Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007646

Physical Location & Seq

Genomic Coordinates Reverse (-)

17294380 .. 17298790

Gene Structure 4411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G115200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTCCCGTTTCGGCTCTCGCCAAGTACAAGCTCGTCTTCTTGGGGGACCAGTCCGTCGGCAAAACCAGCATCATCACTCGCTTCATGTACGACAAGTTCGACAACACGTATCAGGCTACCATCGGCATTGATTTTCTGTCAAAGACAATGTACCTTGAAGATCGAACTGTTCGATTGCAGCTCTGGGATACTGCTGGGCAGGAAAGGTTCAGGAGTCTCATTCCAAGCTATATCAGGGATTCCTCTGTGGCAGTCATTGTATATGATGTTGCAAGCAGGCAATCATTCCTAAACACTTCCAAGTGGATTGAAGAGGTTCGCACTGAGCGGGGAAGTGATGTTATCATTGTACTTGTTGGAAACAAAACAGATCTTGTAGACAAAAGGCAAGTTTCCATAGAGGAAGGAGAAGCCAAAGCTCGTGAGCTCAATGTTATGTTCATCGAAACTAGTGCCAAGGCTGGCTTTAATATCAAGGCACTGTTCCGAAAGATAGCAGCCGCCTTGCCTGGAATGGAAACACTTTCTTCAACGAAGCAAGAGGATATGGTTGATGTGAACCTCAAGTCATCCAATGCAAATTCATCAGAGTCACAGGCACAGTCGGGCGGATGTGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

209

Amino Acids

23.11

Weight (kDa)

6.39

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44610
fragaria_vesca	FvH4_5g21020 FvH4_7g08750
malus_domestica	MD02G1225400.v1.1 MD07G1088300.v1.1
prunus_persica	Prupe.2G115200_v2.0.a1 Prupe.2G115200_v2.0.a1 Prupe.2G115200_v2.0.a1
pyrus_communis	pycom07g07090
rosa_chinensis	RchiOBHm_Chr1g0343981 RchiOBHm_Chr7g0208031
rosa_laevigata	RLG00000003260 RLG00000028937
rosa_multiflora	Rmu_sc0002039.1_g000014 Rmu_ssc0000434.1_g000030
rosa_roxburghii	Rroxscaffold_3G00250860 Rroxscaffold_4G00310180
rosa_rugosa	Rorug01G0170500 Rorug07G0101000
rosa_samantha	Rh1BG153300
rosa_wichuraiana	Rw0G014140 Rw0G018040 Rw0G020300 Rw1G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	381
AciI	CCGC	3 cut(s)	331, 504, 612
AcsI	RAATTY	1 cut(s)	583
AfaI	GTAC	4 cut(s)	29, 92, 155, 354
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	3 cut(s)	161, 314, 534
AhlI	ACTAGT	1 cut(s)	452
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	5 cut(s)	34, 184, 231, 422, 430
AluI	AGCT	5 cut(s)	34, 184, 231, 422, 430
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	1 cut(s)	224
ApeKI	GCWGC	2 cut(s)	181, 500
ApoI	RAATTY	1 cut(s)	583
Asp700I	GAANNNNTTC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	432
BauI	CACGAG	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	193, 512
BccI	CCATC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	1 cut(s)	513
BciVI	GTATCC	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	224
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	1 cut(s)	453
BfuI	GTATCC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	3 cut(s)	182, 501, 504
BlsI	GCNGC	3 cut(s)	183, 502, 505
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	2 cut(s)	6, 50
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	551
BsaAI	YACGTR	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	459
Bse1I	ACTGG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	2 cut(s)	572, 620
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	2 cut(s)	193, 512
BseYI	CCCAGC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	163, 373
BspACI	CCGC	3 cut(s)	331, 504, 612
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	6, 50
BsrBI	CCGCTC	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	2 cut(s)	163, 373
BssSI	CACGAG	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	3 cut(s)	172, 486, 606
Bst6I	CTCTTC	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	277, 281, 466
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	2 cut(s)	572, 620
BstKTI	GATC	2 cut(s)	166, 376
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	2 cut(s)	163, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstV1I	GCAGC	2 cut(s)	193, 512
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuI	GTATCC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	572, 620
BtsIMutI	CAGTG	2 cut(s)	324, 482
Cac8I	GCNNGC	3 cut(s)	277, 281, 466
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	4 cut(s)	28, 91, 154, 353
CviAII	CATG	1 cut(s)	88
CviQI	GTAC	4 cut(s)	28, 91, 154, 353
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	2 cut(s)	165, 375
DpnII	GATC	2 cut(s)	163, 373
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	627
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	430
EcoICRI	GAGCTC	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	1 cut(s)	91
FaiI	YATR	7 cut(s)	89, 234, 265, 267, 401, 440, 551
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 452, 484
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	324
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	3 cut(s)	182, 501, 504
FokI	GGATG	1 cut(s)	559
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	3 cut(s)	182, 501, 504
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	3 cut(s)	182, 501, 504
GsaI	CCCAGC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	3 cut(s)	217, 242, 593
Hpy166II	GTNNAC	2 cut(s)	382, 562
Hpy188I	TCNGA	2 cut(s)	491, 592
Hpy188III	TCNNGA	2 cut(s)	214, 425
Hpy8I	GTNNAC	2 cut(s)	382, 562
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	3 cut(s)	172, 486, 606
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	3 cut(s)	181, 275, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	163, 373
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	2 cut(s)	193, 512
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	594
MalI	GATC	2 cut(s)	165, 375
MbiI	CCGCTC	1 cut(s)	331
MboI	GATC	2 cut(s)	163, 373
MboII	GAAGA	4 cut(s)	31, 173, 326, 522
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	1 cut(s)	583
MlyI	GAGTC	2 cut(s)	226, 602
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	5 cut(s)	256, 310, 397, 538, 575
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	2 cut(s)	471, 625
MspR9I	CCNGG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeII	GATC	2 cut(s)	163, 373
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	6, 50
NmuCI	GTSAC	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 172
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	183, 502, 505
PleI	GAGTC	2 cut(s)	225, 601
PpsI	GAGTC	2 cut(s)	225, 601
Ppu21I	YACGTR	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	511
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	2 cut(s)	6, 50
PspPI	GGNCC	1 cut(s)	49
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	4 cut(s)	29, 92, 155, 354
RsaNI	GTAC	4 cut(s)	28, 91, 154, 353
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	471, 625
SatI	GCNGC	3 cut(s)	182, 501, 504
Sau3AI	GATC	2 cut(s)	163, 373
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	2 cut(s)	226, 602
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	1 cut(s)	81
SinI	GGWCC	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
SpeI	ACTAGT	1 cut(s)	452
Sse9I	AATT	1 cut(s)	583
SsiI	CCGC	3 cut(s)	331, 504, 612
SspMI	CTAG	1 cut(s)	453
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	3 cut(s)	172, 486, 606
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	4 cut(s)	102, 166, 175, 447
TasI	AATT	1 cut(s)	583
TatI	WGTACW	2 cut(s)	27, 352
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	2 cut(s)	471, 625
Tru9I	TTAA	2 cut(s)	471, 625
TscAI	CASTG	2 cut(s)	331, 489
TseFI	GTSAC	1 cut(s)	594
TseI	GCWGC	2 cut(s)	181, 500
Tsp45I	GTSAC	1 cut(s)	594
TspDTI	ATGAA	3 cut(s)	76, 433, 576
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	2 cut(s)	331, 489
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	583
XmiI	GTMKAC	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.