Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007646

Physical Location & Seq

Genomic Coordinates Reverse (-)

7993718 .. 7994388

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0101000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGCGGATTGGGGCCCGGTGATCGTAGCGGTGGTGCTGTTTGTGCTGTTGACTCCAGGGCTTTTGTTTCAGATACCGGGAAGGGGGAGAGTGGTGGAGTTTGGGAACATGCAGACCAGTGGTGCCTCCATTGTCGTACATGCGATCATTTACTTTGGGCTTCTTACCATTTTCCTTATCGCCATCGGTGTTCATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0017076 GO:0019001 GO:0030054 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

66

Amino Acids

7.06

Weight (kDa)

6.7

Isoelectric Point (pI)

10.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3339	PF11820	1 - 66	3.4e-36	Protein of unknown function (DUF3339)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44610
fragaria_vesca	FvH4_5g21020 FvH4_7g08750
malus_domestica	MD02G1225400.v1.1 MD07G1088300.v1.1
prunus_persica	Prupe.2G115200_v2.0.a1 Prupe.2G115200_v2.0.a1 Prupe.2G115200_v2.0.a1
pyrus_communis	pycom07g07090
rosa_chinensis	RchiOBHm_Chr1g0343981 RchiOBHm_Chr7g0208031
rosa_laevigata	RLG00000003260 RLG00000028937
rosa_multiflora	Rmu_sc0002039.1_g000014 Rmu_ssc0000434.1_g000030
rosa_roxburghii	Rroxscaffold_3G00250860 Rroxscaffold_4G00310180
rosa_rugosa	Rorug01G0170500 Rorug07G0101000
rosa_samantha	Rh1BG153300
rosa_wichuraiana	Rw0G014140 Rw0G018040 Rw0G020300 Rw1G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AciI	CCGC	2 cut(s)	5, 29
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	55
AoxI	GGCC	1 cut(s)	13
ApaI	GGGCCC	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	13, 14
AsuC2I	CCSGG	2 cut(s)	17, 78
AsuHPI	GGTGA	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	17
BccI	CCATC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	57
BcnI	CCSGG	2 cut(s)	17, 78
Bme1390I	CCNGG	3 cut(s)	17, 57, 78
BmgT120I	GGNCC	2 cut(s)	13, 14
BmiI	GGNNCC	3 cut(s)	14, 15, 124
BmrFI	CCNGG	3 cut(s)	17, 57, 78
BpmI	CTGGAG	1 cut(s)	39
BpuMI	CCSGG	2 cut(s)	17, 78
BsaJI	CCNNGG	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	117
BseSI	GKGCMC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	15
BshNI	GGYRCC	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	17, 77
BslI	CCNNNNNNNGG	1 cut(s)	83
BsnI	GGCC	1 cut(s)	15
Bsp120I	GGGCCC	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	21, 144
BspACI	CCGC	2 cut(s)	5, 29
BspANI	GGCC	1 cut(s)	15
BspLI	GGNNCC	3 cut(s)	14, 15, 124
BspT107I	GGYRCC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	2 cut(s)	21, 144
Bst2UI	CCWGG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	24, 147
BstMBI	GATC	2 cut(s)	21, 144
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	2 cut(s)	112, 143
BstSCI	CCNGG	3 cut(s)	15, 55, 76
BstSLI	GKGCMC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	13, 14
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	2 cut(s)	109, 140
CviJI	RGCY	3 cut(s)	15, 61, 160
CviKI_1	RGCY	3 cut(s)	15, 61, 160
CviQI	GTAC	1 cut(s)	137
DpnI	GATC	2 cut(s)	23, 146
DpnII	GATC	2 cut(s)	21, 144
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	2 cut(s)	112, 143
FaiI	YATR	3 cut(s)	110, 141, 195
FatI	CATG	2 cut(s)	108, 139
FriOI	GRGCYC	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	2 cut(s)	17, 77
Hin1II	CATG	2 cut(s)	112, 143
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	2 cut(s)	17, 77
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	72, 200
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
Hsp92II	CATG	2 cut(s)	112, 143
Kzo9I	GATC	2 cut(s)	21, 144
LpnPI	CCDG	5 cut(s)	30, 42, 69, 90, 130
MalI	GATC	2 cut(s)	23, 146
MboI	GATC	2 cut(s)	21, 144
MhlI	GDGCHC	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	1 cut(s)	136
MspI	CCGG	2 cut(s)	17, 77
MspR9I	CCNGG	3 cut(s)	17, 57, 78
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	43
NciI	CCSGG	2 cut(s)	17, 78
NdeII	GATC	2 cut(s)	21, 144
NlaIII	CATG	2 cut(s)	112, 143
NlaIV	GGNNCC	3 cut(s)	14, 15, 124
NspI	RCATGY	2 cut(s)	112, 143
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	3 cut(s)	14, 15, 124
PspOMI	GGGCCC	1 cut(s)	13
PspPI	GGNCC	2 cut(s)	13, 14
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
Sau3AI	GATC	2 cut(s)	21, 144
Sau96I	GGNCC	2 cut(s)	13, 14
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	3 cut(s)	17, 57, 78
SduI	GDGCHC	1 cut(s)	17
SgeI	CNNG	9 cut(s)	28, 29, 68, 69, 89, 90, 121, 129, 152
SsiI	CCGC	2 cut(s)	5, 29
StyD4I	CCNGG	3 cut(s)	15, 55, 76
TscAI	CASTG	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	182
TspRI	CASTG	1 cut(s)	124
XceI	RCATGY	2 cut(s)	112, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.