AT2G45010

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012785
Physical Location & Seq
Forward (+)
18567852 .. 18569859
2008 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45010.1

Sequence Viewer

Length: 735 bp
ATGGCGGATGGAAACGCCAGTTCGCGTTACGTGAAATTGAGGAAAGAGCAGGCTCCTGTCGAAGAAGATATCACACCCGGTGAACTCAATCAGCCCATTGATGTTCCTCAGTTGAATGTCCGCAAGTGCCATGAATGTATGCAAGTTCTACCTGAAACCTATGAACCTCCTTCTGATGAAAACTGGACCACCGGCATTTTTGGTTGTGCTGAAGATCCAGAGAGCTGCAGGACTGGTCTCTTTTGTCCGTGTGTTCTGTTTGGGCGTAACATTGAAGCTGTGAGGGAAGAGATTCCTTGGACCCAACCATGTGTATGCCATGCTGTATGTGTCGAAGGAGGTATGGCACTTGCAGCAGTAACCGCACTCTTCAGTGGCTACATTGATCCACAAACAACAGTTGTGATCTGCGAAGGCCTCTTCTTTGCTTGGTGGATGTGTGGAATCTATTCAGGCTTGTTCCGCCAAGAACTCCAGAAGAAATATCATCTCAAGAATGCGCCTTGTGATCATTGCATGGTTCACTGTTGCTTGCACTGGTGTGCTTTGTGCCAGGAACACAGGGAGATGAAGAATCATCTTTCTGATACAGAAGCCTCATCATCAACTACTATGGATCCTCCCCCAGTTCAAGAGATGAACACTGAGGAGAGAAGAGACGCTTCATCTTCTTCGTCCTCATCCCCATCATCTGCCAAAAGCCAACACAATGATCTCGAGATGGTCCCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

244

Amino Acids

27.26

Weight (kDa)

4.88

Isoelectric Point (pI)

