Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007646

Physical Location & Seq

Genomic Coordinates Reverse (-)

9226271 .. 9229452

Gene Structure 3182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1088300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTCCCGTTTCGGCTCTCGCCAAGTACAAGCTCGTCTTCCTGGGGGACCAGTCCGTCGGTAAAACCAGCATCATCACTCGCTTCATGTACGACAAGTTCGACAACACCTATCAGGCTACCATCGGCATTGATTTTCTGTCAAAGACAATGTATCTTGAAGATCGAACTGTTCGGTTGCAGCTCTGGGATACTGCTGGGCAGGAAAGGTTCAGGAGTCTCATTCCTAGCTACATCAGGGATTCCTCTGTGGCTGTCATTGTATATGATGTTGCAAGCAGACAATCATTCTTAAACACTTCCAAGTGGATTGAAGAGGTTCGCACTGAGCGGGGAAGTGATGTTATCATTGTACTTGTTGGAAACAAAACAGATCTTGTAGACAAAAGGCAAGTTTCCATAGAGGAAGGAGAAGCCAAAGCTCGTGACCTCAATGTTATGTTTATCGAGACCAGTGCCAAGGCTGGCTTCAATATCAAGGCACTGTTTCGGAAGATTGCGGCAGCTTTACCAGGAATGGAAACACTTTCTTCAACGAAGCAAGAGGACATGGTTGATGTGAACCTGAAGTCTTCGAACGCAAATTCATCACAGTCGCAGGCACAGTCAGGCGGATGCGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

209

Amino Acids

23.09

Weight (kDa)

