Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007646

Physical Location & Seq

Genomic Coordinates Reverse (-)

44705996 .. 44711420

Gene Structure 5425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00250860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGCCGGTGTCAGCTTTGGCCAAGTACAAGCTGGTCTTCCTGGGCGATCAGTCCGTCGGCAAAACCAGTATCATCACTCGCTTCATGTACGATAAATTCGACAACACCTATCAGGCTACCATTGGTATTGATTTTCTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGGCTGCAGTTATGGGATACAGCTGGTCAGGAAAGATTCAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTGTTGCAGTAATTGTTTATGATGTTGCAAGCAGACAATCTTTCCTAAACACTTCAAAGTGGATTGATGAGGTTCGCACTGAGAGGGGAAGTGATGTCATTGTTGTCCTTGTTGGAAACAAAACCGATCTTGCAGACAAGAGGCAAGTTTCTGTAGAGGAAGCAGAAGCCAAGGCTCGCGACCTTAGTGTCATGTTCATCGAAACCAGTGCAAAAGCTGGTTTTAATATCAAGGCACTGTTTAGGAAAATTGCTGCAGCTTTGCCAGGAATGGAAACACTCTCATCAACAAAGCAAGAAGACATGGTTGATGTGAACCTGAGGTCTACTGGTGGCGGTGCATCTCAGTCGCAGGCTGAGTCTGGATGCGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0017076 GO:0019001 GO:0030054 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

207

Amino Acids

22.85

Weight (kDa)

