Rmu_sc0003661.1_g000001

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003661.1
OG0012785
Physical Location & Seq
Reverse (-)
904 .. 3305
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003661.1_g000001.1.cds

Sequence Viewer

Length: 780 bp
atggctgatgggactgcgcaatcaaggtacgtgaagctgaccagggaacaagaagccccaacagaggatatcacccctggagagctcaaccaacccattgaaattcctcagttaaatgttgagaggtgtgtggaatgcgggcaacccctgcctgaaagataccagcccccagctgatgaagattggacaactgggatatgtggctgcactcaagatccagagagttgtaagagttcatctgctttatcacttttttgggatttgaaagcgtacttggcacttaggatagtgaatgaggctggactggacttttttgcccatgtgtgttgtttgggcgtaatgttgaaacaatacgagaagatattccctggaataatgcctgtgtttgccatgccgtgtgtgttgaaggaggaattgctgttgcagcagcaacagcattcttccatggcgttgatcctaagacgtcagttctcatatgtgagacattgctatttgcctggtggatgtgtgcaatctacaccggattcaccgtgtgatccttgcatggtgcactgctgcatgcactggtgtgctttgtgtcaagagcacagggagatgaggggtcacttatctgattcttcaagcatggcaatgactgttgttaacccaccgccagttcaagagatgagctctagtgagaaaaaggacgctgcagctccatcagcagagtcttccggtcaaggaaacaccaattccagtcaagcaaacaccaatatggagctggcgctgcagcctctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

259

Amino Acids

28.66

Weight (kDa)

4.91

Isoelectric Point (pI)

