FvH4_7g00100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011888
Physical Location & Seq
Forward (+)
684109 .. 685953
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00100.t1

Sequence Viewer

Length: 330 bp
ATGGCAGAGGAAGGGAAGCCAGATGCGCAATTGTTCCAGCTGCTCTCCGGTCTCCTCCACCAGGTGGAAGCATTGACCAATCAAGAAGAAGTCGAATTGCGATCAAAAATTGAAGCCCTTGGATTAGAGGTTACCAAAGTTCCCTCAAAGTCAAGTCAGCATCTTGATGAGCTGGAAATAGCCAAGGAATTGGATAAGTTATCGGCAAAGCTGGATGATGTAGATGAAATGATATCTTCTGCAATGGCTTCAGATCCCCAGGTCAAGTCACTATTGAGCGGTACTGCTGATGTATGGATGCCGGTCATTACAGCTAGTGCTGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.85

Weight (kDa)

4.36

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011888)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44360
fragaria_vesca FvH4_7g00100 FvH4_7g00100
malus_domestica MD07G1001600.v1.1 MD15G1336100.v1.1
prunus_persica Prupe.2G003100_v2.0.a1
pyrus_communis pycom07g00200
rosa_chinensis RchiOBHm_Chr1g0313291
rosa_laevigata RLG00000030808
rosa_multiflora Rmu_sc0004761.1_g000006
rosa_roxburghii Rroxscaffold_4G00332270
rosa_rugosa RorugPtG0002800.1 RorugPtG0002900.1 RorugPtG0003300
rosa_samantha Rh1AG002500 Rh1CG001800 Rh1CG007200 Rh1DG002400
rosa_wichuraiana Rw1G000160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 27
AccB7I CCANNNNNTGG 1 cut(s) 64
AccBSI CCGCTC 1 cut(s) 279
AciI CCGC 1 cut(s) 279
AclWI GGATC 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 234
AdeI CACNNNGTG 1 cut(s) 64
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 2 cut(s) 61, 64
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 2 cut(s) 60, 258
AluBI AGCT 4 cut(s) 40, 172, 211, 314
AluI AGCT 4 cut(s) 40, 172, 211, 314
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 40
AspLEI GCGC 1 cut(s) 28
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 27
BciT130I CCWGG 2 cut(s) 62, 260
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 315
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 2 cut(s) 62, 260
BmrFI CCNGG 2 cut(s) 62, 260
BmsI GCATC 3 cut(s) 13, 169, 288
Bpu10I CCTNAGC 1 cut(s) 321
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 3 cut(s) 118, 183, 258
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 64
Bse118I RCCGGY 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 2 cut(s) 62, 260
BseDI CCNNGG 3 cut(s) 118, 183, 258
BseGI GGATG 2 cut(s) 220, 303
BseLI CCNNNNNNNGG 2 cut(s) 61, 64
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 48, 302
BslI CCNNNNNNNGG 2 cut(s) 61, 64
BsmAI GTCTC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 101, 253
BspACI CCGC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 313
BspPI GGATC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 301
BssECI CCNNGG 3 cut(s) 118, 183, 258
BssMI GATC 2 cut(s) 101, 253
BssT1I CCWWGG 2 cut(s) 118, 183
Bst2UI CCWGG 2 cut(s) 62, 260
BstDEI CTNAG 1 cut(s) 321
BstEII GGTNACC 1 cut(s) 130
BstENI CCTNNNNNAGG 1 cut(s) 59
BstF5I GGATG 2 cut(s) 220, 303
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 104, 256
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 2 cut(s) 101, 253
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 2 cut(s) 62, 260
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 60, 258
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 190
BstYI RGATCY 1 cut(s) 253
BtsCI GGATG 2 cut(s) 220, 303
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 301
CsiI ACCWGGT 1 cut(s) 60
Csp6I GTAC 1 cut(s) 282
CviJI RGCY 8 cut(s) 19, 40, 116, 172, 182, 211, 248, 314
CviKI_1 RGCY 8 cut(s) 19, 40, 116, 172, 182, 211, 248, 314
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 1 cut(s) 321
DpnI GATC 2 cut(s) 103, 255
DpnII GATC 2 cut(s) 101, 253
DraIII CACNNNGTG 1 cut(s) 64
Eco130I CCWWGG 2 cut(s) 118, 183
Eco31I GGTCTC 1 cut(s) 56
Eco32I GATATC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 234
Eco91I GGTNACC 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 59
EcoO65I GGTNACC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 60, 258
EcoRV GATATC 1 cut(s) 234
EcoT14I CCWWGG 2 cut(s) 118, 183
ErhI CCWWGG 2 cut(s) 118, 183
FaiI YATR 1 cut(s) 295
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 2 cut(s) 227, 310
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 1 cut(s) 315
FspI TGCGCA 1 cut(s) 27
GlaI GCGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 41
HapII CCGG 2 cut(s) 48, 302
HhaI GCGC 1 cut(s) 28
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HpaII CCGG 2 cut(s) 48, 302
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 2 cut(s) 83, 164
HpyAV CCTTC 1 cut(s) 5
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 1 cut(s) 321
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 101, 253
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 3 cut(s) 13, 169, 288
MabI ACCWGGT 1 cut(s) 60
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 130, 267
MalI GATC 2 cut(s) 103, 255
MbiI CCGCTC 1 cut(s) 279
MboI GATC 2 cut(s) 101, 253
MboII GAAGA 2 cut(s) 98, 228
MfeI CAATTG 1 cut(s) 29
MflI RGATCY 1 cut(s) 253
MluCI AATT 4 cut(s) 29, 95, 108, 188
MnlI CCTC 4 cut(s) 65, 121, 154, 316
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 2 cut(s) 48, 302
MspR9I CCNGG 2 cut(s) 62, 260
MunI CAATTG 1 cut(s) 29
MvaI CCWGG 2 cut(s) 62, 260
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 2 cut(s) 101, 253
NmuCI GTSAC 1 cut(s) 267
NsbI TGCGCA 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 64
PkrI GCNGC 1 cut(s) 42
Psp6I CCWGG 2 cut(s) 60, 258
PspEI GGTNACC 1 cut(s) 130
PspGI CCWGG 2 cut(s) 60, 258
PsuI RGATCY 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 40
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
RseI CAYNNNNRTG 1 cut(s) 165
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 2 cut(s) 101, 253
ScrFI CCNGG 2 cut(s) 62, 260
SetI ASST 7 cut(s) 42, 66, 132, 174, 213, 264, 316
SexAI ACCWGGT 1 cut(s) 60
SfaNI GCATC 3 cut(s) 13, 169, 288
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 4 cut(s) 29, 95, 108, 188
SsiI CCGC 1 cut(s) 279
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 60, 258
StyI CCWWGG 2 cut(s) 118, 183
TaqI TCGA 1 cut(s) 93
TasI AATT 4 cut(s) 29, 95, 108, 188
TseFI GTSAC 1 cut(s) 267
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 1 cut(s) 240
Van91I CCANNNNNTGG 1 cut(s) 64
XagI CCTNNNNNAGG 1 cut(s) 59
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.