MD07G1110900.v1.1

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0012785
Physical Location & Seq
Forward (+)
12764927 .. 12767102
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1110900.v1.1.491

Sequence Viewer

Length: 729 bp
ATGGCAGAAGGGAATCCGCAATCGAGGTACGTGAAGCTAACGAGGGAACAAGAAGCGCCATCCGAGGATATCACCCCTGGAGAGCTCAACCAGCCCATTCAAATTCCTCAGTTAGGTGTCGAGAAGTGCTTGGAATGTGGGCAACCCCTACCAGAAAGATACCAACCCCCAGCTGATGAAGATTGGACAACCGGGATATTTGGTTGTGCTCAAGATCCTGAGAGTTGCTGGACTGGACTTTTCTGTCCATGCGTGTTGTTCGGGCGTAATGTTGAAACCATACGAGAAGAAATTCCTTGGAACAATGCTTGTGTTTGCCATGCCATGTGCGTTGAAGGAGGAATTGCAGTTGCAGCAGCAACAGCGTTTTTTCACGGTGTTGATCCCAAGACCTCAGTTCTCATCTGCGAGACATTGCTATTTGCCTGGTGGATGTGTGCAATCTACACAGGTCTGTTTAGGCAGTCGTTGCAAAAGAAATATCATCTCAAGGATTCACCGTGTGATCCATGCATGGTGCACTGCTGCATGCACTGGTGTGCTCTATGTCAAGAGCACAGGGAGATGAGGAACCACTTATCTGATAACACAACCACAACAATGACCGTTGTTTCCCCTCCACCGGTTCAAGAGATGGACTCCGGCGAGAAGAAGGATGCTGAAGCTTCGTCTTCAGAGTCTCCTGGTCATCCAAACACCAATATGGAGTTGGCTCTGCAGCCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

243

Amino Acids

26.93

Weight (kDa)

4.79

Isoelectric Point (pI)