66.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45010 AT2G45010
fragaria_vesca FvH4_7g10490
malus_domestica MD07G1110900.v1.1
prunus_persica Prupe.2G134400_v2.0.a1 Prupe.2G134400_v2.0.a1 Prupe.2G134400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348281
rosa_laevigata RLG00000028670
rosa_multiflora Rmu_sc0003661.1_g000001 Rmu_sc0007293.1_g000001
rosa_roxburghii Rroxscaffold_4G00307050
rosa_rugosa Rorug01G0194100
rosa_samantha Rh1AG211200 Rh1BG177700 Rh1CG195600 Rh1DG207200
rosa_wichuraiana Rw1G017840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 466
Acc16I TGCGCA 1 cut(s) 18
AciI CCGC 2 cut(s) 138, 650
AclWI GGATC 3 cut(s) 209, 448, 530
AcsI RAATTY 1 cut(s) 102
AcyI GRCGYC 1 cut(s) 463
AdeI CACNNNGTG 1 cut(s) 533
AfaI GTAC 2 cut(s) 29, 272
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 6 cut(s) 101, 265, 346, 406, 621, 659
AjnI CCWGG 4 cut(s) 41, 76, 367, 496
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AleI CACNNNNGTG 1 cut(s) 567
AluBI AGCT 6 cut(s) 37, 85, 173, 669, 695, 760
AluI AGCT 6 cut(s) 37, 85, 173, 669, 695, 760
Alw21I GWGCWC 4 cut(s) 87, 552, 588, 671
Alw26I GTCTC 1 cut(s) 475
Alw44I GTGCAC 1 cut(s) 548
AlwI GGATC 3 cut(s) 209, 448, 530
AlwNI CAGNNNCTG 1 cut(s) 775
ApaLI GTGCAC 1 cut(s) 548
ApeKI GCWGC 8 cut(s) 204, 424, 427, 555, 689, 692, 766, 769
ApoI RAATTY 1 cut(s) 102
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 2 cut(s) 19, 766
AsuHPI GGTGA 2 cut(s) 64, 519
BaeGI GKGCMC 1 cut(s) 552
BanII GRGCYC 2 cut(s) 87, 671
BbsI GAAGAC 1 cut(s) 702
Bbv12I GWGCWC 4 cut(s) 87, 552, 588, 671
BbvI GCAGC 7 cut(s) 191, 436, 439, 542, 676, 704, 753
BccI CCATC 2 cut(s) 2, 706
BceAI ACGGC 1 cut(s) 379
BciT130I CCWGG 4 cut(s) 43, 78, 369, 498
BcoDI GTCTC 1 cut(s) 475
BfaI CTAG 1 cut(s) 672
BfmI CTRYAG 3 cut(s) 690, 767, 776
BfoI RGCGCY 1 cut(s) 767
BisI GCNGC 8 cut(s) 205, 425, 428, 556, 690, 693, 767, 770
BlsI GCNGC 8 cut(s) 206, 426, 429, 557, 691, 694, 768, 771
Bme1390I CCNGG 4 cut(s) 43, 78, 369, 498
BmrFI CCNGG 4 cut(s) 43, 78, 369, 498
BmrI ACTGGG 1 cut(s) 201
BmuI ACTGGG 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 702
BplI GAGNNNNNCTC 2 cut(s) 653, 685
BpmI CTGGAG 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 195
BsaAI YACGTR 1 cut(s) 31
BsaHI GRCGYC 1 cut(s) 463
BsaJI CCNNGG 4 cut(s) 42, 76, 367, 444
BsaWI WCCGGW 2 cut(s) 520, 713
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 5 cut(s) 196, 309, 569, 653, 735
Bse3DI GCAATG 2 cut(s) 484, 636
BseBI CCWGG 4 cut(s) 43, 78, 369, 498
BseDI CCNNGG 4 cut(s) 42, 76, 367, 444
BseGI GGATG 1 cut(s) 509
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 2 cut(s) 484, 636
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 5 cut(s) 196, 309, 569, 653, 735
BseSI GKGCMC 1 cut(s) 552
BseXI GCAGC 7 cut(s) 191, 436, 439, 542, 676, 704, 753
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 190
BsiHKAI GWGCWC 4 cut(s) 87, 552, 588, 671
BsiSI CCGG 2 cut(s) 521, 714
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 475
BsmFI GGGAC 1 cut(s) 25
BsmI GAATGC 2 cut(s) 140, 436
Bsp1286I GDGCHC 4 cut(s) 87, 552, 588, 671
Bsp143I GATC 3 cut(s) 214, 453, 535
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 2 cut(s) 138, 650
