AT2G44670

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013226
Physical Location & Seq
Forward (+)
18425111 .. 18426121
1011 bp
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UTR
Exon/CDS
Intron
AT2G44670.1

Sequence Viewer

Length: 282 bp
ATGGCTTCGTATTACTCTGGTTTTTTGGGTTGTGAAGAGCCACACTTTTTGGAATCGTGTTCTCTTTGCCGGAAACACCTTGGTCTTAACTCCGATATCTTCATGTACAGAGGAGACAAGGCTTTTTGTAGCAACGAGTGTAGAGAAGAACAGATTGAATCTGATGAAGCTAAGGAGAGAAAGTGGAAAAAATCTTCAAGATCTCTCCGGAAAAATTCTTCTGAAACTAAAGAATCCGCCGCCGGAAACACCGTACGGACAGGAACTCTCGTCGTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

93

Amino Acids

10.52

Weight (kDa)

7.62

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 12 - 58 6e-24 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44670
fragaria_vesca FvH4_7g08920
malus_domestica MD02G1222600.v1.1 MD07G1092800.v1.1
prunus_persica Prupe.2G118400_v2.0.a1 Prupe.2G118400_v2.0.a1
pyrus_communis pycom02g18900 pycom07g07620
rosa_chinensis RchiOBHm_Chr1g0344361
rosa_laevigata RLG00000028905
rosa_multiflora Rmu_sc0024072.1_g000002
rosa_roxburghii Rroxscaffold_4G00309840
rosa_rugosa Rorug01G0173200
rosa_samantha Rh1AG189600 Rh1BG156300 Rh1CG175300 Rh1DG187900
rosa_wichuraiana Rw1G015620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 207
AciI CCGC 2 cut(s) 237, 240
AcsI RAATTY 1 cut(s) 214
AfaI GTAC 2 cut(s) 107, 255
AgsI TTSAA 2 cut(s) 158, 198
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 108
Aor13HI TCCGGA 1 cut(s) 207
ApoI RAATTY 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 108
BglII AGATCT 1 cut(s) 200
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bpu10I CCTNAGC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 79
BsaWI WCCGGW 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
BseAI TCCGGA 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 126
BsiSI CCGG 3 cut(s) 70, 208, 243
BsiWI CGTACG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 108
Bsp13I TCCGGA 1 cut(s) 207
Bsp1407I TGTACA 1 cut(s) 105
Bsp143I GATC 1 cut(s) 200
BspACI CCGC 2 cut(s) 237, 240
BspEI TCCGGA 1 cut(s) 207
BspQI GCTCTTC 1 cut(s) 30
BsrGI TGTACA 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 30
BstAUI TGTACA 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 171, 279
BstKTI GATC 1 cut(s) 203
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
Csp6I GTAC 2 cut(s) 106, 254
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviAII CATG 1 cut(s) 103
CviJI RGCY 5 cut(s) 5, 40, 122, 170, 278
CviKI_1 RGCY 5 cut(s) 5, 40, 122, 170, 278
CviQI GTAC 2 cut(s) 106, 254
DdeI CTNAG 2 cut(s) 171, 279
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
EciI GGCGGA 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 79
Eco32I GATATC 1 cut(s) 97
EcoRV GATATC 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 106
FaiI YATR 1 cut(s) 104
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 240
GluI GCNGC 1 cut(s) 240
HapII CCGG 3 cut(s) 70, 208, 243
Hin1II CATG 1 cut(s) 106
HinfI GANTC 3 cut(s) 53, 158, 233
HpaII CCGG 3 cut(s) 70, 208, 243
Hpy188I TCNGA 3 cut(s) 94, 163, 223
Hpy188III TCNNGA 2 cut(s) 198, 208
Hpy99I CGWCG 1 cut(s) 275
HpyCH4III ACNGT 1 cut(s) 253
HpyF3I CTNAG 2 cut(s) 171, 279
Hsp92II CATG 1 cut(s) 106
Kpn2I TCCGGA 1 cut(s) 207
Kzo9I GATC 1 cut(s) 200
LguI GCTCTTC 1 cut(s) 30
LpnPI CCDG 5 cut(s) 3, 83, 221, 246, 256
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MboII GAAGA 5 cut(s) 47, 91, 158, 186, 210
MflI RGATCY 1 cut(s) 200
MluCI AATT 1 cut(s) 214
MnlI CCTC 1 cut(s) 104
MroI TCCGGA 1 cut(s) 207
MseI TTAA 1 cut(s) 87
MspI CCGG 3 cut(s) 70, 208, 243
NdeII GATC 1 cut(s) 200
NlaIII CATG 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 30
PfeI GAWTC 3 cut(s) 53, 158, 233
Pfl23II CGTACG 1 cut(s) 253
PkrI GCNGC 1 cut(s) 241
PspLI CGTACG 1 cut(s) 253
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 2 cut(s) 107, 255
RsaNI GTAC 2 cut(s) 106, 254
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 1 cut(s) 200
SetI ASST 2 cut(s) 81, 172
Sse9I AATT 1 cut(s) 214
SsiI CCGC 2 cut(s) 237, 240
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 253
TasI AATT 1 cut(s) 214
TatI WGTACW 1 cut(s) 105
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 3 cut(s) 53, 158, 233
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TspDTI ATGAA 2 cut(s) 91, 180
TspGWI ACGGA 1 cut(s) 271
XapI RAATTY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.