Rroxscaffold_4G00307050

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012785
Physical Location & Seq
Reverse (-)
28128643 .. 28131548
2906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307050.1

Sequence Viewer

Length: 747 bp
ATGGCTGATGGGAGTGCGCAATCAAGGTACGTGAAGCTGACCAGGGAACAAGAAGCCCCAACCGAGGATATCACCCCTGGAGAGCTCAACCAACCCATTGAAATTCCTCAGTTAAATGTTGAGAGGTGTGTGGAATGCGGGCAACCCCTGCCTGAAAGATACCAGCCCCCAGCTGATGAAGATTGGACAACTGGGATATGTGGCTGCACTCAAGATCCAGAGAGTTGCTGGACTGGACTTTTTTGCCCATGTGTGTTGTTTGGGCGTAATGTTGAAACAATACGAGAAGATATTCCCTGGAATAATGCCTGTGTTTGCCATGCCGTGTGTGTTGAAGGAGGAATTGCGGTTGCAGCAGCAACAGCATTCTTCCACGGCGTTGATCCTAAGACATCAGTTCTTATCTGTGAGACATTGCTATTTGCTTGGTGGATGTGTGCAATCTACACTGGTCTGTTTAGGCAGTCATTGCAAAAGAAATATCATCTCAAGGATTCACCATGTGATCCTTGCATGGTGCACTGCTGCATGCACTGGTGTGCTTTGTGTCAAGAGCACAGGGAGATGAGGGGTCACTTATCTGATTCTTCAAGCATGGCAATGACTGTTGTTAACCCACCGCCAGTTCAAGAGATGAGCTCTAGTGAGAAAAAGTACGCTGCAGCTCCATCAGCAGAGTCTTCCGGTCAAGGAAACACCAATTCCAGTCAAAACACCAATATGGAGCTGGCGCTGCAGCCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

248

Amino Acids

27.37

Weight (kDa)

4.82

Isoelectric Point (pI)