BspCNI CTCAG 1 cut(s) 121
BspMAI CTGCAG 2 cut(s) 694, 771
BspPI GGATC 3 cut(s) 209, 448, 530
BsrDI GCAATG 2 cut(s) 484, 636
BsrI ACTGG 5 cut(s) 196, 309, 569, 653, 735
BssECI CCNNGG 4 cut(s) 42, 76, 367, 444
BssMI GATC 3 cut(s) 214, 453, 535
BssNI GRCGYC 1 cut(s) 463
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 4 cut(s) 43, 78, 369, 498
Bst4CI ACNGT 2 cut(s) 531, 637
BstACI GRCGYC 1 cut(s) 463
BstAPI GCANNNNNTGC 1 cut(s) 148
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 3 cut(s) 140, 560, 762
BstDEI CTNAG 3 cut(s) 108, 281, 458
BstDSI CCRYGG 1 cut(s) 444
BstF5I GGATG 1 cut(s) 509
BstH2I RGCGCY 1 cut(s) 767
BstHHI GCGC 2 cut(s) 19, 766
BstKTI GATC 3 cut(s) 217, 456, 538
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 3 cut(s) 214, 453, 535
BstMWI GCNNNNNNNGC 6 cut(s) 148, 275, 424, 433, 701, 766
BstNI CCWGG 4 cut(s) 43, 78, 369, 498
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 4 cut(s) 41, 76, 367, 496
BstSFI CTRYAG 3 cut(s) 690, 767, 776
BstSLI GKGCMC 1 cut(s) 552
BstV1I GCAGC 7 cut(s) 191, 436, 439, 542, 676, 704, 753
BstV2I GAAGAC 1 cut(s) 702
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BtgI CCRYGG 1 cut(s) 444
BtsCI GGATG 1 cut(s) 509
BtsI GCAGTG 1 cut(s) 550
BtsIMutI CAGTG 2 cut(s) 550, 562
Cac8I GCNNGC 3 cut(s) 140, 560, 762
CaiI CAGNNNCTG 1 cut(s) 775
CfoI GCGC 2 cut(s) 19, 766
CseI GACGC 1 cut(s) 695
Csp6I GTAC 2 cut(s) 28, 271
CviAII CATG 6 cut(s) 320, 391, 445, 544, 559, 625
CviQI GTAC 2 cut(s) 28, 271
DdeI CTNAG 3 cut(s) 108, 281, 458
DpnI GATC 3 cut(s) 216, 455, 537
DpnII GATC 3 cut(s) 214, 453, 535
DraIII CACNNNGTG 1 cut(s) 533
Ecl136II GAGCTC 2 cut(s) 85, 669
Eco130I CCWWGG 1 cut(s) 444
Eco24I GRGCYC 2 cut(s) 87, 671
Eco32I GATATC 1 cut(s) 70
Eco53kI GAGCTC 2 cut(s) 85, 669
EcoICRI GAGCTC 2 cut(s) 85, 669
EcoRII CCWGG 4 cut(s) 41, 76, 367, 496
EcoRV GATATC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 444
EcoT38I GRGCYC 2 cut(s) 87, 671
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 6 cut(s) 323, 394, 448, 547, 562, 628
FaqI GGGAC 1 cut(s) 25
FatI CATG 6 cut(s) 319, 390, 444, 543, 558, 624
FauI CCCGC 1 cut(s) 131
FauNDI CATATG 1 cut(s) 475
Fnu4HI GCNGC 8 cut(s) 205, 425, 428, 556, 690, 693, 767, 770
FokI GGATG 1 cut(s) 516
FriOI GRGCYC 2 cut(s) 87, 671
Fsp4HI GCNGC 8 cut(s) 205, 425, 428, 556, 690, 693, 767, 770
FspBI CTAG 1 cut(s) 672
FspI TGCGCA 1 cut(s) 18
GlaI GCGC 2 cut(s) 18, 765
GluI GCNGC 8 cut(s) 205, 425, 428, 556, 690, 693, 767, 770
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 767
HapII CCGG 2 cut(s) 521, 714
HgaI GACGC 1 cut(s) 695
HhaI GCGC 2 cut(s) 19, 766
Hin1I GRCGYC 1 cut(s) 463
Hin1II CATG 6 cut(s) 323, 394, 448, 547, 562, 628
Hin6I GCGC 2 cut(s) 17, 764
HinP1I GCGC 2 cut(s) 17, 764
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HinfI GANTC 3 cut(s) 524, 614, 707
HpaI GTTAAC 1 cut(s) 643
HpaII CCGG 2 cut(s) 521, 714
HphI GGTGA 2 cut(s) 64, 519
Hpy166II GTNNAC 2 cut(s) 550, 643
Hpy188I TCNGA 1 cut(s) 613
Hpy188III TCNNGA 4 cut(s) 212, 218, 581, 659
Hpy8I GTNNAC 2 cut(s) 550, 643
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 2 cut(s) 531, 637
HpyCH4IV ACGT 2 cut(s) 30, 463
HpyCH4V TGCA 9 cut(s) 207, 424, 511, 543, 550, 558, 562, 692, 769