7.67

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 167	4.7e-15	ADP-ribosylation factor family
Ras	PF00071	11 - 169	1.1e-58	Ras family
Roc	PF08477	11 - 125	1.4e-37	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	43 - 171	6.4e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44610
fragaria_vesca	FvH4_5g21020 FvH4_7g08750
malus_domestica	MD02G1225400.v1.1 MD07G1088300.v1.1
prunus_persica	Prupe.2G115200_v2.0.a1 Prupe.2G115200_v2.0.a1 Prupe.2G115200_v2.0.a1
pyrus_communis	pycom07g07090
rosa_chinensis	RchiOBHm_Chr1g0343981 RchiOBHm_Chr7g0208031
rosa_laevigata	RLG00000003260 RLG00000028937
rosa_multiflora	Rmu_sc0002039.1_g000014 Rmu_ssc0000434.1_g000030
rosa_roxburghii	Rroxscaffold_3G00250860 Rroxscaffold_4G00310180
rosa_rugosa	Rorug01G0170500 Rorug07G0101000
rosa_samantha	Rh1BG153300
rosa_wichuraiana	Rw0G014140 Rw0G018040 Rw0G020300 Rw1G015420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	381
AciI	CCGC	3 cut(s)	331, 500, 612
AcsI	RAATTY	1 cut(s)	583
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	3 cut(s)	29, 92, 354
AgsI	TTSAA	4 cut(s)	161, 314, 472, 534
AjnI	CCWGG	2 cut(s)	42, 511
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	5 cut(s)	34, 184, 231, 422, 506
AluI	AGCT	5 cut(s)	34, 184, 231, 422, 506
Alw26I	GTCTC	2 cut(s)	224, 443
ApeKI	GCWGC	2 cut(s)	181, 503
ApoI	RAATTY	1 cut(s)	583
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	620
AspS9I	GGNCC	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	575
AvaII	GGWCC	1 cut(s)	49
BauI	CACGAG	1 cut(s)	423
BbsI	GAAGAC	2 cut(s)	31, 564
BbvI	GCAGC	2 cut(s)	193, 515
BccI	CCATC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	2 cut(s)	44, 513
BciVI	GTATCC	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	224, 443
BfaI	CTAG	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	3 cut(s)	182, 501, 504
BlsI	GCNGC	3 cut(s)	183, 502, 505
Bme1390I	CCNGG	2 cut(s)	44, 513
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	2 cut(s)	6, 50
BmrFI	CCNGG	2 cut(s)	44, 513
BmsI	GCATC	2 cut(s)	81, 605
BpiI	GAAGAC	2 cut(s)	31, 564
Bpu14I	TTCGAA	1 cut(s)	575
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	2 cut(s)	43, 459
Bse1I	ACTGG	2 cut(s)	52, 453
BseBI	CCWGG	2 cut(s)	44, 513
BseDI	CCNNGG	2 cut(s)	43, 459
BseGI	GGATG	1 cut(s)	620
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	52, 453
BseXI	GCAGC	2 cut(s)	193, 515
BseYI	CCCAGC	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	62
BsmAI	GTCTC	2 cut(s)	224, 443
BsmFI	GGGAC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	443
Bsp119I	TTCGAA	1 cut(s)	575
Bsp143I	GATC	2 cut(s)	163, 373
BspACI	CCGC	3 cut(s)	331, 500, 612
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	6, 50
BspT104I	TTCGAA	1 cut(s)	575
BspTNI	GGTCTC	1 cut(s)	443
BsrBI	CCGCTC	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	52, 453
BssECI	CCNNGG	2 cut(s)	43, 459
BssMI	GATC	2 cut(s)	163, 373
BssSI	CACGAG	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	2 cut(s)	44, 513
Bst4CI	ACNGT	4 cut(s)	172, 486, 594, 606
Bst6I	CTCTTC	1 cut(s)	309
BstBI	TTCGAA	1 cut(s)	575
BstC8I	GCNNGC	3 cut(s)	277, 466, 600
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	620
BstHHI	GCGC	1 cut(s)	620
BstKTI	GATC	2 cut(s)	166, 376
BstMAI	GTCTC	2 cut(s)	224, 443
BstMBI	GATC	2 cut(s)	163, 373
BstNI	CCWGG	2 cut(s)	44, 513
BstSCI	CCNGG	2 cut(s)	42, 511
BstV1I	GCAGC	2 cut(s)	193, 515
BstV2I	GAAGAC	2 cut(s)	31, 564
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuI	GTATCC	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	620
BtsIMutI	CAGTG	3 cut(s)	324, 460, 482
Cac8I	GCNNGC	3 cut(s)	277, 466, 600
CfoI	GCGC	1 cut(s)	620
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	3 cut(s)	28, 91, 353
CviAII	CATG	2 cut(s)	88, 550
CviQI	GTAC	3 cut(s)	28, 91, 353
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	2 cut(s)	165, 375
DpnII	GATC	2 cut(s)	163, 373
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	627
Eco130I	CCWWGG	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	42, 511
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	2 cut(s)	91, 553
FaiI	YATR	6 cut(s)	89, 265, 267, 401, 440, 551
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 452, 484
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	2 cut(s)	87, 549
FauI	CCCGC	1 cut(s)	324
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	3 cut(s)	182, 501, 504
Fsp4HI	GCNGC	3 cut(s)	182, 501, 504
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	619
GluI	GCNGC	3 cut(s)	182, 501, 504
GsaI	CCCAGC	1 cut(s)	201
HhaI	GCGC	1 cut(s)	620
Hin1II	CATG	2 cut(s)	91, 553
Hin6I	GCGC	1 cut(s)	618
HinP1I	GCGC	1 cut(s)	618
HinfI	GANTC	2 cut(s)	217, 242
Hpy166II	GTNNAC	2 cut(s)	382, 562
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	4 cut(s)	158, 214, 425, 448
Hpy8I	GTNNAC	2 cut(s)	382, 562
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	4 cut(s)	172, 486, 594, 606
HpyCH4V	TGCA	2 cut(s)	181, 275
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	91, 553
HspAI	GCGC	1 cut(s)	618
Kzo9I	GATC	2 cut(s)	163, 373
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	2 cut(s)	193, 515
LweI	GCATC	2 cut(s)	81, 605
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	2 cut(s)	165, 375
MbiI	CCGCTC	1 cut(s)	331
MboI	GATC	2 cut(s)	163, 373
MboII	GAAGA	6 cut(s)	31, 173, 326, 505, 522, 564
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	1 cut(s)	583
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	5 cut(s)	256, 310, 397, 440, 538
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	2 cut(s)	293, 625
MspR9I	CCNGG	2 cut(s)	44, 513
MvaI	CCWGG	2 cut(s)	44, 513
NdeII	GATC	2 cut(s)	163, 373
NlaIII	CATG	2 cut(s)	91, 553
NlaIV	GGNNCC	2 cut(s)	6, 50
NmuCI	GTSAC	1 cut(s)	425
NspV	TTCGAA	1 cut(s)	575
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	183, 502, 505
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	42, 511
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	2 cut(s)	42, 511
PspN4I	GGNNCC	2 cut(s)	6, 50
PspPI	GGNCC	1 cut(s)	49
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	3 cut(s)	29, 92, 354
RsaNI	GTAC	3 cut(s)	28, 91, 353
SaqAI	TTAA	2 cut(s)	293, 625
SatI	GCNGC	3 cut(s)	182, 501, 504
Sau3AI	GATC	2 cut(s)	163, 373
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	44, 513
SfaNI	GCATC	2 cut(s)	81, 605
SfuI	TTCGAA	1 cut(s)	575
SinI	GGWCC	1 cut(s)	49
Sse9I	AATT	1 cut(s)	583
SsiI	CCGC	3 cut(s)	331, 500, 612
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	42, 511
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	4 cut(s)	172, 486, 594, 606
TaqI	TCGA	4 cut(s)	102, 166, 447, 575
TasI	AATT	1 cut(s)	583
TatI	WGTACW	2 cut(s)	27, 352
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	2 cut(s)	293, 625
Tru9I	TTAA	2 cut(s)	293, 625
TscAI	CASTG	3 cut(s)	331, 460, 489
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	2 cut(s)	181, 503
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	2 cut(s)	76, 576
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	3 cut(s)	331, 460, 489
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	583
XmiI	GTMKAC	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.