59.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 62 - 188 1.6e-27 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45010 AT2G45010
fragaria_vesca FvH4_7g10490
malus_domestica MD07G1110900.v1.1
prunus_persica Prupe.2G134400_v2.0.a1 Prupe.2G134400_v2.0.a1 Prupe.2G134400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348281
rosa_laevigata RLG00000028670
rosa_multiflora Rmu_sc0003661.1_g000001 Rmu_sc0007293.1_g000001
rosa_roxburghii Rroxscaffold_4G00307050
rosa_rugosa Rorug01G0194100
rosa_samantha Rh1AG211200 Rh1BG177700 Rh1CG195600 Rh1DG207200
rosa_wichuraiana Rw1G017840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 18
AciI CCGC 3 cut(s) 138, 347, 620
AclWI GGATC 3 cut(s) 209, 377, 500
AcsI RAATTY 1 cut(s) 102
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 2 cut(s) 29, 656
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 5 cut(s) 101, 275, 335, 591, 629
AjnI CCWGG 3 cut(s) 41, 76, 296
AleI CACNNNNGTG 1 cut(s) 537
AluBI AGCT 6 cut(s) 37, 85, 173, 639, 665, 727
AluI AGCT 6 cut(s) 37, 85, 173, 639, 665, 727
Alw21I GWGCWC 4 cut(s) 87, 522, 558, 641
Alw26I GTCTC 1 cut(s) 404
Alw44I GTGCAC 1 cut(s) 518
AlwI GGATC 3 cut(s) 209, 377, 500
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 8 cut(s) 204, 353, 356, 525, 659, 662, 733, 736
ApoI RAATTY 1 cut(s) 102
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 2 cut(s) 19, 733
AsuHPI GGTGA 2 cut(s) 64, 489
BaeGI GKGCMC 1 cut(s) 522
BanII GRGCYC 2 cut(s) 87, 641
BbsI GAAGAC 1 cut(s) 672
Bbv12I GWGCWC 4 cut(s) 87, 522, 558, 641
BbvI GCAGC 7 cut(s) 191, 365, 368, 512, 646, 674, 720
BccI CCATC 2 cut(s) 2, 676
BceAI ACGGC 2 cut(s) 308, 391
BciT130I CCWGG 3 cut(s) 43, 78, 298
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 1 cut(s) 642
BfmI CTRYAG 2 cut(s) 660, 734
BfoI RGCGCY 1 cut(s) 734
BisI GCNGC 8 cut(s) 205, 354, 357, 526, 660, 663, 734, 737
BlsI GCNGC 8 cut(s) 206, 355, 358, 527, 661, 664, 735, 738
Bme1390I CCNGG 3 cut(s) 43, 78, 298
BmrFI CCNGG 3 cut(s) 43, 78, 298
BmrI ACTGGG 1 cut(s) 201
BmuI ACTGGG 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 672
BplI GAGNNNNNCTC 2 cut(s) 623, 655
BpmI CTGGAG 1 cut(s) 99
BpuEI CTTGAG 2 cut(s) 195, 473
BsaAI YACGTR 1 cut(s) 31
BsaJI CCNNGG 5 cut(s) 42, 63, 76, 296, 373
BsaWI WCCGGW 1 cut(s) 683
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 6 cut(s) 196, 238, 454, 539, 623, 705
Bse3DI GCAATG 3 cut(s) 413, 467, 606
BseBI CCWGG 3 cut(s) 43, 78, 298
BseDI CCNNGG 5 cut(s) 42, 63, 76, 296, 373
BseGI GGATG 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 3 cut(s) 413, 467, 606
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 6 cut(s) 196, 238, 454, 539, 623, 705
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 7 cut(s) 191, 365, 368, 512, 646, 674, 720
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 190
BsiHKAI GWGCWC 4 cut(s) 87, 522, 558, 641
BsiSI CCGG 1 cut(s) 684
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 404
BsmI GAATGC 2 cut(s) 140, 365
Bsp1286I GDGCHC 4 cut(s) 87, 522, 558, 641
Bsp143I GATC 3 cut(s) 214, 382, 505
BspACI CCGC 3 cut(s) 138, 347, 620
BspCNI CTCAG 1 cut(s) 121
BspMAI CTGCAG 2 cut(s) 664, 738
BspPI GGATC 3 cut(s) 209, 377, 500
BsrDI GCAATG 3 cut(s) 413, 467, 606
BsrI ACTGG 6 cut(s) 196, 238, 454, 539, 623, 705
BssECI CCNNGG 5 cut(s) 42, 63, 76, 296, 373
BssMI GATC 3 cut(s) 214, 382, 505
Bst2UI CCWGG 3 cut(s) 43, 78, 298
Bst4CI ACNGT 1 cut(s) 607
BstAPI GCANNNNNTGC 2 cut(s) 148, 469
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 3 cut(s) 140, 530, 729
BstDEI CTNAG 2 cut(s) 108, 387
BstDSI CCRYGG 1 cut(s) 373
BstF5I GGATG 1 cut(s) 438
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 2 cut(s) 19, 733
BstKTI GATC 3 cut(s) 217, 385, 508
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 3 cut(s) 214, 382, 505
BstMWI GCNNNNNNNGC 6 cut(s) 148, 353, 362, 469, 671, 733
BstNI CCWGG 3 cut(s) 43, 78, 298
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 3 cut(s) 41, 76, 296
BstSFI CTRYAG 2 cut(s) 660, 734
BstSLI GKGCMC 1 cut(s) 522
BstV1I GCAGC 7 cut(s) 191, 365, 368, 512, 646, 674, 720
BstV2I GAAGAC 1 cut(s) 672
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BtgI CCRYGG 1 cut(s) 373
BtsCI GGATG 1 cut(s) 438
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 3 cut(s) 447, 520, 532
Cac8I GCNNGC 3 cut(s) 140, 530, 729
CfoI GCGC 2 cut(s) 19, 733
Csp6I GTAC 2 cut(s) 28, 655
CviAII CATG 6 cut(s) 249, 320, 501, 514, 529, 595
CviQI GTAC 2 cut(s) 28, 655
DdeI CTNAG 2 cut(s) 108, 387
DpnI GATC 3 cut(s) 216, 384, 507
