Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007646

Physical Location & Seq

Genomic Coordinates Reverse (-)

8563068 .. 8568291

Gene Structure 5224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTCCCGTCTCCGCTCTCGCCAAGTACAAGCTCGTCTTCCTCGGCGACCAGTCCGTCGGCAAAACCAGCATCATCACTCGCTTCATGTACGACAAGTTCGACAACACCTATCAGGCTACCATCGGCATTGATTTTCTGTCAAAGACAATGTACCTTGAAGATCGAACTGTTCGATTGCAGCTCTGGGATACTGCTGGGCAGGAAAGATTCAGGAGTCTGATTCCAAGTTATATCCGGGATTCCTCTGTGGCGGTCATTGTATATGATGTTGCCAGCAGGCAGTCATTCCTAAACACTTCCAAGTGGATTGAAGAGGTTCGCACTGAGCGGGGAAGTGATGTCATCATTGTACTTGTTGGAAACAAAACAGATCTTGTAGATAAAAGGCAAGTTTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAAATGAATGTTATGTTCATCGAAACCAGTGCCAAGGCTGGTTTCAATATCAAGGCACTCTTTCGGAAGATTGCAGCAGCCCTACCTGGAATGGAGACACTTTCTTCTACAAAGCAAGAGGATATGGTTGATGTAAACCTCAAGTCCTCCAATCCAAATGCTTCACAGTCACAGGGACAGTCCGGAGGGTGCGCATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

209

Amino Acids

23.12

Weight (kDa)