60.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 62 - 189 1.5e-26 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45010 AT2G45010
fragaria_vesca FvH4_7g10490
malus_domestica MD07G1110900.v1.1
prunus_persica Prupe.2G134400_v2.0.a1 Prupe.2G134400_v2.0.a1 Prupe.2G134400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348281
rosa_laevigata RLG00000028670
rosa_multiflora Rmu_sc0003661.1_g000001 Rmu_sc0007293.1_g000001
rosa_roxburghii Rroxscaffold_4G00307050
rosa_rugosa Rorug01G0194100
rosa_samantha Rh1AG211200 Rh1BG177700 Rh1CG195600 Rh1DG207200
rosa_wichuraiana Rw1G017840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 25
AciI CCGC 4 cut(s) 5, 121, 363, 463
AclWI GGATC 4 cut(s) 209, 380, 611, 624
AcuI CTGAAG 2 cut(s) 231, 355
AdeI CACNNNGTG 1 cut(s) 80
AgsI TTSAA 3 cut(s) 115, 275, 632
AjnI CCWGG 1 cut(s) 552
AleI CACNNNNGTG 1 cut(s) 540
AluBI AGCT 2 cut(s) 225, 278
AluI AGCT 2 cut(s) 225, 278
Alw26I GTCTC 2 cut(s) 242, 651
AlwI GGATC 4 cut(s) 209, 380, 611, 624
Ama87I CYCGRG 1 cut(s) 716
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 2 cut(s) 225, 353
Asp700I GAANNNNTTC 2 cut(s) 291, 448
AspLEI GCGC 1 cut(s) 502
AspS9I GGNCC 3 cut(s) 186, 300, 724
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 716
AvaII GGWCC 3 cut(s) 186, 300, 724
BamHI GGATCC 1 cut(s) 616
BbvI GCAGC 2 cut(s) 212, 365
BccI CCATC 3 cut(s) 2, 694, 715
BciT130I CCWGG 1 cut(s) 554
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 2 cut(s) 242, 651
BfmI CTRYAG 2 cut(s) 226, 731
BisI GCNGC 2 cut(s) 226, 354
BlsI GCNGC 2 cut(s) 227, 355
Bme1390I CCNGG 2 cut(s) 78, 554
Bme18I GGWCC 3 cut(s) 186, 300, 724
BmeT110I CYCGRG 1 cut(s) 716
BmgT120I GGNCC 3 cut(s) 186, 300, 724
BmiI GGNNCC 4 cut(s) 54, 302, 618, 726
BmrFI CCNGG 2 cut(s) 78, 554
BmrI ACTGGG 1 cut(s) 620
BmuI ACTGGG 1 cut(s) 620
BpmI CTGGAG 1 cut(s) 458
BpuEI CTTGAG 1 cut(s) 476
BpuMI CCSGG 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 5 cut(s) 18, 188, 238, 542, 626
Bse3DI GCAATG 1 cut(s) 511
BseBI CCWGG 1 cut(s) 554
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 3 cut(s) 13, 441, 680
BseMI GCAATG 1 cut(s) 511
BseMII CTCAG 2 cut(s) 122, 636
BseNI ACTGG 5 cut(s) 18, 188, 238, 542, 626
BseRI GAGGAG 1 cut(s) 662
BseXI GCAGC 2 cut(s) 212, 365
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 417
BsiHKCI CYCGRG 1 cut(s) 716
BsiSI CCGG 2 cut(s) 78, 192
BslFI GGGAC 1 cut(s) 710
BsmAI GTCTC 2 cut(s) 242, 651
BsmBI CGTCTC 1 cut(s) 651
BsmFI GGGAC 1 cut(s) 710
BsmI GAATGC 1 cut(s) 502
BsnI GGCC 1 cut(s) 417
Bso31I GGTCTC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 716
Bsp143I GATC 6 cut(s) 214, 385, 405, 508, 616, 712
BspACI CCGC 4 cut(s) 5, 121, 363, 463
BspANI GGCC 1 cut(s) 417
BspCNI CTCAG 2 cut(s) 121, 637
BspFNI CGCG 1 cut(s) 25
BspLI GGNNCC 4 cut(s) 54, 302, 618, 726
BspMAI CTGCAG 1 cut(s) 230
BspPI GGATC 4 cut(s) 209, 380, 611, 624
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 511
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 5 cut(s) 18, 188, 238, 542, 626
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 6 cut(s) 214, 385, 405, 508, 616, 712
BssT1I CCWWGG 1 cut(s) 296
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 2 cut(s) 400, 527
Bst6I CTCTTC 4 cut(s) 282, 374, 425, 649
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 2 cut(s) 51, 533
BstDEI CTNAG 2 cut(s) 108, 645
BstF5I GGATG 3 cut(s) 13, 441, 680
BstFNI CGCG 1 cut(s) 25
BstHHI GCGC 1 cut(s) 502
BstKTI GATC 6 cut(s) 217, 388, 408, 511, 619, 715
BstMAI GTCTC 2 cut(s) 242, 651
BstMBI GATC 6 cut(s) 214, 385, 405, 508, 616, 712
BstMWI GCNNNNNNNGC 3 cut(s) 353, 362, 462
BstNI CCWGG 1 cut(s) 554
BstSCI CCNGG 2 cut(s) 76, 552
BstSFI CTRYAG 2 cut(s) 226, 731
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 212, 365
BstX2I RGATCY 2 cut(s) 214, 616
BstYI RGATCY 2 cut(s) 214, 616
BsuRI GGCC 1 cut(s) 417
BtsCI GGATG 3 cut(s) 13, 441, 680
BtsIMutI CAGTG 4 cut(s) 379, 523, 535, 642
Cac8I GCNNGC 2 cut(s) 51, 533
CfoI GCGC 1 cut(s) 502
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 3 cut(s) 186, 300, 724
CseI GACGC 1 cut(s) 668
CviAII CATG 4 cut(s) 131, 309, 320, 517
CviJI RGCY 9 cut(s) 53, 94, 225, 278, 378, 417, 456, 596, 702
