FvH4_7g10490

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012785
Physical Location & Seq
Forward (+)
9893715 .. 9896795
3081 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10490.t1

Sequence Viewer

Length: 735 bp
ATGGCTGAAGGGAGTGCGCAATCCAGGTATGTGAAGCTGACCAAGGAACAAGAGGCCCCAACTGAGGATATCAACCCTGGAGAGCTTAACCAACCCATTGAAGTTCCACAGTTAATTGTTGAGAGGTGTGTGGAATGTGGGCAACCCTTGCCTGAAAGATACCAGCCCCCAGCTGATGAAGATTGGACAACTGGGATATTTGGTTGCACTCAAGATCCTGAGAGTTGCTGGACTGGACTTTTTTGCCCATGTGTGTTGTTTGGGCGTAACGTTGAAACAATACGAGAAGAAATTCCCTGGAATAATGCCTGTGTTTGCCATGCCATGTGTGTTGAAGGAGGAATTGTTGTTGCAACAGCAAGTGCATTCTTTCATGGTATTGATCCTAAGACGTCAGTTCTCATCTGTGAGACATTGCTATTTGCCTGGTGGATGTGTGCAATCTACACTGGTCTATTTAGGCAGTCATTGCAAAAGAAATACCATCTCAAGGATTCACCATGTGATCCATGCATGGTGCACTGCTGCCTGCACTGGTGTGCTTTGTGTCAAGAGCACAGGGAGATGAAGGGTCACTTATCTGACAATACAACAAGCATGGCAATGACTGTTGTTAACCCACCGCCAGTTCAAGAGATGAACTCCAGTGAGAAGAAGGACGACGCTGCAGCACCATCTGCAGAGTCTTCCGGTGAAGAAAACACCAATAAGGAGCTGGCGCTGCAGCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

245

Amino Acids

27.16

Weight (kDa)

