Rh1CG001800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0011888
Physical Location & Seq
Reverse (-)
200217 .. 228786
28570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG001800.1

Sequence Viewer

Length: 459 bp
ATGGCAGAGGAAGGGAAGCCAGATGCCCAATTGTTCCACCTACTCTCTGGTCTCCTCCACCAGGTGGAAGCATTGACCAATCAAGAAGAAGTTGAATTGCGTTCAAAAATTGAAGCCCTTGGATTAGAGGTTACCAAAGTTCCCTCAAAGTCAACTCAGCATCTTGATGAGCTGGAAATAGCCAAGGAATTGGATGAATTATCTGCAAAGTTGGATGATGTAGATGAAATGATATCTTCAGCAATGGCTTCAGATCCTCAGGTCAAGTCACTATTGAGTGGTACTGCTGATGTATGGATGCCGGTCATTACTGCTAGTGCTGATGAACGGCGTACTTTCACAGCATCAAACCCAGAAGCAAAAGGGAAAAGTTTCAAGCCGCGGACGCCGTCGGCTTATTCTCTTCTTTCTGAAAACTGTGGAAATTCAAATTATTGGGTAAGAATTTCAAGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.66

Weight (kDa)

4.73

Isoelectric Point (pI)

30.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011888)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44360
fragaria_vesca FvH4_7g00100 FvH4_7g00100
malus_domestica MD07G1001600.v1.1 MD15G1336100.v1.1
prunus_persica Prupe.2G003100_v2.0.a1
pyrus_communis pycom07g00200
rosa_chinensis RchiOBHm_Chr1g0313291
rosa_laevigata RLG00000030808
rosa_multiflora Rmu_sc0004761.1_g000006
rosa_roxburghii Rroxscaffold_4G00332270
rosa_rugosa RorugPtG0002800.1 RorugPtG0002900.1 RorugPtG0003300
rosa_samantha Rh1AG002500 Rh1CG001800 Rh1CG007200 Rh1DG002400
rosa_wichuraiana Rw1G000160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 64
AccII CGCG 1 cut(s) 382
AciI CCGC 2 cut(s) 380, 382
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 2 cut(s) 424, 444
AcuI CTGAAG 2 cut(s) 222, 234
AcyI GRCGYC 1 cut(s) 386
AdeI CACNNNGTG 1 cut(s) 64
AfaI GTAC 2 cut(s) 283, 334
AfiI CCNNNNNNNGG 2 cut(s) 61, 64
AgsI TTSAA 6 cut(s) 95, 105, 113, 376, 429, 450
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 248
ApoI RAATTY 2 cut(s) 424, 444
Asp700I GAANNNNTTC 1 cut(s) 371
AxyI CCTNAGG 1 cut(s) 258
BceAI ACGGC 2 cut(s) 344, 373
BciT130I CCWGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 315
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
Bme1390I CCNGG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 4 cut(s) 13, 169, 288, 353
BsaHI GRCGYC 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 3 cut(s) 118, 183, 380
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 64
Bse118I RCCGGY 1 cut(s) 301
Bse21I CCTNAGG 1 cut(s) 258
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 3 cut(s) 118, 183, 380
BseGI GGATG 3 cut(s) 199, 220, 303
BseLI CCNNNNNNNGG 2 cut(s) 61, 64
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 170, 272
BseRI GAGGAG 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 382
BsiSI CCGG 1 cut(s) 302
BslI CCNNNNNNNGG 2 cut(s) 61, 64
BsmAI GTCTC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 2 cut(s) 380, 382
BspCNI CTCAG 2 cut(s) 169, 271
BspFNI CGCG 1 cut(s) 382
BspPI GGATC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 301
BssECI CCNNGG 3 cut(s) 118, 183, 380
BssMI GATC 1 cut(s) 253
BssNI GRCGYC 1 cut(s) 386
BssT1I CCWWGG 2 cut(s) 118, 183
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 419
Bst6I CTCTTC 1 cut(s) 408
BstACI GRCGYC 1 cut(s) 386
BstDEI CTNAG 2 cut(s) 156, 258
BstDSI CCRYGG 1 cut(s) 380
BstEII GGTNACC 1 cut(s) 130
BstENI CCTNNNNNAGG 1 cut(s) 59
BstF5I GGATG 3 cut(s) 199, 220, 303
BstFNI CGCG 1 cut(s) 382
BstKTI GATC 1 cut(s) 256
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstNI CCWGG 1 cut(s) 62
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 60
BstUI CGCG 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 190
BstYI RGATCY 1 cut(s) 253
