Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007646

Physical Location & Seq

Genomic Coordinates Reverse (-)

18411424 .. 18414153

Gene Structure 2730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTCCGGTCTCGGCACTCGCTAAGTATAAGCTGGTGTTTCTGGGAGATCAATCCGTCGGCAAAACCAGTATCATTACTCGATTCATGTACGACAAATTCGACAACACTTACCAGGCCACAATTGGTATTGATTTTCTATCAAAGACAATGTACCTTGAAGATCGAACGGTCAGACTTCAGTTGTGGGATACAGCTGGGCAAGAGCGATTCAGGAGTCTAATTCCGAGCTATATCAGGGATTCCTCCGTTGCTGTTATTGTGTATGATGTTGCAAGCAGGCAGTCCTTCCTAAACACTACTAAGTGGATCGATGAGGTTAGGACAGAACGTGGTAGTGATGTCATAGTCGTGCTTGTGGGAAACAAAACTGATCTAGTGGACAAAAGGCAAGTGTCAATAGAGGAAGCAGAAGCTAAGGCACGCGAACTTAATGTAATGTTCATCGAAACCAGTGCCAAAGCGGGCTTCAACATTAAGGCGCTCTTCCGCAAGATAGCAGCAGCTTTGCCGGGAATGGAGACATTGTCTTCAACAAAGCAAGAGGATATGGTTGATGTCAATCTCAAGTCTTCCAATGCAAATGCATCTCTCGCTCAGCAGCAATCAGGAGGATGCTCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0017076 GO:0019001 GO:0030054 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

208

Amino Acids

23.13

Weight (kDa)