4.71

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 62 - 188 1e-27 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45010 AT2G45010
fragaria_vesca FvH4_7g10490
malus_domestica MD07G1110900.v1.1
prunus_persica Prupe.2G134400_v2.0.a1 Prupe.2G134400_v2.0.a1 Prupe.2G134400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348281
rosa_laevigata RLG00000028670
rosa_multiflora Rmu_sc0003661.1_g000001 Rmu_sc0007293.1_g000001
rosa_roxburghii Rroxscaffold_4G00307050
rosa_rugosa Rorug01G0194100
rosa_samantha Rh1AG211200 Rh1BG177700 Rh1CG195600 Rh1DG207200
rosa_wichuraiana Rw1G017840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 395
Acc16I TGCGCA 1 cut(s) 18
AciI CCGC 1 cut(s) 623
AclI AACGTT 1 cut(s) 270
AclWI GGATC 3 cut(s) 209, 377, 500
AcsI RAATTY 1 cut(s) 291
AcuI CTGAAG 1 cut(s) 27
AcyI GRCGYC 1 cut(s) 392
AdeI CACNNNGTG 1 cut(s) 503
AfiI CCNNNNNNNGG 2 cut(s) 64, 490
AgsI TTSAA 4 cut(s) 101, 275, 335, 632
AjnI CCWGG 4 cut(s) 23, 76, 296, 425
AleI CACNNNNGTG 1 cut(s) 537
AluBI AGCT 4 cut(s) 37, 85, 173, 715
AluI AGCT 4 cut(s) 37, 85, 173, 715
Alw21I GWGCWC 2 cut(s) 522, 558
Alw26I GTCTC 1 cut(s) 404
Alw44I GTGCAC 1 cut(s) 518
AlwI GGATC 3 cut(s) 209, 377, 500
AoxI GGCC 1 cut(s) 54
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 5 cut(s) 525, 665, 668, 721, 724
ApoI RAATTY 1 cut(s) 291
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 2 cut(s) 19, 721
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 489, 704
BaeGI GKGCMC 1 cut(s) 522
BbsI GAAGAC 1 cut(s) 678
Bbv12I GWGCWC 2 cut(s) 522, 558
BbvI GCAGC 4 cut(s) 512, 652, 680, 708
BccI CCATC 2 cut(s) 492, 682
BciT130I CCWGG 4 cut(s) 25, 78, 298, 427
BcoDI GTCTC 1 cut(s) 404
BfmI CTRYAG 3 cut(s) 666, 678, 722
BfoI RGCGCY 1 cut(s) 722
BisI GCNGC 5 cut(s) 526, 666, 669, 722, 725
BlsI GCNGC 5 cut(s) 527, 667, 670, 723, 726
Bme1390I CCNGG 4 cut(s) 25, 78, 298, 427
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 4 cut(s) 25, 78, 298, 427
BmrI ACTGGG 1 cut(s) 201
BmuI ACTGGG 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 678
BplI GAGNNNNNCTC 2 cut(s) 626, 658
BpmI CTGGAG 2 cut(s) 99, 628
BpuEI CTTGAG 2 cut(s) 195, 473
BsaHI GRCGYC 1 cut(s) 392
BsaJI CCNNGG 3 cut(s) 42, 76, 296
BsaWI WCCGGW 1 cut(s) 689
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 490
Bse1I ACTGG 6 cut(s) 196, 238, 454, 539, 626, 645
Bse3DI GCAATG 3 cut(s) 413, 467, 609
BseBI CCWGG 4 cut(s) 25, 78, 298, 427
BseDI CCNNGG 3 cut(s) 42, 76, 296
BseGI GGATG 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 64, 490
BseMI GCAATG 3 cut(s) 413, 467, 609
BseMII CTCAG 2 cut(s) 54, 210
BseNI ACTGG 6 cut(s) 196, 238, 454, 539, 626, 645
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 4 cut(s) 512, 652, 680, 708
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 515
BshFI GGCC 1 cut(s) 56
BsiHKAI GWGCWC 2 cut(s) 522, 558
BsiSI CCGG 1 cut(s) 690
BslI CCNNNNNNNGG 2 cut(s) 64, 490
BsmAI GTCTC 1 cut(s) 404
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 1 cut(s) 56
Bsp1286I GDGCHC 2 cut(s) 522, 558
Bsp143I GATC 3 cut(s) 214, 382, 505
BspACI CCGC 1 cut(s) 623
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 55, 211
BspLI GGNNCC 1 cut(s) 57
BspMAI CTGCAG 3 cut(s) 670, 682, 726
BspPI GGATC 3 cut(s) 209, 377, 500
BsrDI GCAATG 3 cut(s) 413, 467, 609
BsrI ACTGG 6 cut(s) 196, 238, 454, 539, 626, 645
BssECI CCNNGG 3 cut(s) 42, 76, 296
BssMI GATC 3 cut(s) 214, 382, 505
BssNI GRCGYC 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 42
Bst2UI CCWGG 4 cut(s) 25, 78, 298, 427
Bst4CI ACNGT 2 cut(s) 111, 610
BstACI GRCGYC 1 cut(s) 392
BstAPI GCANNNNNTGC 3 cut(s) 148, 469, 677
BstC8I GCNNGC 2 cut(s) 530, 717
BstDEI CTNAG 3 cut(s) 63, 219, 387
BstF5I GGATG 1 cut(s) 438
BstH2I RGCGCY 1 cut(s) 722
BstHHI GCGC 2 cut(s) 19, 721
BstKTI GATC 3 cut(s) 217, 385, 508
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 3 cut(s) 214, 382, 505
BstMWI GCNNNNNNNGC 4 cut(s) 148, 469, 677, 721
BstNI CCWGG 4 cut(s) 25, 78, 298, 427
BstSCI CCNGG 4 cut(s) 23, 76, 296, 425
BstSFI CTRYAG 3 cut(s) 666, 678, 722
BstSLI GKGCMC 1 cut(s) 522
BstV1I GCAGC 4 cut(s) 512, 652, 680, 708
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 438
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 4 cut(s) 447, 520, 532, 652
Cac8I GCNNGC 2 cut(s) 530, 717
CfoI GCGC 2 cut(s) 19, 721
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 671
CviAII CATG 8 cut(s) 249, 320, 325, 374, 501, 510, 514, 598
CviJI RGCY 8 cut(s) 5, 37, 56, 85, 166, 173, 715, 727
CviKI_1 RGCY 8 cut(s) 5, 37, 56, 85, 166, 173, 715, 727
