MD07G1092800.v1.1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0013226
Physical Location & Seq
Forward (+)
9880242 .. 9881299
1058 bp
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UTR
Exon/CDS
Intron
MD07G1092800.v1.1.491

Sequence Viewer

Length: 288 bp
ATGAGGACCGGCATGTTCTCCTACACCACTTACGAAGATCAAACAAACGAGCCTCACTTCCTTGATGCTTGTCATCTTTGTAGAAAACCACTTGGAAACAACTCGGACATCTTCATGTACAGGGGTAACACACCGTTTTGCAGTAAAGATTGTAGGCAAGAACAGATAAAGTTTGATGAGAACAAAGAGAAGAGCTGGAAGCTTTCTTCCAGCAGAAGAAAGTCAGATCCCAACAAGAACTCCACCGCTAACAAAACCGTACGGACAGGGTTTGTTGCTGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

96

Amino Acids

11.01

Weight (kDa)

9.18

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 12 - 62 1.3e-24 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44670
fragaria_vesca FvH4_7g08920
malus_domestica MD02G1222600.v1.1 MD07G1092800.v1.1
prunus_persica Prupe.2G118400_v2.0.a1 Prupe.2G118400_v2.0.a1
pyrus_communis pycom02g18900 pycom07g07620
rosa_chinensis RchiOBHm_Chr1g0344361
rosa_laevigata RLG00000028905
rosa_multiflora Rmu_sc0024072.1_g000002
rosa_roxburghii Rroxscaffold_4G00309840
rosa_rugosa Rorug01G0173200
rosa_samantha Rh1AG189600 Rh1BG156300 Rh1CG175300 Rh1DG187900
rosa_wichuraiana Rw1G015620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 246
AclWI GGATC 1 cut(s) 221
AfaI GTAC 2 cut(s) 119, 261
AluBI AGCT 2 cut(s) 195, 202
AluI AGCT 2 cut(s) 195, 202
AlwI GGATC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 6
AvaII GGWCC 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bse118I RCCGGY 1 cut(s) 8
BsiSI CCGG 1 cut(s) 9
BsiWI CGTACG 1 cut(s) 259
Bsp1407I TGTACA 1 cut(s) 117
Bsp143I GATC 2 cut(s) 37, 226
BspACI CCGC 1 cut(s) 246
BspPI GGATC 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 8
BsrGI TGTACA 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 8
BssMI GATC 2 cut(s) 37, 226
Bst4CI ACNGT 2 cut(s) 135, 259
Bst6I CTCTTC 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 117
BstKTI GATC 2 cut(s) 40, 229
BstMBI GATC 2 cut(s) 37, 226
BstNSI RCATGY 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 6
Csp6I GTAC 2 cut(s) 118, 260
CviAII CATG 2 cut(s) 13, 115
CviJI RGCY 4 cut(s) 52, 195, 202, 284
CviKI_1 RGCY 4 cut(s) 52, 195, 202, 284
CviQI GTAC 2 cut(s) 118, 260
DpnI GATC 2 cut(s) 39, 228
DpnII GATC 2 cut(s) 37, 226
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 6
FaeI CATG 2 cut(s) 16, 118
FaiI YATR 2 cut(s) 14, 116
FatI CATG 2 cut(s) 12, 114
HapII CCGG 1 cut(s) 9
Hin1II CATG 2 cut(s) 16, 118
HindIII AAGCTT 1 cut(s) 200
HpaII CCGG 1 cut(s) 9
Hpy188I TCNGA 2 cut(s) 106, 226
HpyCH4III ACNGT 2 cut(s) 135, 259
HpyCH4V TGCA 1 cut(s) 141
Hsp92II CATG 2 cut(s) 16, 118
Kzo9I GATC 2 cut(s) 37, 226
LguI GCTCTTC 1 cut(s) 185
LpnPI CCDG 5 cut(s) 22, 106, 181, 223, 252
LweI GCATC 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 125
MalI GATC 2 cut(s) 39, 228
MboI GATC 2 cut(s) 37, 226
MboII GAAGA 5 cut(s) 47, 103, 198, 202, 228
MflI RGATCY 1 cut(s) 226
MnlI CCTC 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 1 cut(s) 9
NdeII GATC 2 cut(s) 37, 226
NlaIII CATG 2 cut(s) 16, 118
NspI RCATGY 1 cut(s) 16
PciSI GCTCTTC 1 cut(s) 185
Pfl23II CGTACG 1 cut(s) 259
PspLI CGTACG 1 cut(s) 259
PspPI GGNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 2 cut(s) 119, 261
RsaNI GTAC 2 cut(s) 118, 260
RseI CAYNNNNRTG 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 185
Sau3AI GATC 2 cut(s) 37, 226
Sau96I GGNCC 1 cut(s) 6
SetI ASST 2 cut(s) 197, 204
SfaNI GCATC 1 cut(s) 55
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 113
SsiI CCGC 1 cut(s) 246
TaaI ACNGT 2 cut(s) 135, 259
TatI WGTACW 1 cut(s) 117
TspDTI ATGAA 1 cut(s) 103
TspGWI ACGGA 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 6
XceI RCATGY 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.