7.67

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 166	4.9e-15	ADP-ribosylation factor family
Ras	PF00071	11 - 169	1.6e-58	Ras family
Roc	PF08477	11 - 125	3e-37	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	43 - 171	2.2e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44610
fragaria_vesca	FvH4_5g21020 FvH4_7g08750
malus_domestica	MD02G1225400.v1.1 MD07G1088300.v1.1
prunus_persica	Prupe.2G115200_v2.0.a1 Prupe.2G115200_v2.0.a1 Prupe.2G115200_v2.0.a1
pyrus_communis	pycom07g07090
rosa_chinensis	RchiOBHm_Chr1g0343981 RchiOBHm_Chr7g0208031
rosa_laevigata	RLG00000003260 RLG00000028937
rosa_multiflora	Rmu_sc0002039.1_g000014 Rmu_ssc0000434.1_g000030
rosa_roxburghii	Rroxscaffold_3G00250860 Rroxscaffold_4G00310180
rosa_rugosa	Rorug01G0170500 Rorug07G0101000
rosa_samantha	Rh1BG153300
rosa_wichuraiana	Rw0G014140 Rw0G018040 Rw0G020300 Rw1G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	426
AciI	CCGC	2 cut(s)	464, 490
AclWI	GGATC	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	2 cut(s)	92, 155
AgsI	TTSAA	3 cut(s)	161, 472, 534
AjnI	CCWGG	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	5 cut(s)	34, 197, 231, 416, 506
AluI	AGCT	5 cut(s)	34, 197, 231, 416, 506
Alw26I	GTCTC	2 cut(s)	16, 515
AlwI	GGATC	1 cut(s)	317
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	3 cut(s)	500, 503, 601
ApoI	RAATTY	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	484
AsuC2I	CCSGG	1 cut(s)	513
BbsI	GAAGAC	2 cut(s)	522, 564
BbvI	GCAGC	3 cut(s)	512, 515, 613
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	513
BcoDI	GTCTC	2 cut(s)	16, 515
BfaI	CTAG	1 cut(s)	377
BfoI	RGCGCY	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	3 cut(s)	501, 504, 602
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	3 cut(s)	502, 505, 603
Bme1390I	CCNGG	2 cut(s)	116, 513
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	116, 513
BmsI	GCATC	2 cut(s)	596, 605
BpiI	GAAGAC	2 cut(s)	522, 564
Bpu10I	CCTNAGC	1 cut(s)	417
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	1 cut(s)	513
Bsa29I	ATCGAT	1 cut(s)	312
BsaBI	GATNNNNATC	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bse1I	ACTGG	2 cut(s)	69, 453
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	116
BseCI	ATCGAT	1 cut(s)	312
BseGI	GGATG	1 cut(s)	620
BseJI	GATNNNNATC	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	611
BseNI	ACTGG	2 cut(s)	69, 453
BseXI	GCAGC	3 cut(s)	512, 515, 613
BseYI	CCCAGC	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	312
BsiSI	CCGG	2 cut(s)	8, 512
BsmAI	GTCTC	2 cut(s)	16, 515
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	16
Bsp143I	GATC	4 cut(s)	49, 163, 309, 373
Bsp1720I	GCTNAGC	1 cut(s)	597
BspACI	CCGC	2 cut(s)	464, 490
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	610
BspDI	ATCGAT	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	317
BspQI	GCTCTTC	1 cut(s)	491
BspTNI	GGTCTC	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	69, 453
BssMI	GATC	4 cut(s)	49, 163, 309, 373
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	491
BstC8I	GCNNGC	4 cut(s)	277, 281, 424, 466
BstDEI	CTNAG	4 cut(s)	24, 303, 417, 597
BstF5I	GGATG	1 cut(s)	620
BstFNI	CGCG	1 cut(s)	426
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	4 cut(s)	52, 166, 312, 376
BstMAI	GTCTC	2 cut(s)	16, 515
BstMBI	GATC	4 cut(s)	49, 163, 309, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	114, 511
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	3 cut(s)	512, 515, 613
BstV2I	GAAGAC	2 cut(s)	522, 564
Bsu15I	ATCGAT	1 cut(s)	312
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	119
BsuTUI	ATCGAT	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	620
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	4 cut(s)	277, 281, 424, 466
CfoI	GCGC	1 cut(s)	484
ClaI	ATCGAT	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	91, 154
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	8 cut(s)	5, 34, 119, 197, 231, 416, 468, 506
CviKI_1	RGCY	8 cut(s)	5, 34, 119, 197, 231, 416, 468, 506
CviQI	GTAC	2 cut(s)	91, 154
DdeI	CTNAG	4 cut(s)	24, 303, 417, 597
DpnI	GATC	4 cut(s)	51, 165, 311, 375
DpnII	GATC	4 cut(s)	49, 163, 309, 373
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
Eco31I	GGTCTC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	589
FaeI	CATG	1 cut(s)	91
FaiI	YATR	6 cut(s)	30, 89, 234, 267, 347, 551
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	457
Fnu4HI	GCNGC	3 cut(s)	501, 504, 602
Fsp4HI	GCNGC	3 cut(s)	501, 504, 602
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	3 cut(s)	501, 504, 602
GsaI	CCCAGC	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	2 cut(s)	8, 512
HhaI	GCGC	1 cut(s)	484
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HinfI	GANTC	4 cut(s)	84, 210, 217, 242
HpaII	CCGG	2 cut(s)	8, 512
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	176, 228
Hpy188III	TCNNGA	2 cut(s)	214, 609
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	3 cut(s)	275, 581, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	4 cut(s)	24, 303, 417, 597
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	482
Kzo9I	GATC	4 cut(s)	49, 163, 309, 373
LguI	GCTCTTC	1 cut(s)	491
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	3 cut(s)	512, 515, 613
LweI	GCATC	2 cut(s)	596, 605
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	331
MalI	GATC	4 cut(s)	51, 165, 311, 375
MboI	GATC	4 cut(s)	49, 163, 309, 373
MboII	GAAGA	4 cut(s)	173, 478, 522, 564
MfeI	CAATTG	1 cut(s)	123
MluCI	AATT	3 cut(s)	98, 123, 222
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	5 cut(s)	256, 310, 397, 538, 605
Mph1103I	ATGCAT	1 cut(s)	589
MseI	TTAA	2 cut(s)	432, 477
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	2 cut(s)	8, 512
MspR9I	CCNGG	2 cut(s)	116, 513
MunI	CAATTG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	593
NciI	CCSGG	1 cut(s)	513
NdeII	GATC	4 cut(s)	49, 163, 309, 373
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	84, 210, 242
PflFI	GACNNNGTC	1 cut(s)	526
PkrI	GCNGC	3 cut(s)	502, 505, 603
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	6
PsyI	GACNNNGTC	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	92, 155
RsaNI	GTAC	2 cut(s)	91, 154
RseI	CAYNNNNRTG	1 cut(s)	350
SapI	GCTCTTC	1 cut(s)	491
SaqAI	TTAA	2 cut(s)	432, 477
SatI	GCNGC	3 cut(s)	501, 504, 602
Sau3AI	GATC	4 cut(s)	49, 163, 309, 373
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	116, 513
SetI	ASST	8 cut(s)	36, 159, 199, 233, 321, 334, 418, 508
SfaNI	GCATC	2 cut(s)	596, 605
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	3 cut(s)	98, 123, 222
SsiI	CCGC	2 cut(s)	464, 490
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	114, 511
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	5 cut(s)	82, 102, 166, 312, 447
TasI	AATT	3 cut(s)	98, 123, 222
TfiI	GAWTC	3 cut(s)	84, 210, 242
Tru1I	TTAA	2 cut(s)	432, 477
Tru9I	TTAA	2 cut(s)	432, 477
TscAI	CASTG	1 cut(s)	460
TseI	GCWGC	3 cut(s)	500, 503, 601
TspDTI	ATGAA	2 cut(s)	76, 433
TspGWI	ACGGA	2 cut(s)	46, 238
TspRI	CASTG	1 cut(s)	460
Tth111I	GACNNNGTC	1 cut(s)	526
XapI	RAATTY	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XspI	CTAG	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.