CviKI_1 RGCY 9 cut(s) 53, 94, 225, 278, 378, 417, 456, 596, 702
DdeI CTNAG 2 cut(s) 108, 645
DpnI GATC 6 cut(s) 216, 387, 407, 510, 618, 714
DpnII GATC 6 cut(s) 214, 385, 405, 508, 616, 712
DraIII CACNNNGTG 1 cut(s) 80
Eam1104I CTCTTC 4 cut(s) 282, 374, 425, 649
EarI CTCTTC 4 cut(s) 282, 374, 425, 649
EciI GGCGGA 2 cut(s) 20, 452
Eco130I CCWWGG 1 cut(s) 296
Eco147I AGGCCT 1 cut(s) 417
Eco31I GGTCTC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 3 cut(s) 186, 300, 724
Eco57I CTGAAG 2 cut(s) 231, 355
Eco88I CYCGRG 1 cut(s) 716
EcoRII CCWGG 1 cut(s) 552
EcoRV GATATC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 296
Esp3I CGTCTC 1 cut(s) 651
FaeI CATG 4 cut(s) 134, 312, 323, 520
FalI AAGNNNNNCTT 2 cut(s) 646, 678
FaqI GGGAC 1 cut(s) 710
FatI CATG 4 cut(s) 130, 308, 319, 516
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 2 cut(s) 226, 354
FokI GGATG 3 cut(s) 20, 448, 667
Fsp4HI GCNGC 2 cut(s) 226, 354
GlaI GCGC 1 cut(s) 501
GluI GCNGC 2 cut(s) 226, 354
GsuI CTGGAG 1 cut(s) 458
HaeIII GGCC 1 cut(s) 417
HapII CCGG 2 cut(s) 78, 192
HgaI GACGC 1 cut(s) 668
HhaI GCGC 1 cut(s) 502
Hin1II CATG 4 cut(s) 134, 312, 323, 520
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HinfI GANTC 3 cut(s) 292, 444, 574
HpaII CCGG 2 cut(s) 78, 192
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 83, 523
Hpy188I TCNGA 2 cut(s) 175, 586
Hpy188III TCNNGA 6 cut(s) 218, 475, 493, 632, 716, 718
Hpy8I GTNNAC 2 cut(s) 83, 523
HpyAV CCTTC 3 cut(s) 180, 329, 407
HpyCH4III ACNGT 2 cut(s) 400, 527
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 5 cut(s) 142, 228, 353, 516, 535
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 362, 462
HpyF3I CTNAG 2 cut(s) 108, 645
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 4 cut(s) 134, 312, 323, 520
HspAI GCGC 1 cut(s) 500
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 6 cut(s) 214, 385, 405, 508, 616, 712
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 2 cut(s) 212, 365
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 3 cut(s) 26, 266, 358
MalI GATC 6 cut(s) 216, 387, 407, 510, 618, 714
MboI GATC 6 cut(s) 214, 385, 405, 508, 616, 712
MflI RGATCY 2 cut(s) 214, 616
MluCI AATT 1 cut(s) 35
MroXI GAANNNNTTC 2 cut(s) 291, 448
MslI CAYNNNNRTG 2 cut(s) 313, 540
MspI CCGG 2 cut(s) 78, 192
MspR9I CCNGG 2 cut(s) 78, 554
Mva1269I GAATGC 1 cut(s) 502
MvaI CCWGG 1 cut(s) 554
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 3 cut(s) 353, 362, 462
NciI CCSGG 1 cut(s) 78
NdeII GATC 6 cut(s) 214, 385, 405, 508, 616, 712
NlaIII CATG 4 cut(s) 134, 312, 323, 520
NlaIV GGNNCC 4 cut(s) 54, 302, 618, 726
OliI CACNNNNGTG 1 cut(s) 540
PaeR7I CTCGAG 1 cut(s) 716
PceI AGGCCT 1 cut(s) 417
PctI GAATGC 1 cut(s) 502
PdmI GAANNNNTTC 2 cut(s) 291, 448
PfeI GAWTC 3 cut(s) 292, 444, 574
PkrI GCNGC 2 cut(s) 227, 355
Ppu21I YACGTR 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 552
PspGI CCWGG 1 cut(s) 552
PspN4I GGNNCC 4 cut(s) 54, 302, 618, 726
PspPI GGNCC 3 cut(s) 186, 300, 724
PstI CTGCAG 1 cut(s) 230
PsuI RGATCY 2 cut(s) 214, 616
RseI CAYNNNNRTG 2 cut(s) 313, 540
SatI GCNGC 2 cut(s) 226, 354
Sau3AI GATC 6 cut(s) 214, 385, 405, 508, 616, 712
Sau96I GGNCC 3 cut(s) 186, 300, 724
ScrFI CCNGG 2 cut(s) 78, 554
SetI ASST 7 cut(s) 33, 154, 161, 169, 227, 280, 343
SfcI CTRYAG 2 cut(s) 226, 731
Sfr274I CTCGAG 1 cut(s) 716
SinI GGWCC 3 cut(s) 186, 300, 724
SlaI CTCGAG 1 cut(s) 716
SmiMI CAYNNNNRTG 2 cut(s) 313, 540
SmlI CTYRAG 2 cut(s) 491, 716
SmoI CTYRAG 2 cut(s) 491, 716
Sse9I AATT 1 cut(s) 35
SseBI AGGCCT 1 cut(s) 417
SsiI CCGC 4 cut(s) 5, 121, 363, 463
StuI AGGCCT 1 cut(s) 417
StyD4I CCNGG 2 cut(s) 76, 552
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 2 cut(s) 400, 527
TaiI ACGT 1 cut(s) 33
TaqI TCGA 3 cut(s) 60, 333, 717
TasI AATT 1 cut(s) 35
TfiI GAWTC 3 cut(s) 292, 444, 574
TscAI CASTG 4 cut(s) 379, 530, 542, 649
TseI GCWGC 2 cut(s) 225, 353
TspDTI ATGAA 6 cut(s) 147, 177, 192, 584, 653, 654
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 4 cut(s) 379, 530, 542, 649
VpaK11BI GGWCC 3 cut(s) 186, 300, 724
XhoI CTCGAG 1 cut(s) 716
XmnI GAANNNNTTC 2 cut(s) 291, 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.