6.38

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 166	3.5e-15	ADP-ribosylation factor family
Ras	PF00071	11 - 169	2.5e-58	Ras family
Roc	PF08477	11 - 125	2.5e-37	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	43 - 171	8.5e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44610
fragaria_vesca	FvH4_5g21020 FvH4_7g08750
malus_domestica	MD02G1225400.v1.1 MD07G1088300.v1.1
prunus_persica	Prupe.2G115200_v2.0.a1 Prupe.2G115200_v2.0.a1 Prupe.2G115200_v2.0.a1
pyrus_communis	pycom07g07090
rosa_chinensis	RchiOBHm_Chr1g0343981 RchiOBHm_Chr7g0208031
rosa_laevigata	RLG00000003260 RLG00000028937
rosa_multiflora	Rmu_sc0002039.1_g000014 Rmu_ssc0000434.1_g000030
rosa_roxburghii	Rroxscaffold_3G00250860 Rroxscaffold_4G00310180
rosa_rugosa	Rorug01G0170500 Rorug07G0101000
rosa_samantha	Rh1BG153300
rosa_wichuraiana	Rw0G014140 Rw0G018040 Rw0G020300 Rw1G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	572
AccII	CGCG	1 cut(s)	426
AciI	CCGC	1 cut(s)	582
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	98
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	29, 92
AgsI	TTSAA	2 cut(s)	161, 303
AjnI	CCWGG	2 cut(s)	42, 511
AluBI	AGCT	6 cut(s)	17, 34, 197, 231, 464, 506
AluI	AGCT	6 cut(s)	17, 34, 197, 231, 464, 506
Alw26I	GTCTC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	3 cut(s)	178, 500, 503
ApoI	RAATTY	1 cut(s)	98
AspLEI	GCGC	2 cut(s)	7, 617
AxyI	CCTNAGG	1 cut(s)	566
BalI	TGGCCA	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	31, 552
BbvI	GCAGC	3 cut(s)	165, 487, 515
BcgI	CGANNNNNNTGC	4 cut(s)	437, 471, 576, 610
BciT130I	CCWGG	2 cut(s)	44, 513
BciVI	GTATCC	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	224
BfmI	CTRYAG	3 cut(s)	179, 399, 501
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	3 cut(s)	179, 501, 504
BlsI	GCNGC	3 cut(s)	180, 502, 505
Bme1390I	CCNGG	2 cut(s)	44, 513
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	44, 513
BmsI	GCATC	2 cut(s)	596, 602
BpiI	GAAGAC	2 cut(s)	31, 552
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	43, 417
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	3 cut(s)	69, 453, 580
Bse21I	CCTNAGG	1 cut(s)	566
BseBI	CCWGG	2 cut(s)	44, 513
BseDI	CCNNGG	2 cut(s)	43, 417
BseGI	GGATG	1 cut(s)	617
BseMII	CTCAG	4 cut(s)	318, 557, 594, 605
BseNI	ACTGG	3 cut(s)	69, 453, 580
BseXI	GCAGC	3 cut(s)	165, 487, 515
Bsh1236I	CGCG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	23
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	49, 163, 373
Bsp68I	TCGCGA	1 cut(s)	426
BspACI	CCGC	1 cut(s)	582
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	4 cut(s)	319, 558, 595, 604
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	2 cut(s)	183, 505
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	3 cut(s)	69, 453, 580
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	2 cut(s)	43, 417
BssMI	GATC	3 cut(s)	49, 163, 373
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	44, 513
Bst4CI	ACNGT	2 cut(s)	172, 486
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	277, 424, 600
BstDEI	CTNAG	5 cut(s)	327, 431, 566, 591, 603
BstF5I	GGATG	1 cut(s)	617
BstFNI	CGCG	1 cut(s)	426
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 617
BstKTI	GATC	3 cut(s)	52, 166, 376
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	3 cut(s)	49, 163, 373
BstNI	CCWGG	2 cut(s)	44, 513
BstSCI	CCNGG	2 cut(s)	42, 511
BstSFI	CTRYAG	3 cut(s)	179, 399, 501
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	3 cut(s)	165, 487, 515
BstV2I	GAAGAC	2 cut(s)	31, 552
Bsu36I	CCTNAGG	1 cut(s)	566
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	617
BtsIMutI	CAGTG	3 cut(s)	324, 460, 482
BtuMI	TCGCGA	1 cut(s)	426
Cac8I	GCNNGC	3 cut(s)	277, 424, 600
CfoI	GCGC	2 cut(s)	7, 617
Cfr10I	RCCGGY	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	28, 91
CviAII	CATG	3 cut(s)	88, 439, 550
CviQI	GTAC	2 cut(s)	28, 91
DdeI	CTNAG	5 cut(s)	327, 431, 566, 591, 603
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	51, 165, 375
DpnII	GATC	3 cut(s)	49, 163, 373
DrdI	GACNNNNNNGTC	1 cut(s)	434
DseDI	GACNNNNNNGTC	1 cut(s)	434
EaeI	YGGCCR	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	566
EcoRII	CCWGG	2 cut(s)	42, 511
EcoT14I	CCWWGG	1 cut(s)	417
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	3 cut(s)	91, 442, 553
FaiI	YATR	6 cut(s)	89, 152, 187, 267, 440, 551
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FatI	CATG	3 cut(s)	87, 438, 549
FblI	GTMKAC	1 cut(s)	572
Fnu4HI	GCNGC	3 cut(s)	179, 501, 504
Fsp4HI	GCNGC	3 cut(s)	179, 501, 504
GlaI	GCGC	2 cut(s)	6, 616
GluI	GCNGC	3 cut(s)	179, 501, 504
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	8
HhaI	GCGC	2 cut(s)	7, 617
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	91, 442, 553
Hin6I	GCGC	2 cut(s)	5, 615
HinP1I	GCGC	2 cut(s)	5, 615
HinfI	GANTC	3 cut(s)	210, 242, 605
HpaII	CCGG	1 cut(s)	8
Hpy166II	GTNNAC	2 cut(s)	562, 573
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	4 cut(s)	158, 203, 425, 609
Hpy8I	GTNNAC	2 cut(s)	562, 573
Hpy99I	CGWCG	1 cut(s)	62
HpyCH4III	ACNGT	2 cut(s)	172, 486
HpyCH4V	TGCA	7 cut(s)	181, 254, 275, 380, 458, 503, 587
HpyF3I	CTNAG	5 cut(s)	327, 431, 566, 591, 603
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	91, 442, 553
HspAI	GCGC	2 cut(s)	5, 615
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	3 cut(s)	49, 163, 373
Lsp1109I	GCAGC	3 cut(s)	165, 487, 515
LweI	GCATC	2 cut(s)	596, 602
MalI	GATC	3 cut(s)	51, 165, 375
MboI	GATC	3 cut(s)	49, 163, 373
MboII	GAAGA	4 cut(s)	31, 173, 237, 557
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	3 cut(s)	98, 258, 495
MluNI	TGGCCA	1 cut(s)	23
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	5 cut(s)	310, 324, 381, 397, 561
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	1 cut(s)	471
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	2 cut(s)	44, 513
MvaI	CCWGG	2 cut(s)	44, 513
MvnI	CGCG	1 cut(s)	426
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	3 cut(s)	49, 163, 373
NlaIII	CATG	3 cut(s)	91, 442, 553
NlaIV	GGNNCC	1 cut(s)	6
NruI	TCGCGA	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	210, 242
PkrI	GCNGC	3 cut(s)	180, 502, 505
PleI	GAGTC	1 cut(s)	613
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	613
Psp6I	CCWGG	2 cut(s)	42, 511
PspGI	CCWGG	2 cut(s)	42, 511
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	2 cut(s)	183, 505
PvuII	CAGCTG	1 cut(s)	197
RruI	TCGCGA	1 cut(s)	426
RsaI	GTAC	2 cut(s)	29, 92
RsaNI	GTAC	2 cut(s)	28, 91
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	3 cut(s)	179, 501, 504
Sau3AI	GATC	3 cut(s)	49, 163, 373
SchI	GAGTC	1 cut(s)	614
ScrFI	CCNGG	2 cut(s)	44, 513
SfaNI	GCATC	2 cut(s)	596, 602
SfcI	CTRYAG	3 cut(s)	179, 399, 501
SfoI	GGCGCC	1 cut(s)	6
SgrAI	CRCCGGYG	1 cut(s)	7
Sse9I	AATT	3 cut(s)	98, 258, 495
SsiI	CCGC	1 cut(s)	582
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	2 cut(s)	42, 511
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	172, 486
TaqI	TCGA	3 cut(s)	102, 166, 447
TasI	AATT	3 cut(s)	98, 258, 495
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	210, 242
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	3 cut(s)	331, 460, 489
TseI	GCWGC	3 cut(s)	178, 500, 503
TspDTI	ATGAA	2 cut(s)	76, 433
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	3 cut(s)	331, 460, 489
XapI	RAATTY	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.