HpyF10VI GCNNNNNNNGC 6 cut(s) 148, 275, 424, 433, 701, 766
HpyF3I CTNAG 3 cut(s) 108, 281, 458
HpySE526I ACGT 2 cut(s) 30, 463
Hsp92I GRCGYC 1 cut(s) 463
Hsp92II CATG 6 cut(s) 323, 394, 448, 547, 562, 628
HspAI GCGC 2 cut(s) 17, 764
KspAI GTTAAC 1 cut(s) 643
Kzo9I GATC 3 cut(s) 214, 453, 535
LmnI GCTCC 2 cut(s) 700, 757
Lsp1109I GCAGC 7 cut(s) 191, 436, 439, 542, 676, 704, 753
MaeI CTAG 1 cut(s) 672
MaeII ACGT 2 cut(s) 30, 463
MaeIII GTNAC 1 cut(s) 602
MalI GATC 3 cut(s) 216, 455, 537
MboI GATC 3 cut(s) 214, 453, 535
MboII GAAGA 5 cut(s) 191, 370, 432, 609, 702
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 4 cut(s) 87, 552, 588, 671
MluCI AATT 3 cut(s) 102, 413, 730
MlyI GAGTC 1 cut(s) 716
MnlI CCTC 6 cut(s) 58, 117, 117, 289, 403, 591
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 2 cut(s) 113, 642
MslI CAYNNNNRTG 3 cut(s) 567, 629, 752
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 2 cut(s) 521, 714
MspR9I CCNGG 4 cut(s) 43, 78, 369, 498
Mva1269I GAATGC 2 cut(s) 140, 436
MvaI CCWGG 4 cut(s) 43, 78, 369, 498
MwoI GCNNNNNNNGC 6 cut(s) 148, 275, 424, 433, 701, 766
NcoI CCATGG 1 cut(s) 444
NdeI CATATG 1 cut(s) 475
NdeII GATC 3 cut(s) 214, 453, 535
NlaIII CATG 6 cut(s) 323, 394, 448, 547, 562, 628
NmuCI GTSAC 1 cut(s) 602
NsbI TGCGCA 1 cut(s) 18
NspI RCATGY 1 cut(s) 562
OliI CACNNNNGTG 1 cut(s) 567
PaeI GCATGC 1 cut(s) 562
PctI GAATGC 2 cut(s) 140, 436
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 2 cut(s) 524, 614
PkrI GCNGC 8 cut(s) 206, 426, 429, 557, 691, 694, 768, 771
PleI GAGTC 1 cut(s) 715
PpsI GAGTC 1 cut(s) 715
Ppu21I YACGTR 1 cut(s) 31
Psp124BI GAGCTC 2 cut(s) 87, 671
Psp6I CCWGG 4 cut(s) 41, 76, 367, 496
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 4 cut(s) 41, 76, 367, 496
PstI CTGCAG 2 cut(s) 694, 771
PstNI CAGNNNCTG 1 cut(s) 775
PsuI RGATCY 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 29, 272
RsaNI GTAC 2 cut(s) 28, 271
RseI CAYNNNNRTG 3 cut(s) 567, 629, 752
SacI GAGCTC 2 cut(s) 87, 671
SaqAI TTAA 2 cut(s) 113, 642
SatI GCNGC 8 cut(s) 205, 425, 428, 556, 690, 693, 767, 770
Sau3AI GATC 3 cut(s) 214, 453, 535
SchI GAGTC 1 cut(s) 716
ScrFI CCNGG 4 cut(s) 43, 78, 369, 498
SduI GDGCHC 4 cut(s) 87, 552, 588, 671
SfcI CTRYAG 3 cut(s) 690, 767, 776
SmiMI CAYNNNNRTG 3 cut(s) 567, 629, 752
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
SphI GCATGC 1 cut(s) 562
Sse9I AATT 3 cut(s) 102, 413, 730
SsiI CCGC 2 cut(s) 138, 650
SspMI CTAG 1 cut(s) 672
SstI GAGCTC 2 cut(s) 87, 671
StyD4I CCNGG 4 cut(s) 41, 76, 367, 496
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 2 cut(s) 531, 637
TaiI ACGT 2 cut(s) 33, 466
TasI AATT 3 cut(s) 102, 413, 730
TfiI GAWTC 2 cut(s) 524, 614
Tru1I TTAA 2 cut(s) 113, 642
Tru9I TTAA 2 cut(s) 113, 642
TscAI CASTG 2 cut(s) 557, 569
TseFI GTSAC 1 cut(s) 602
TseI GCWGC 8 cut(s) 204, 424, 427, 555, 689, 692, 766, 769
Tsp45I GTSAC 1 cut(s) 602
TspDTI ATGAA 2 cut(s) 192, 225
TspRI CASTG 2 cut(s) 557, 569
VneI GTGCAC 1 cut(s) 548
XapI RAATTY 1 cut(s) 102
XceI RCATGY 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 757
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 1 cut(s) 672
ZraI GACGTC 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.