Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011888

Physical Location & Seq

Genomic Coordinates Reverse (-)

343663 .. 346932

Gene Structure 3270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G003100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCTTAAATGTCATAATATTTTGACATATATGATTGAGTGCTCAAAGCAAATTATCGGCTGCCCATATAAATTCCCTAGGTACGAGCTGAAAACAGAAACAAAAACGAAAAAGATCCCAACAAACACATATGATCCCATCCCATGGCAGAGGAAGGAAAGCCAGATGCCCAACTGTTTCAGCTCCTCTCTGGTTGAAGCATTGACCAATGAAGAAGAGGTTGAATTGCGTTCAAAAATTGAAGCCCTTGGATTAGAGGTTACTAAACTTCCGTCAAAGTCAACTCATCATCTGGATGAGCTGGAAATAGCCAAGGAGTTGGATAAGTTATCGGCAAAGTTGGATGATGTAGATGAGATGATATCTTCAGCGATGGCTTCAGATCCACAGGTGAAGTCACTGCTGAGTGGTACTGCTGATGTATGGATGCCAGTTATTACTGCCAATGCTGATGAACGACGTAATTTTACCTCATCAATAGCAGATGATAGCCCAGAAGCAAAAGGGAAAAGTTTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.49

Weight (kDa)

5.18

Isoelectric Point (pI)

54.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44360
fragaria_vesca	FvH4_7g00100 FvH4_7g00100
malus_domestica	MD07G1001600.v1.1 MD15G1336100.v1.1
prunus_persica	Prupe.2G003100_v2.0.a1
pyrus_communis	pycom07g00200
rosa_chinensis	RchiOBHm_Chr1g0313291
rosa_laevigata	RLG00000030808
rosa_multiflora	Rmu_sc0004761.1_g000006
rosa_roxburghii	Rroxscaffold_4G00332270
rosa_rugosa	RorugPtG0002800.1 RorugPtG0002900.1 RorugPtG0003300
rosa_samantha	Rh1AG002500 Rh1CG001800 Rh1CG007200 Rh1DG002400
rosa_wichuraiana	Rw1G000160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AclWI	GGATC	3 cut(s)	109, 128, 377
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	2 cut(s)	351, 363
AfaI	GTAC	2 cut(s)	83, 412
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	5 cut(s)	197, 224, 234, 242, 517
AluBI	AGCT	3 cut(s)	88, 183, 301
AluI	AGCT	3 cut(s)	88, 183, 301
Alw21I	GWGCWC	1 cut(s)	44
AlwI	GGATC	3 cut(s)	109, 128, 377
ApeKI	GCWGC	1 cut(s)	60
ApoI	RAATTY	1 cut(s)	71
Asp700I	GAANNNNTTC	1 cut(s)	512
AspA2I	CCTAGG	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	403
AvrII	CCTAGG	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	2 cut(s)	146, 367
BfaI	CTAG	1 cut(s)	78
BisI	GCNGC	1 cut(s)	61
BlnI	CCTAGG	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	62
BmsI	GCATC	2 cut(s)	156, 417
BsaJI	CCNNGG	4 cut(s)	77, 143, 247, 312
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	431
BseDI	CCNNGG	4 cut(s)	77, 143, 247, 312
BseGI	GGATG	4 cut(s)	138, 301, 349, 432
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	3 cut(s)	114, 133, 382
Bsp19I	CCATGG	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	396
BspPI	GGATC	3 cut(s)	109, 128, 377
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	4 cut(s)	77, 143, 247, 312
BssMI	GATC	3 cut(s)	114, 133, 382
BssT1I	CCWWGG	4 cut(s)	77, 143, 247, 312
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	404
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	4 cut(s)	138, 301, 349, 432
BstKTI	GATC	3 cut(s)	117, 136, 385
BstMBI	GATC	3 cut(s)	114, 133, 382
BstV1I	GCAGC	1 cut(s)	47
BstX2I	RGATCY	2 cut(s)	114, 382
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	2 cut(s)	114, 382
BtgI	CCRYGG	1 cut(s)	143
BtgZI	GCGATG	1 cut(s)	386
BtsCI	GGATG	4 cut(s)	138, 301, 349, 432
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	82, 411
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	9 cut(s)	60, 88, 162, 183, 245, 301, 311, 377, 492
CviKI_1	RGCY	9 cut(s)	60, 88, 162, 183, 245, 301, 311, 377, 492
CviQI	GTAC	2 cut(s)	82, 411
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	3 cut(s)	116, 135, 384
DpnII	GATC	3 cut(s)	114, 133, 382
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	4 cut(s)	77, 143, 247, 312
Eco32I	GATATC	1 cut(s)	363
Eco57I	CTGAAG	2 cut(s)	351, 363
EcoRV	GATATC	1 cut(s)	363
EcoT14I	CCWWGG	4 cut(s)	77, 143, 247, 312
ErhI	CCWWGG	4 cut(s)	77, 143, 247, 312
FaeI	CATG	1 cut(s)	147
FatI	CATG	1 cut(s)	143
FauNDI	CATATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	4 cut(s)	125, 308, 356, 439
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	282
Hpy99I	CGWCG	1 cut(s)	462
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	460
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	114, 133, 382
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	7 cut(s)	176, 176, 278, 287, 374, 444, 507
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	2 cut(s)	156, 417
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	2 cut(s)	259, 396
MalI	GATC	3 cut(s)	116, 135, 384
MboI	GATC	3 cut(s)	114, 133, 382
MboII	GAAGA	3 cut(s)	224, 227, 357
MflI	RGATCY	2 cut(s)	114, 382
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	6 cut(s)	51, 71, 224, 237, 463, 517
MmeI	TCCRAC	2 cut(s)	300, 321
MnlI	CCTC	5 cut(s)	144, 196, 211, 250, 481
MroXI	GAANNNNTTC	1 cut(s)	512
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	294
NcoI	CCATGG	1 cut(s)	143
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	3 cut(s)	114, 133, 382
NlaIII	CATG	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	512
PflMI	CCANNNNNTGG	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	62
PsuI	RGATCY	2 cut(s)	114, 382
RsaI	GTAC	2 cut(s)	83, 412
RsaNI	GTAC	2 cut(s)	82, 411
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	3 cut(s)	114, 133, 382
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	9 cut(s)	83, 90, 185, 222, 261, 303, 393, 463, 473
SfaNI	GCATC	2 cut(s)	156, 417
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	6 cut(s)	51, 71, 224, 237, 463, 517
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	1 cut(s)	78
StyI	CCWWGG	4 cut(s)	77, 143, 247, 312
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	1 cut(s)	463
TasI	AATT	6 cut(s)	51, 71, 224, 237, 463, 517
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	396
TseI	GCWGC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	396
TspDTI	ATGAA	2 cut(s)	225, 468
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	1 cut(s)	405
Van91I	CCANNNNNTGG	1 cut(s)	144
XapI	RAATTY	1 cut(s)	71
XmaJI	CCTAGG	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	512
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.