DpnII GATC 3 cut(s) 214, 382, 505
DraIII CACNNNGTG 1 cut(s) 503
Ecl136II GAGCTC 2 cut(s) 85, 639
Eco24I GRGCYC 2 cut(s) 87, 641
Eco32I GATATC 1 cut(s) 70
Eco53kI GAGCTC 2 cut(s) 85, 639
EcoICRI GAGCTC 2 cut(s) 85, 639
EcoRII CCWGG 3 cut(s) 41, 76, 296
EcoRV GATATC 1 cut(s) 70
EcoT38I GRGCYC 2 cut(s) 87, 641
FaeI CATG 6 cut(s) 252, 323, 504, 517, 532, 598
FaiI YATR 8 cut(s) 199, 250, 321, 502, 515, 530, 596, 722
FatI CATG 6 cut(s) 248, 319, 500, 513, 528, 594
FauI CCCGC 1 cut(s) 131
Fnu4HI GCNGC 8 cut(s) 205, 354, 357, 526, 660, 663, 734, 737
FokI GGATG 1 cut(s) 445
FriOI GRGCYC 2 cut(s) 87, 641
Fsp4HI GCNGC 8 cut(s) 205, 354, 357, 526, 660, 663, 734, 737
FspBI CTAG 1 cut(s) 642
FspI TGCGCA 1 cut(s) 18
GlaI GCGC 2 cut(s) 18, 732
GluI GCNGC 8 cut(s) 205, 354, 357, 526, 660, 663, 734, 737
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 734
HapII CCGG 1 cut(s) 684
HhaI GCGC 2 cut(s) 19, 733
Hin1II CATG 6 cut(s) 252, 323, 504, 517, 532, 598
Hin6I GCGC 2 cut(s) 17, 731
HinP1I GCGC 2 cut(s) 17, 731
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HinfI GANTC 3 cut(s) 494, 584, 677
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 1 cut(s) 684
HphI GGTGA 2 cut(s) 64, 489
Hpy166II GTNNAC 2 cut(s) 520, 613
Hpy188I TCNGA 1 cut(s) 583
Hpy188III TCNNGA 4 cut(s) 212, 218, 551, 629
Hpy8I GTNNAC 2 cut(s) 520, 613
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 1 cut(s) 607
HpyCH4IV ACGT 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 6 cut(s) 148, 353, 362, 469, 671, 733
HpyF3I CTNAG 2 cut(s) 108, 387
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 6 cut(s) 252, 323, 504, 517, 532, 598
HspAI GCGC 2 cut(s) 17, 731
KspAI GTTAAC 1 cut(s) 613
Kzo9I GATC 3 cut(s) 214, 382, 505
LmnI GCTCC 2 cut(s) 670, 724
Lsp1109I GCAGC 7 cut(s) 191, 365, 368, 512, 646, 674, 720
MaeI CTAG 1 cut(s) 642
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 572
MalI GATC 3 cut(s) 216, 384, 507
MboI GATC 3 cut(s) 214, 382, 505
MboII GAAGA 5 cut(s) 191, 299, 361, 579, 672
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 4 cut(s) 87, 522, 558, 641
MluCI AATT 3 cut(s) 102, 342, 700
MlyI GAGTC 1 cut(s) 686
MnlI CCTC 5 cut(s) 58, 117, 117, 332, 561
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 2 cut(s) 113, 612
MslI CAYNNNNRTG 3 cut(s) 537, 599, 719
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 1 cut(s) 684
MspR9I CCNGG 3 cut(s) 43, 78, 298
Mva1269I GAATGC 2 cut(s) 140, 365
MvaI CCWGG 3 cut(s) 43, 78, 298
MwoI GCNNNNNNNGC 6 cut(s) 148, 353, 362, 469, 671, 733
NdeII GATC 3 cut(s) 214, 382, 505
NlaIII CATG 6 cut(s) 252, 323, 504, 517, 532, 598
NmuCI GTSAC 1 cut(s) 572
NsbI TGCGCA 1 cut(s) 18
NspI RCATGY 1 cut(s) 532
OliI CACNNNNGTG 1 cut(s) 537
PaeI GCATGC 1 cut(s) 532
PctI GAATGC 2 cut(s) 140, 365
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 2 cut(s) 494, 584
PkrI GCNGC 8 cut(s) 206, 355, 358, 527, 661, 664, 735, 738
PleI GAGTC 1 cut(s) 685
PpsI GAGTC 1 cut(s) 685
Ppu21I YACGTR 1 cut(s) 31
Psp124BI GAGCTC 2 cut(s) 87, 641
Psp6I CCWGG 3 cut(s) 41, 76, 296
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 3 cut(s) 41, 76, 296
PstI CTGCAG 2 cut(s) 664, 738
PsuI RGATCY 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 29, 656
RsaNI GTAC 2 cut(s) 28, 655
RseI CAYNNNNRTG 3 cut(s) 537, 599, 719
SacI GAGCTC 2 cut(s) 87, 641
SaqAI TTAA 2 cut(s) 113, 612
SatI GCNGC 8 cut(s) 205, 354, 357, 526, 660, 663, 734, 737
Sau3AI GATC 3 cut(s) 214, 382, 505
SchI GAGTC 1 cut(s) 686
ScrFI CCNGG 3 cut(s) 43, 78, 298
SduI GDGCHC 4 cut(s) 87, 522, 558, 641
SetI ASST 9 cut(s) 29, 33, 39, 87, 128, 175, 641, 667, 729
SfcI CTRYAG 2 cut(s) 660, 734
SmiMI CAYNNNNRTG 3 cut(s) 537, 599, 719
SmlI CTYRAG 2 cut(s) 210, 488
SmoI CTYRAG 2 cut(s) 210, 488
SphI GCATGC 1 cut(s) 532
Sse9I AATT 3 cut(s) 102, 342, 700
SsiI CCGC 3 cut(s) 138, 347, 620
SspMI CTAG 1 cut(s) 642
SstI GAGCTC 2 cut(s) 87, 641
StyD4I CCNGG 3 cut(s) 41, 76, 296
TaaI ACNGT 1 cut(s) 607
TaiI ACGT 1 cut(s) 33
TasI AATT 3 cut(s) 102, 342, 700
TfiI GAWTC 2 cut(s) 494, 584
Tru1I TTAA 2 cut(s) 113, 612
Tru9I TTAA 2 cut(s) 113, 612
TscAI CASTG 3 cut(s) 454, 527, 539
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 8 cut(s) 204, 353, 356, 525, 659, 662, 733, 736
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 1 cut(s) 192
TspRI CASTG 3 cut(s) 454, 527, 539
VneI GTGCAC 1 cut(s) 518
XapI RAATTY 1 cut(s) 102
XceI RCATGY 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 2 cut(s) 225, 724
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.