Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013226

Physical Location & Seq

Genomic Coordinates Reverse (-)

25993738 .. 25994733

Gene Structure 996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1222600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAGGACTGGTATGTTCTCCTACACCACATATGAAGATCAAACAAATGAGCCTCACTTCCTTGATGCCTGTCATCTTTGTAGAAAACCACTTGGAAACAACTCAGACATCTTCATGTACAGGGGTAACACACCATTTTGCAGTAAAGATTGTAGGCAAGAAGAGATAAAGTTTGATGAGAACAAGGAGAAGAGCTGGAAGGTTACTTCCAGCAGAAGAAAGTCGGATCCCAACAAGAACTCCACCCCCAACAAAAATGTACGGACGGGGTCTGTTGCTGTAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

96

Amino Acids

10.99

Weight (kDa)

8.98

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-FLZ	PF04570	12 - 62	4.7e-24	zinc-finger of the FCS-type, C2-C2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44670
fragaria_vesca	FvH4_7g08920
malus_domestica	MD02G1222600.v1.1 MD07G1092800.v1.1
prunus_persica	Prupe.2G118400_v2.0.a1 Prupe.2G118400_v2.0.a1
pyrus_communis	pycom02g18900 pycom07g07620
rosa_chinensis	RchiOBHm_Chr1g0344361
rosa_laevigata	RLG00000028905
rosa_multiflora	Rmu_sc0024072.1_g000002
rosa_roxburghii	Rroxscaffold_4G00309840
rosa_rugosa	Rorug01G0173200
rosa_samantha	Rh1AG189600 Rh1BG156300 Rh1CG175300 Rh1DG187900
rosa_wichuraiana	Rw1G015620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	221, 234
AfaI	GTAC	2 cut(s)	119, 261
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
AlwI	GGATC	2 cut(s)	221, 234
BamHI	GGATCC	1 cut(s)	226
BfmI	CTRYAG	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	228
BmsI	GCATC	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bse1I	ACTGG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	13
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	37, 226
BspCNI	CTCAG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	2 cut(s)	221, 234
BspQI	GCTCTTC	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	13
BssMI	GATC	2 cut(s)	37, 226
Bst6I	CTCTTC	2 cut(s)	156, 185
BstAUI	TGTACA	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	103
BstKTI	GATC	2 cut(s)	40, 229
BstMBI	GATC	2 cut(s)	37, 226
BstSFI	CTRYAG	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	118, 260
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	3 cut(s)	52, 195, 284
CviKI_1	RGCY	3 cut(s)	52, 195, 284
CviQI	GTAC	2 cut(s)	118, 260
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	2 cut(s)	39, 228
DpnII	GATC	2 cut(s)	37, 226
Eam1104I	CTCTTC	2 cut(s)	156, 185
EarI	CTCTTC	2 cut(s)	156, 185
FaeI	CATG	1 cut(s)	118
FaiI	YATR	4 cut(s)	14, 31, 33, 116
FatI	CATG	1 cut(s)	114
FauNDI	CATATG	1 cut(s)	31
Hin1II	CATG	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	106, 226
HpyAV	CCTTC	1 cut(s)	193
HpyCH4V	TGCA	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	37, 226
LguI	GCTCTTC	1 cut(s)	185
LpnPI	CCDG	4 cut(s)	82, 106, 181, 223
LweI	GCATC	1 cut(s)	55
MaeIII	GTNAC	2 cut(s)	125, 202
MalI	GATC	2 cut(s)	39, 228
MboI	GATC	2 cut(s)	37, 226
MboII	GAAGA	5 cut(s)	47, 103, 173, 202, 228
MflI	RGATCY	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	113
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	2 cut(s)	37, 226
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	185
PflFI	GACNNNGTC	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	226
PsyI	GACNNNGTC	1 cut(s)	268
RsaI	GTAC	2 cut(s)	119, 261
RsaNI	GTAC	2 cut(s)	118, 260
RseI	CAYNNNNRTG	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	185
Sau3AI	GATC	2 cut(s)	37, 226
SetI	ASST	2 cut(s)	197, 204
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	1 cut(s)	279
SmiMI	CAYNNNNRTG	1 cut(s)	113
TatI	WGTACW	1 cut(s)	117
TspDTI	ATGAA	2 cut(s)	48, 103
TspGWI	ACGGA	1 cut(s)	277
Tth111I	GACNNNGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.