FvH4_7g08920

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013226
Physical Location & Seq
Forward (+)
8710179 .. 8711031
853 bp
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UTR
Exon/CDS
Intron
FvH4_7g08920.t1

Sequence Viewer

Length: 321 bp
ATGAAGAAAGGAATGTTCTCCTTCAGCTCCTACGAAGATCATTTCCAGAATGAGCCTCACTTCCTTGATGCCTGCTTTCTCTGCAGAAAGTCACTTGGAAACAACTCAGACATCTTCATGTACAGGGGAAATACACCATTCTGTAGCAAAGATTGTAGACAAGAACAAATAGAGTTTGATGAGGCTAAAGAGAAGAGCTGGAAAGTGTCCTCTTCTTCTTCCTCCTCATCTTCAAGCAGAGCATCTATCAGAAAATCAGATGCCAACAAAGACTCTTCCACCGGCAAAACTGTACGGACAGGCACAGTTGCTGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

107

Amino Acids

11.86

Weight (kDa)

8.73

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 15 - 63 3.9e-24 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44670
fragaria_vesca FvH4_7g08920
malus_domestica MD02G1222600.v1.1 MD07G1092800.v1.1
prunus_persica Prupe.2G118400_v2.0.a1 Prupe.2G118400_v2.0.a1
pyrus_communis pycom02g18900 pycom07g07620
rosa_chinensis RchiOBHm_Chr1g0344361
rosa_laevigata RLG00000028905
rosa_multiflora Rmu_sc0024072.1_g000002
rosa_roxburghii Rroxscaffold_4G00309840
rosa_rugosa Rorug01G0173200
rosa_samantha Rh1AG189600 Rh1BG156300 Rh1CG175300 Rh1DG187900
rosa_wichuraiana Rw1G015620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 7
AfaI GTAC 2 cut(s) 122, 294
AgsI TTSAA 1 cut(s) 234
AluBI AGCT 2 cut(s) 27, 198
AluI AGCT 2 cut(s) 27, 198
AlwNI CAGNNNCTG 1 cut(s) 311
BfmI CTRYAG 3 cut(s) 82, 142, 312
BmsI GCATC 3 cut(s) 58, 250, 251
Bse118I RCCGGY 1 cut(s) 281
BseMII CTCAG 1 cut(s) 120
BseRI GAGGAG 1 cut(s) 214
BsiSI CCGG 1 cut(s) 282
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 119
BspMAI CTGCAG 1 cut(s) 86
BspQI GCTCTTC 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 281
BsrGI TGTACA 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 281
BssMI GATC 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 292, 307
Bst6I CTCTTC 3 cut(s) 188, 217, 280
BstAUI TGTACA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 106
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstSFI CTRYAG 3 cut(s) 82, 142, 312
Cac8I GCNNGC 1 cut(s) 73
CaiI CAGNNNCTG 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 281
Csp6I GTAC 2 cut(s) 121, 293
CviAII CATG 1 cut(s) 118
CviJI RGCY 5 cut(s) 27, 55, 185, 198, 317
CviKI_1 RGCY 5 cut(s) 27, 55, 185, 198, 317
CviQI GTAC 2 cut(s) 121, 293
DdeI CTNAG 1 cut(s) 106
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 3 cut(s) 188, 217, 280
EarI CTCTTC 3 cut(s) 188, 217, 280
Eco57I CTGAAG 1 cut(s) 7
FaeI CATG 1 cut(s) 121
FaiI YATR 1 cut(s) 119
FatI CATG 1 cut(s) 117
FblI GTMKAC 1 cut(s) 157
HapII CCGG 1 cut(s) 282
Hin1II CATG 1 cut(s) 121
HinfI GANTC 1 cut(s) 272
HpaII CCGG 1 cut(s) 282
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 3 cut(s) 109, 251, 259
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 292, 307
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 106
Hsp92II CATG 1 cut(s) 121
Kzo9I GATC 1 cut(s) 37
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 6 cut(s) 59, 85, 109, 184, 285, 295
LweI GCATC 3 cut(s) 58, 250, 251
MaeIII GTNAC 1 cut(s) 90
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 9 cut(s) 16, 47, 106, 204, 205, 207, 210, 222, 267
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 5 cut(s) 66, 175, 220, 232, 235
MslI CAYNNNNRTG 1 cut(s) 116
MspI CCGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 1 cut(s) 37
NlaIII CATG 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 188
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PstI CTGCAG 1 cut(s) 86
PstNI CAGNNNCTG 1 cut(s) 311
RsaI GTAC 2 cut(s) 122, 294
RsaNI GTAC 2 cut(s) 121, 293
RseI CAYNNNNRTG 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 188
Sau3AI GATC 1 cut(s) 37
SchI GAGTC 1 cut(s) 266
SetI ASST 2 cut(s) 29, 200
SfaNI GCATC 3 cut(s) 58, 250, 251
SfcI CTRYAG 3 cut(s) 82, 142, 312
SmiMI CAYNNNNRTG 1 cut(s) 116
TaaI ACNGT 2 cut(s) 292, 307
TatI WGTACW 1 cut(s) 120
TseFI GTSAC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 2 cut(s) 17, 106
TspGWI ACGGA 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.