BssMI GATC 1 cut(s) 253
BssT1I CCWWGG 2 cut(s) 118, 183
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 33, 273
BstENI CCTNNNNNAGG 1 cut(s) 59
BstF5I GGATG 2 cut(s) 220, 303
BstKTI GATC 1 cut(s) 256
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 2 cut(s) 154, 248
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 258
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 169, 235
BstX2I RGATCY 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 190
BstYI RGATCY 1 cut(s) 253
BtgZI GCGATG 1 cut(s) 257
BtsCI GGATG 2 cut(s) 220, 303
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 3 cut(s) 269, 315, 354
CaiI CAGNNNCTG 1 cut(s) 163
Csp6I GTAC 1 cut(s) 282
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviJI RGCY 7 cut(s) 19, 40, 116, 172, 182, 248, 363
CviKI_1 RGCY 7 cut(s) 19, 40, 116, 172, 182, 248, 363
CviQI GTAC 1 cut(s) 282
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Eco130I CCWWGG 2 cut(s) 118, 183
Eco31I GGTCTC 1 cut(s) 56
Eco57I CTGAAG 2 cut(s) 222, 330
EcoNI CCTNNNNNAGG 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 2 cut(s) 118, 183
ErhI CCWWGG 2 cut(s) 118, 183
FaiI YATR 1 cut(s) 295
Fnu4HI GCNGC 2 cut(s) 158, 249
FokI GGATG 2 cut(s) 227, 310
Fsp4HI GCNGC 2 cut(s) 158, 249
GluI GCNGC 2 cut(s) 158, 249
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 153
Hpy99I CGWCG 2 cut(s) 148, 333
HpyAV CCTTC 1 cut(s) 5
HpyCH4III ACNGT 2 cut(s) 33, 273
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 248
Kzo9I GATC 1 cut(s) 253
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 9 cut(s) 33, 33, 47, 149, 158, 245, 272, 315, 378
Lsp1109I GCAGC 2 cut(s) 169, 235
LweI GCATC 3 cut(s) 13, 169, 288
MaeIII GTNAC 2 cut(s) 130, 267
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 3 cut(s) 95, 98, 228
MflI RGATCY 1 cut(s) 253
MluCI AATT 3 cut(s) 95, 197, 334
MmeI TCCRAC 3 cut(s) 82, 171, 192
MnlI CCTC 2 cut(s) 65, 121
MspR9I CCNGG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 154, 248
NdeII GATC 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 267
PflMI CCANNNNNTGG 1 cut(s) 64
PkrI GCNGC 2 cut(s) 159, 250
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PstI CTGCAG 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 163
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SatI GCNGC 2 cut(s) 158, 249
Sau3AI GATC 1 cut(s) 253
ScrFI CCNGG 1 cut(s) 260
SetI ASST 5 cut(s) 42, 66, 132, 174, 264
SfaNI GCATC 3 cut(s) 13, 169, 288
SfcI CTRYAG 1 cut(s) 249
Sse9I AATT 3 cut(s) 95, 197, 334
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 2 cut(s) 118, 183
TaaI ACNGT 2 cut(s) 33, 273
TaqI TCGA 1 cut(s) 111
TasI AATT 3 cut(s) 95, 197, 334
TscAI CASTG 3 cut(s) 276, 322, 354
TseFI GTSAC 1 cut(s) 267
TseI GCWGC 2 cut(s) 157, 248
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 2 cut(s) 96, 339
TspGWI ACGGA 2 cut(s) 132, 346
TspRI CASTG 3 cut(s) 276, 322, 354
Van91I CCANNNNNTGG 1 cut(s) 64
XagI CCTNNNNNAGG 1 cut(s) 59
XapI RAATTY 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.