DdeI CTNAG 3 cut(s) 63, 219, 387
DpnI GATC 3 cut(s) 216, 384, 507
DpnII GATC 3 cut(s) 214, 382, 505
DraIII CACNNNGTG 1 cut(s) 503
Eco130I CCWWGG 1 cut(s) 42
Eco32I GATATC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 4 cut(s) 23, 76, 296, 425
EcoRV GATATC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 42
EcoT22I ATGCAT 1 cut(s) 515
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 8 cut(s) 252, 323, 328, 377, 504, 513, 517, 601
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FatI CATG 8 cut(s) 248, 319, 324, 373, 500, 509, 513, 597
Fnu4HI GCNGC 5 cut(s) 526, 666, 669, 722, 725
FokI GGATG 1 cut(s) 445
Fsp4HI GCNGC 5 cut(s) 526, 666, 669, 722, 725
FspI TGCGCA 1 cut(s) 18
GlaI GCGC 2 cut(s) 18, 720
GluI GCNGC 5 cut(s) 526, 666, 669, 722, 725
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 2 cut(s) 99, 628
HaeII RGCGCY 1 cut(s) 722
HaeIII GGCC 1 cut(s) 56
HapII CCGG 1 cut(s) 690
HgaI GACGC 1 cut(s) 671
HhaI GCGC 2 cut(s) 19, 721
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 8 cut(s) 252, 323, 328, 377, 504, 513, 517, 601
Hin6I GCGC 2 cut(s) 17, 719
HinP1I GCGC 2 cut(s) 17, 719
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HinfI GANTC 2 cut(s) 494, 683
HpaI GTTAAC 1 cut(s) 616
HpaII CCGG 1 cut(s) 690
HphI GGTGA 2 cut(s) 489, 704
Hpy166II GTNNAC 2 cut(s) 520, 616
Hpy188I TCNGA 1 cut(s) 583
Hpy188III TCNNGA 4 cut(s) 212, 218, 551, 632
Hpy8I GTNNAC 2 cut(s) 520, 616
Hpy99I CGWCG 1 cut(s) 665
HpyAV CCTTC 3 cut(s) 329, 562, 649
HpyCH4III ACNGT 2 cut(s) 111, 610
HpyCH4IV ACGT 2 cut(s) 270, 392
HpyF10VI GCNNNNNNNGC 4 cut(s) 148, 469, 677, 721
HpyF3I CTNAG 3 cut(s) 63, 219, 387
HpySE526I ACGT 2 cut(s) 270, 392
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 8 cut(s) 252, 323, 328, 377, 504, 513, 517, 601
HspAI GCGC 2 cut(s) 17, 719
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 3 cut(s) 214, 382, 505
LmnI GCTCC 1 cut(s) 712
Lsp1109I GCAGC 4 cut(s) 512, 652, 680, 708
MaeII ACGT 2 cut(s) 270, 392
MaeIII GTNAC 2 cut(s) 266, 572
MalI GATC 3 cut(s) 216, 384, 507
MboI GATC 3 cut(s) 214, 382, 505
MboII GAAGA 5 cut(s) 191, 299, 664, 678, 707
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 2 cut(s) 522, 558
MluCI AATT 3 cut(s) 114, 291, 342
MlyI GAGTC 1 cut(s) 692
MnlI CCTC 4 cut(s) 46, 58, 117, 332
Mph1103I ATGCAT 1 cut(s) 515
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 3 cut(s) 87, 113, 615
MslI CAYNNNNRTG 2 cut(s) 537, 602
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 1 cut(s) 690
MspR9I CCNGG 4 cut(s) 25, 78, 298, 427
Mva1269I GAATGC 1 cut(s) 365
MvaI CCWGG 4 cut(s) 25, 78, 298, 427
MwoI GCNNNNNNNGC 4 cut(s) 148, 469, 677, 721
NdeII GATC 3 cut(s) 214, 382, 505
NlaIII CATG 8 cut(s) 252, 323, 328, 377, 504, 513, 517, 601
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 572
NsbI TGCGCA 1 cut(s) 18
NsiI ATGCAT 1 cut(s) 515
OliI CACNNNNGTG 1 cut(s) 537
PctI GAATGC 1 cut(s) 365
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 494
PkrI GCNGC 5 cut(s) 527, 667, 670, 723, 726
PleI GAGTC 1 cut(s) 691
PpsI GAGTC 1 cut(s) 691
Psp1406I AACGTT 1 cut(s) 270
Psp6I CCWGG 4 cut(s) 23, 76, 296, 425
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 4 cut(s) 23, 76, 296, 425
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 55
PstI CTGCAG 3 cut(s) 670, 682, 726
PsuI RGATCY 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 173
RseI CAYNNNNRTG 2 cut(s) 537, 602
SaqAI TTAA 3 cut(s) 87, 113, 615
SatI GCNGC 5 cut(s) 526, 666, 669, 722, 725
Sau3AI GATC 3 cut(s) 214, 382, 505
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 4 cut(s) 25, 78, 298, 427
SduI GDGCHC 2 cut(s) 522, 558
SetI ASST 8 cut(s) 29, 39, 87, 128, 175, 273, 395, 717
SfcI CTRYAG 3 cut(s) 666, 678, 722
SmiMI CAYNNNNRTG 2 cut(s) 537, 602
SmlI CTYRAG 2 cut(s) 210, 488
SmoI CTYRAG 2 cut(s) 210, 488
Sse9I AATT 3 cut(s) 114, 291, 342
SsiI CCGC 1 cut(s) 623
StyD4I CCNGG 4 cut(s) 23, 76, 296, 425
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 2 cut(s) 111, 610
TaiI ACGT 2 cut(s) 273, 395
TasI AATT 3 cut(s) 114, 291, 342
TfiI GAWTC 1 cut(s) 494
Tru1I TTAA 3 cut(s) 87, 113, 615
Tru9I TTAA 3 cut(s) 87, 113, 615
TscAI CASTG 4 cut(s) 454, 527, 539, 652
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 5 cut(s) 525, 665, 668, 721, 724
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 4 cut(s) 192, 362, 581, 653
TspRI CASTG 4 cut(s) 454, 527, 539, 652
VneI GTGCAC 1 cut(s) 518
XapI RAATTY 1 cut(s) 291
XcmI CCANNNNNNNNNTGG 1 cut(s) 712
XmnI GAANNNNTTC 1 cut(s) 291
ZraI GACGTC 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.