7.67

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 167	3.5e-15	ADP-ribosylation factor family
Ras	PF00071	11 - 169	5.1e-59	Ras family
Roc	PF08477	11 - 125	1.4e-37	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	43 - 171	4e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44610
fragaria_vesca	FvH4_5g21020 FvH4_7g08750
malus_domestica	MD02G1225400.v1.1 MD07G1088300.v1.1
prunus_persica	Prupe.2G115200_v2.0.a1 Prupe.2G115200_v2.0.a1 Prupe.2G115200_v2.0.a1
pyrus_communis	pycom07g07090
rosa_chinensis	RchiOBHm_Chr1g0343981 RchiOBHm_Chr7g0208031
rosa_laevigata	RLG00000003260 RLG00000028937
rosa_multiflora	Rmu_sc0002039.1_g000014 Rmu_ssc0000434.1_g000030
rosa_roxburghii	Rroxscaffold_3G00250860 Rroxscaffold_4G00310180
rosa_rugosa	Rorug01G0170500 Rorug07G0101000
rosa_samantha	Rh1BG153300
rosa_wichuraiana	Rw0G014140 Rw0G018040 Rw0G020300 Rw1G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
Acc16I	TGCGCA	1 cut(s)	619
AccBSI	CCGCTC	2 cut(s)	17, 331
AccIII	TCCGGA	1 cut(s)	608
AciI	CCGC	3 cut(s)	15, 254, 331
AfaI	GTAC	4 cut(s)	29, 92, 155, 354
AgsI	TTSAA	4 cut(s)	161, 314, 399, 472
AjnI	CCWGG	1 cut(s)	511
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	3 cut(s)	34, 184, 422
AluI	AGCT	3 cut(s)	34, 184, 422
Alw26I	GTCTC	2 cut(s)	16, 515
Aor13HI	TCCGGA	1 cut(s)	608
ApeKI	GCWGC	3 cut(s)	181, 500, 503
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	620
AsuC2I	CCSGG	1 cut(s)	239
BauI	CACGAG	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	3 cut(s)	193, 512, 515
BccI	CCATC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	1 cut(s)	513
BciVI	GTATCC	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	16, 515
BfaI	CTAG	1 cut(s)	625
BfuI	GTATCC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	3 cut(s)	182, 501, 504
BlsI	GCNGC	3 cut(s)	183, 502, 505
Bme1390I	CCNGG	2 cut(s)	239, 513
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	239, 513
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	43, 459
BsaWI	WCCGGW	1 cut(s)	608
Bse1I	ACTGG	2 cut(s)	52, 453
BseAI	TCCGGA	1 cut(s)	608
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	2 cut(s)	43, 459
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	52, 453
BseXI	GCAGC	3 cut(s)	193, 512, 515
BseYI	CCCAGC	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	238, 609
BslFI	GGGAC	1 cut(s)	615
BsmAI	GTCTC	2 cut(s)	16, 515
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	615
Bsp13I	TCCGGA	1 cut(s)	608
Bsp143I	GATC	2 cut(s)	163, 373
BspACI	CCGC	3 cut(s)	15, 254, 331
BspCNI	CTCAG	1 cut(s)	319
BspEI	TCCGGA	1 cut(s)	608
BspLI	GGNNCC	1 cut(s)	6
BsrBI	CCGCTC	2 cut(s)	17, 331
BsrI	ACTGG	2 cut(s)	52, 453
BssECI	CCNNGG	2 cut(s)	43, 459
BssMI	GATC	2 cut(s)	163, 373
BssSI	CACGAG	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	3 cut(s)	172, 594, 606
Bst6I	CTCTTC	1 cut(s)	309
BstC8I	GCNNGC	3 cut(s)	277, 281, 622
BstDEI	CTNAG	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	620
BstKTI	GATC	2 cut(s)	166, 376
BstMAI	GTCTC	2 cut(s)	16, 515
BstMBI	GATC	2 cut(s)	163, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	1 cut(s)	624
BstSCI	CCNGG	2 cut(s)	237, 511
BstV1I	GCAGC	3 cut(s)	193, 512, 515
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuI	GTATCC	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	324, 460
Cac8I	GCNNGC	3 cut(s)	277, 281, 622
CfoI	GCGC	1 cut(s)	620
Csp6I	GTAC	4 cut(s)	28, 91, 154, 353
CviAII	CATG	2 cut(s)	88, 621
CviJI	RGCY	8 cut(s)	5, 34, 119, 184, 416, 422, 464, 506
CviKI_1	RGCY	8 cut(s)	5, 34, 119, 184, 416, 422, 464, 506
CviQI	GTAC	4 cut(s)	28, 91, 154, 353
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	2 cut(s)	165, 375
DpnII	GATC	2 cut(s)	163, 373
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	2 cut(s)	91, 624
FaiI	YATR	7 cut(s)	89, 234, 265, 267, 440, 551, 622
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 470, 502
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	2 cut(s)	87, 620
FauI	CCCGC	1 cut(s)	324
Fnu4HI	GCNGC	3 cut(s)	182, 501, 504
Fsp4HI	GCNGC	3 cut(s)	182, 501, 504
FspAI	RTGCGCAY	1 cut(s)	619
FspBI	CTAG	1 cut(s)	625
FspI	TGCGCA	1 cut(s)	619
GlaI	GCGC	1 cut(s)	619
GluI	GCNGC	3 cut(s)	182, 501, 504
GsaI	CCCAGC	1 cut(s)	201
HapII	CCGG	2 cut(s)	238, 609
HhaI	GCGC	1 cut(s)	620
Hin1II	CATG	2 cut(s)	91, 624
Hin6I	GCGC	1 cut(s)	618
HinP1I	GCGC	1 cut(s)	618
HinfI	GANTC	4 cut(s)	210, 217, 223, 242
HpaII	CCGG	2 cut(s)	238, 609
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	2 cut(s)	222, 492
Hpy188III	TCNNGA	3 cut(s)	214, 425, 609
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	3 cut(s)	172, 594, 606
HpyCH4V	TGCA	2 cut(s)	181, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	91, 624
HspAI	GCGC	1 cut(s)	618
Kpn2I	TCCGGA	1 cut(s)	608
Kzo9I	GATC	2 cut(s)	163, 373
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	3 cut(s)	193, 512, 515
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	625
MaeIII	GTNAC	1 cut(s)	594
MalI	GATC	2 cut(s)	165, 375
MbiI	CCGCTC	2 cut(s)	17, 331
MboI	GATC	2 cut(s)	163, 373
MboII	GAAGA	5 cut(s)	31, 173, 326, 505, 522
MflI	RGATCY	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	8 cut(s)	53, 256, 310, 397, 538, 575, 583, 605
MroI	TCCGGA	1 cut(s)	608
MroXI	GAANNNNTTC	1 cut(s)	318
MspI	CCGG	2 cut(s)	238, 609
MspR9I	CCNGG	2 cut(s)	239, 513
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	2 cut(s)	163, 373
NlaIII	CATG	2 cut(s)	91, 624
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	594
NsbI	TGCGCA	1 cut(s)	619
NspI	RCATGY	1 cut(s)	624
PaeI	GCATGC	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 172
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	3 cut(s)	210, 223, 242
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	3 cut(s)	183, 502, 505
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	511
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	6
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	4 cut(s)	29, 92, 155, 354
RsaNI	GTAC	4 cut(s)	28, 91, 154, 353
SatI	GCNGC	3 cut(s)	182, 501, 504
Sau3AI	GATC	2 cut(s)	163, 373
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	239, 513
SetI	ASST	8 cut(s)	36, 113, 159, 186, 321, 424, 514, 567
SfaNI	GCATC	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
SphI	GCATGC	1 cut(s)	624
SsiI	CCGC	3 cut(s)	15, 254, 331
SspMI	CTAG	1 cut(s)	625
StyD4I	CCNGG	2 cut(s)	237, 511
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	3 cut(s)	172, 594, 606
TaqI	TCGA	4 cut(s)	102, 166, 175, 447
TatI	WGTACW	2 cut(s)	27, 352
TfiI	GAWTC	3 cut(s)	210, 223, 242
TscAI	CASTG	2 cut(s)	331, 460
TseFI	GTSAC	1 cut(s)	594
TseI	GCWGC	3 cut(s)	181, 500, 503
Tsp45I	GTSAC	1 cut(s)	594
TspDTI	ATGAA	3 cut(s)	76, 433, 446
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	2 cut(s)	331, 460
XceI	RCATGY	1 cut(s)	624
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.