Bsu36I CCTNAGG 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 380
BtsCI GGATG 3 cut(s) 199, 220, 303
Cfr10I RCCGGY 1 cut(s) 301
Cfr42I CCGCGG 1 cut(s) 383
CseI GACGC 1 cut(s) 394
CsiI ACCWGGT 1 cut(s) 60
Csp6I GTAC 2 cut(s) 282, 333
CviJI RGCY 8 cut(s) 19, 116, 172, 182, 248, 379, 395, 453
CviKI_1 RGCY 8 cut(s) 19, 116, 172, 182, 248, 379, 395, 453
CviQI GTAC 2 cut(s) 282, 333
DdeI CTNAG 2 cut(s) 156, 258
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
DraIII CACNNNGTG 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco130I CCWWGG 2 cut(s) 118, 183
Eco31I GGTCTC 1 cut(s) 56
Eco32I GATATC 1 cut(s) 234
Eco57I CTGAAG 2 cut(s) 222, 234
Eco81I CCTNAGG 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 59
EcoO65I GGTNACC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 60
EcoRV GATATC 1 cut(s) 234
EcoT14I CCWWGG 2 cut(s) 118, 183
ErhI CCWWGG 2 cut(s) 118, 183
FaiI YATR 1 cut(s) 295
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 3 cut(s) 206, 227, 310
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 1 cut(s) 315
GluI GCNGC 1 cut(s) 380
HapII CCGG 1 cut(s) 302
HgaI GACGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 386
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HpaII CCGG 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 2 cut(s) 253, 412
Hpy188III TCNNGA 2 cut(s) 83, 164
Hpy8I GTNNAC 1 cut(s) 153
Hpy99I CGWCG 1 cut(s) 394
HpyAV CCTTC 1 cut(s) 5
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpyF3I CTNAG 2 cut(s) 156, 258
Hsp92I GRCGYC 1 cut(s) 386
KspI CCGCGG 1 cut(s) 383
Kzo9I GATC 1 cut(s) 253
LpnPI CCDG 8 cut(s) 33, 33, 47, 74, 158, 245, 315, 366
LweI GCATC 4 cut(s) 13, 169, 288, 353
MabI ACCWGGT 1 cut(s) 60
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 130, 267
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 3 cut(s) 98, 228, 395
MfeI CAATTG 1 cut(s) 29
MflI RGATCY 1 cut(s) 253
MluCI AATT 8 cut(s) 29, 95, 108, 188, 197, 424, 430, 444
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 4 cut(s) 65, 121, 154, 267
MroXI GAANNNNTTC 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 382
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 62
MunI CAATTG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 62
MvnI CGCG 1 cut(s) 382
MwoI GCNNNNNNNGC 1 cut(s) 385
NdeII GATC 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 371
PflFI GACNNNGTC 1 cut(s) 388
PflMI CCANNNNNTGG 1 cut(s) 64
PkrI GCNGC 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 60
PspEI GGTNACC 1 cut(s) 130
PspGI CCWGG 1 cut(s) 60
PsuI RGATCY 1 cut(s) 253
PsyI GACNNNGTC 1 cut(s) 388
RsaI GTAC 2 cut(s) 283, 334
RsaNI GTAC 2 cut(s) 282, 333
RseI CAYNNNNRTG 1 cut(s) 165
SacII CCGCGG 1 cut(s) 383
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 1 cut(s) 253
ScrFI CCNGG 1 cut(s) 62
SetI ASST 5 cut(s) 42, 66, 132, 174, 264
SexAI ACCWGGT 1 cut(s) 60
SfaNI GCATC 4 cut(s) 13, 169, 288, 353
Sfr303I CCGCGG 1 cut(s) 383
SgrBI CCGCGG 1 cut(s) 383
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 8 cut(s) 29, 95, 108, 188, 197, 424, 430, 444
SsiI CCGC 2 cut(s) 380, 382
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 2 cut(s) 118, 183
TaaI ACNGT 1 cut(s) 419
TasI AATT 8 cut(s) 29, 95, 108, 188, 197, 424, 430, 444
TauI GCSGC 1 cut(s) 382
TseFI GTSAC 1 cut(s) 267
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 3 cut(s) 210, 240, 339
Tth111I GACNNNGTC 1 cut(s) 388
Van91I CCANNNNNTGG 1 cut(s) 64
XagI CCTNNNNNAGG 1 cut(s) 59
XapI RAATTY 2 cut(s) 424, 444
XcmI CCANNNNNNNNNTGG 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.