Rw1G015620

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0013226
Physical Location & Seq
Forward (+)
34781013 .. 34782365
1353 bp
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UTR
Exon/CDS
Intron
Rw1G015620.1

Sequence Viewer

Length: 330 bp
ATGAAGAAAGGAATGTTCTCCTACACCTCTTATGAGGATCATTTCCAGAATGAGCCTCACTTCCTTGATGCCTGCTTTCTTTGCAGAAAGTCACTTGGAAACAACTCAGACATCTTCATGTACAGGGGAAATACACCATTCTGCAGCAAAGATTGCAGACAAGAACAAATAGAATTTGATGAGGCGAAAGAGAAGAGCTGGAAAGTGTCATCTTCTTCTTCTTCTTCTTCTTCCTCATCTTCAAGCAGAGCATCCATCAGAAAATCAGATGCCAACAAGAACTCTACCACCAACAAAACTGTACGGACAGGCACAGTTGCTGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

109

Amino Acids

12.22

Weight (kDa)

8.96

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 15 - 63 4.1e-24 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44670
fragaria_vesca FvH4_7g08920
malus_domestica MD02G1222600.v1.1 MD07G1092800.v1.1
prunus_persica Prupe.2G118400_v2.0.a1 Prupe.2G118400_v2.0.a1
pyrus_communis pycom02g18900 pycom07g07620
rosa_chinensis RchiOBHm_Chr1g0344361
rosa_laevigata RLG00000028905
rosa_multiflora Rmu_sc0024072.1_g000002
rosa_roxburghii Rroxscaffold_4G00309840
rosa_rugosa Rorug01G0173200
rosa_samantha Rh1AG189600 Rh1BG156300 Rh1CG175300 Rh1DG187900
rosa_wichuraiana Rw1G015620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 45
AcsI RAATTY 1 cut(s) 173
AfaI GTAC 2 cut(s) 122, 303
AgsI TTSAA 1 cut(s) 243
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
AlwI GGATC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 320
ApeKI GCWGC 1 cut(s) 144
ApoI RAATTY 1 cut(s) 173
BbvI GCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 263
BfmI CTRYAG 2 cut(s) 142, 321
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
BmsI GCATC 3 cut(s) 58, 259, 260
BseGI GGATG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 156
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 119
BspMAI CTGCAG 1 cut(s) 146
BspPI GGATC 1 cut(s) 45
BspQI GCTCTTC 1 cut(s) 188
BsrGI TGTACA 1 cut(s) 120
BssMI GATC 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 301, 316
Bst6I CTCTTC 1 cut(s) 188
BstAPI GCANNNNNTGC 1 cut(s) 153
BstAUI TGTACA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 81, 153
BstSFI CTRYAG 2 cut(s) 142, 321
BstV1I GCAGC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 251
Cac8I GCNNGC 1 cut(s) 73
CaiI CAGNNNCTG 1 cut(s) 320
Csp6I GTAC 2 cut(s) 121, 302
CviAII CATG 1 cut(s) 118
CviJI RGCY 3 cut(s) 55, 198, 326
CviKI_1 RGCY 3 cut(s) 55, 198, 326
CviQI GTAC 2 cut(s) 121, 302
DdeI CTNAG 1 cut(s) 106
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
FaeI CATG 1 cut(s) 121
FaiI YATR 2 cut(s) 33, 119
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 145
GluI GCNGC 1 cut(s) 145
Hin1II CATG 1 cut(s) 121
Hpy188I TCNGA 3 cut(s) 109, 260, 268
Hpy188III TCNNGA 1 cut(s) 46
HpyCH4III ACNGT 2 cut(s) 301, 316
HpyCH4V TGCA 3 cut(s) 84, 144, 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 153
HpyF3I CTNAG 1 cut(s) 106
Hsp92II CATG 1 cut(s) 121
Kzo9I GATC 1 cut(s) 37
LguI GCTCTTC 1 cut(s) 188
LpnPI CCDG 5 cut(s) 59, 85, 109, 184, 294
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 3 cut(s) 58, 259, 260
MaeIII GTNAC 1 cut(s) 90
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MluCI AATT 1 cut(s) 173
MnlI CCTC 5 cut(s) 28, 37, 66, 175, 244
MslI CAYNNNNRTG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 81, 153
NdeII GATC 1 cut(s) 37
NlaIII CATG 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 146
PstI CTGCAG 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 320
RsaI GTAC 2 cut(s) 122, 303
RsaNI GTAC 2 cut(s) 121, 302
RseI CAYNNNNRTG 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 188
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 1 cut(s) 37
SetI ASST 2 cut(s) 29, 200
SfaNI GCATC 3 cut(s) 58, 259, 260
SfcI CTRYAG 2 cut(s) 142, 321
SmiMI CAYNNNNRTG 1 cut(s) 116
Sse9I AATT 1 cut(s) 173
TaaI ACNGT 2 cut(s) 301, 316
TasI AATT 1 cut(s) 173
TatI WGTACW 1 cut(s) 120
TseFI GTSAC 1 cut(s) 90
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 2 cut(s) 17, 106
TspGWI ACGGA 1 cut(s) 319
XapI RAATTY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.