57.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 62 - 188 1.2e-27 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45010 AT2G45010
fragaria_vesca FvH4_7g10490
malus_domestica MD07G1110900.v1.1
prunus_persica Prupe.2G134400_v2.0.a1 Prupe.2G134400_v2.0.a1 Prupe.2G134400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348281
rosa_laevigata RLG00000028670
rosa_multiflora Rmu_sc0003661.1_g000001 Rmu_sc0007293.1_g000001
rosa_roxburghii Rroxscaffold_4G00307050
rosa_rugosa Rorug01G0194100
rosa_samantha Rh1AG211200 Rh1BG177700 Rh1CG195600 Rh1DG207200
rosa_wichuraiana Rw1G017840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 243
AciI CCGC 1 cut(s) 17
AclWI GGATC 3 cut(s) 209, 377, 500
AcsI RAATTY 2 cut(s) 102, 291
AcuI CTGAAG 2 cut(s) 657, 681
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 113, 622
AgeI ACCGGT 1 cut(s) 622
AgsI TTSAA 4 cut(s) 101, 275, 335, 629
AjnI CCWGG 3 cut(s) 76, 425, 682
AleI CACNNNNGTG 1 cut(s) 537
AluBI AGCT 4 cut(s) 37, 85, 173, 665
AluI AGCT 4 cut(s) 37, 85, 173, 665
Alw21I GWGCWC 5 cut(s) 87, 211, 522, 544, 558
Alw26I GTCTC 2 cut(s) 404, 684
Alw44I GTGCAC 1 cut(s) 518
AlwI GGATC 3 cut(s) 209, 377, 500
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 4 cut(s) 353, 356, 525, 718
ApoI RAATTY 2 cut(s) 102, 291
AsiGI ACCGGT 1 cut(s) 622
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 193
AsuHPI GGTGA 2 cut(s) 64, 489
BaeGI GKGCMC 1 cut(s) 522
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 5 cut(s) 87, 211, 522, 544, 558
BbvI GCAGC 3 cut(s) 365, 368, 512
BccI CCATC 2 cut(s) 67, 628
BciT130I CCWGG 3 cut(s) 78, 427, 684
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 2 cut(s) 404, 684
BfmI CTRYAG 1 cut(s) 716
BfoI RGCGCY 1 cut(s) 59
BisI GCNGC 4 cut(s) 354, 357, 526, 719
BlsI GCNGC 4 cut(s) 355, 358, 527, 720
Bme1390I CCNGG 4 cut(s) 78, 193, 427, 684
BmiI GGNNCC 1 cut(s) 572
BmrFI CCNGG 4 cut(s) 78, 193, 427, 684
BmsI GCATC 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 663
BplI GAGNNNNNCTC 2 cut(s) 623, 655
BpmI CTGGAG 1 cut(s) 99
BpuEI CTTGAG 2 cut(s) 195, 473
BpuMI CCSGG 1 cut(s) 193
BsaAI YACGTR 1 cut(s) 31
BsaJI CCNNGG 3 cut(s) 63, 76, 296
BsaWI WCCGGW 1 cut(s) 622
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 622
Bse118I RCCGGY 1 cut(s) 622
Bse1I ACTGG 2 cut(s) 238, 539
Bse3DI GCAATG 1 cut(s) 413
BseBI CCWGG 3 cut(s) 78, 427, 684
BseDI CCNNGG 3 cut(s) 63, 76, 296
BseGI GGATG 4 cut(s) 59, 438, 661, 688
BseLI CCNNNNNNNGG 2 cut(s) 113, 622
BseMI GCAATG 1 cut(s) 413
BseMII CTCAG 3 cut(s) 122, 210, 408
BseNI ACTGG 2 cut(s) 238, 539
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 3 cut(s) 365, 368, 512
BseYI CCCAGC 1 cut(s) 169
BshTI ACCGGT 1 cut(s) 622
BsiHKAI GWGCWC 5 cut(s) 87, 211, 522, 544, 558
BsiSI CCGG 3 cut(s) 192, 623, 642
BslI CCNNNNNNNGG 2 cut(s) 113, 622
BsmAI GTCTC 2 cut(s) 404, 684
Bsp1286I GDGCHC 5 cut(s) 87, 211, 522, 544, 558
Bsp143I GATC 3 cut(s) 214, 382, 505
BspACI CCGC 1 cut(s) 17
BspCNI CTCAG 3 cut(s) 121, 211, 407
BspLI GGNNCC 1 cut(s) 572
BspMAI CTGCAG 1 cut(s) 720
BspPI GGATC 3 cut(s) 209, 377, 500
BsrDI GCAATG 1 cut(s) 413
BsrFI RCCGGY 1 cut(s) 622
BsrI ACTGG 2 cut(s) 238, 539
BssAI RCCGGY 1 cut(s) 622
BssECI CCNNGG 3 cut(s) 63, 76, 296
BssMI GATC 3 cut(s) 214, 382, 505
BssT1I CCWWGG 1 cut(s) 296
Bst2UI CCWGG 3 cut(s) 78, 427, 684
Bst4CI ACNGT 3 cut(s) 377, 501, 607
BstAPI GCANNNNNTGC 1 cut(s) 469
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 530
BstDEI CTNAG 3 cut(s) 108, 219, 394
BstENI CCTNNNNNAGG 1 cut(s) 111
BstF5I GGATG 4 cut(s) 59, 438, 661, 688
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 3 cut(s) 217, 385, 508
BstMAI GTCTC 2 cut(s) 404, 684
BstMBI GATC 3 cut(s) 214, 382, 505
BstMWI GCNNNNNNNGC 4 cut(s) 91, 353, 362, 469
BstNI CCWGG 3 cut(s) 78, 427, 684
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 4 cut(s) 76, 191, 425, 682
BstSFI CTRYAG 1 cut(s) 716
BstSLI GKGCMC 1 cut(s) 522
BstV1I GCAGC 3 cut(s) 365, 368, 512
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BtsCI GGATG 4 cut(s) 59, 438, 661, 688
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 2 cut(s) 520, 532
Cac8I GCNNGC 1 cut(s) 530
CfoI GCGC 1 cut(s) 58
Cfr10I RCCGGY 1 cut(s) 622
Csp6I GTAC 1 cut(s) 28
CspAI ACCGGT 1 cut(s) 622
CviAII CATG 6 cut(s) 249, 320, 325, 510, 514, 529
CviJI RGCY 7 cut(s) 37, 85, 94, 173, 665, 713, 721
CviKI_1 RGCY 7 cut(s) 37, 85, 94, 173, 665, 713, 721
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 3 cut(s) 108, 219, 394
DpnI GATC 3 cut(s) 216, 384, 507
DpnII GATC 3 cut(s) 214, 382, 505
DraIII CACNNNGTG 1 cut(s) 503
DrdI GACNNNNNNGTC 1 cut(s) 243
DseDI GACNNNNNNGTC 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 87
Eco32I GATATC 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 2 cut(s) 657, 681
EcoICRI GAGCTC 1 cut(s) 85
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoRII CCWGG 3 cut(s) 76, 425, 682
EcoRV GATATC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 296
EcoT22I ATGCAT 1 cut(s) 515
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 6 cut(s) 252, 323, 328, 513, 517, 532
FaiI YATR 9 cut(s) 250, 281, 321, 326, 511, 515, 530, 547, 704
FatI CATG 6 cut(s) 248, 319, 324, 509, 513, 528
Fnu4HI GCNGC 4 cut(s) 354, 357, 526, 719
FokI GGATG 4 cut(s) 46, 445, 668, 675
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 354, 357, 526, 719
GlaI GCGC 1 cut(s) 57
GluI GCNGC 4 cut(s) 354, 357, 526, 719
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 59
HapII CCGG 3 cut(s) 192, 623, 642
HhaI GCGC 1 cut(s) 58
Hin1II CATG 6 cut(s) 252, 323, 328, 513, 517, 532
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 4 cut(s) 13, 494, 638, 677
HpaII CCGG 3 cut(s) 192, 623, 642
HphI GGTGA 2 cut(s) 64, 489
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 3 cut(s) 64, 583, 676
Hpy188III TCNNGA 5 cut(s) 121, 212, 218, 551, 629
Hpy8I GTNNAC 1 cut(s) 520
HpyAV CCTTC 2 cut(s) 329, 646
HpyCH4III ACNGT 3 cut(s) 377, 501, 607
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 9 cut(s) 347, 353, 440, 472, 513, 520, 528, 532, 718
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 353, 362, 469
HpyF3I CTNAG 3 cut(s) 108, 219, 394
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 6 cut(s) 252, 323, 328, 513, 517, 532
HspAI GCGC 1 cut(s) 56
Kzo9I GATC 3 cut(s) 214, 382, 505
Lsp1109I GCAGC 3 cut(s) 365, 368, 512
LweI GCATC 1 cut(s) 646
MaeII ACGT 1 cut(s) 30
MalI GATC 3 cut(s) 216, 384, 507
MboI GATC 3 cut(s) 214, 382, 505
MboII GAAGA 4 cut(s) 191, 299, 661, 663
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 5 cut(s) 87, 211, 522, 544, 558
MluCI AATT 3 cut(s) 102, 291, 342
MlyI GAGTC 2 cut(s) 632, 686
MnlI CCTC 8 cut(s) 18, 36, 58, 117, 332, 403, 561, 627
Mph1103I ATGCAT 1 cut(s) 515
MroXI GAANNNNTTC 1 cut(s) 291
MslI CAYNNNNRTG 3 cut(s) 537, 599, 701
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 3 cut(s) 192, 623, 642
MspR9I CCNGG 4 cut(s) 78, 193, 427, 684
MvaI CCWGG 3 cut(s) 78, 427, 684
MwoI GCNNNNNNNGC 4 cut(s) 91, 353, 362, 469
NciI CCSGG 1 cut(s) 193
NdeII GATC 3 cut(s) 214, 382, 505
NlaIII CATG 6 cut(s) 252, 323, 328, 513, 517, 532
NlaIV GGNNCC 1 cut(s) 572
NsiI ATGCAT 1 cut(s) 515
NspI RCATGY 1 cut(s) 532
OliI CACNNNNGTG 1 cut(s) 537
PaeI GCATGC 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 2 cut(s) 13, 494
PinAI ACCGGT 1 cut(s) 622
PkrI GCNGC 4 cut(s) 355, 358, 527, 720
PleI GAGTC 2 cut(s) 632, 685
PpsI GAGTC 2 cut(s) 632, 685
Ppu21I YACGTR 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 3 cut(s) 76, 425, 682
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 3 cut(s) 76, 425, 682
PspN4I GGNNCC 1 cut(s) 572
PstI CTGCAG 1 cut(s) 720
PsuI RGATCY 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 3 cut(s) 537, 599, 701
SacI GAGCTC 1 cut(s) 87
SatI GCNGC 4 cut(s) 354, 357, 526, 719
Sau3AI GATC 3 cut(s) 214, 382, 505
SchI GAGTC 2 cut(s) 632, 686
ScrFI CCNGG 4 cut(s) 78, 193, 427, 684
SduI GDGCHC 5 cut(s) 87, 211, 522, 544, 558
SetI ASST 9 cut(s) 29, 33, 39, 87, 118, 175, 395, 454, 667
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 1 cut(s) 716
SmiMI CAYNNNNRTG 3 cut(s) 537, 599, 701
SmlI CTYRAG 2 cut(s) 210, 488
SmoI CTYRAG 2 cut(s) 210, 488
SphI GCATGC 1 cut(s) 532
Sse9I AATT 3 cut(s) 102, 291, 342
SsiI CCGC 1 cut(s) 17
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 76, 191, 425, 682
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 3 cut(s) 377, 501, 607
TaiI ACGT 1 cut(s) 33
TaqI TCGA 2 cut(s) 23, 120
TasI AATT 3 cut(s) 102, 291, 342
TfiI GAWTC 2 cut(s) 13, 494
TscAI CASTG 2 cut(s) 527, 539
TseI GCWGC 4 cut(s) 353, 356, 525, 718
TspDTI ATGAA 1 cut(s) 192
TspRI CASTG 2 cut(s) 527, 539
VneI GTGCAC 1 cut(s) 518
XagI CCTNNNNNAGG 1 cut(s) 111
XapI RAATTY 2 cut(s) 102, 291
XceI RCATGY 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 706
XmnI GAANNNNTTC 1 cut(s) 291
Zsp2I ATGCAT 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.