Prupe.2G134400_v2.0.a1

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012785
Physical Location & Seq
Forward (+)
19224219 .. 19227729
3511 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G134400.3

Sequence Viewer

Length: 768 bp
ATGGCTGATGGAAATCCCCAATCGAGGTACGTGAAGCTGACGAGGGAACAAGAAGCGCCAACGGAAGATATCAACCCTGGAGAGCTCAACCAACCCATTCAAATTCCTCAGTTAAGTGTTGATAAATGTGCGGAATGTGGGCAACCACTGCCTGAAAGATACCAACCCCCAGCCGATGAAGATTGGACAACTGGGATATTTGGCTGTGCTGAAGATCCTGAGAGTTGCTGGACTGGACTTTTCTGTCCATGTGTGCTGTTTGGGCGTAATGTTGAAACAATACGAGAAGATATTCCCTGGAACAATGCCTGTGTTTGCCATGCCATGTGTGTTGAAGGAGGAATTGCAGTTGCAGCAGTAACAGGATTCTTTCATGGTCTTGATCCTAAGACTTCGGTTCTCATCTGTGAGACATTGCTATTTGCCTGGTGGATGTGTGCAATCTACACAGGTCTGTTTAGGCAGTCATTGCAAAAGAAGTATCATCTCAAGGATTCACCCTGTGATCCATGCCTGGTGCACTGCTGCATGCACTGGTGTGCTTTGTGTCAAGAGCACAGGGAGATGAGGAACCACCTATCTGATAATACTTCCAATACGATGACCCTTGTTGCCCCTCCACCAGTTCAAGAGATGAACTCTGGAGAGAACAAGGATGCTGCTTCGTCTTCGGAGTCTACGGGTCATGAACACAATGATGCTGCTTCGTCTGCAGAGTCTTCTGATCATAAAAACACCAATATGGAGTTGGCCCTGCAGCCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

256

Amino Acids

28.24

Weight (kDa)

4.74

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45010 AT2G45010
fragaria_vesca FvH4_7g10490
malus_domestica MD07G1110900.v1.1
prunus_persica Prupe.2G134400_v2.0.a1 Prupe.2G134400_v2.0.a1 Prupe.2G134400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348281
rosa_laevigata RLG00000028670
rosa_multiflora Rmu_sc0003661.1_g000001 Rmu_sc0007293.1_g000001
rosa_roxburghii Rroxscaffold_4G00307050
rosa_rugosa Rorug01G0194100
rosa_samantha Rh1AG211200 Rh1BG177700 Rh1CG195600 Rh1DG207200
rosa_wichuraiana Rw1G017840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 243
AccI GTMKAC 1 cut(s) 677
AciI CCGC 1 cut(s) 131
AclWI GGATC 3 cut(s) 209, 377, 500
AcsI RAATTY 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 231
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 4 cut(s) 101, 275, 335, 629
AjnI CCWGG 4 cut(s) 76, 296, 425, 513
AleI CACNNNNGTG 1 cut(s) 537
AluBI AGCT 2 cut(s) 37, 85
AluI AGCT 2 cut(s) 37, 85
Alw21I GWGCWC 3 cut(s) 87, 522, 558
Alw26I GTCTC 1 cut(s) 404
Alw44I GTGCAC 1 cut(s) 518
AlwI GGATC 3 cut(s) 209, 377, 500
AoxI GGCC 1 cut(s) 750
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 5 cut(s) 353, 525, 659, 701, 757
ApoI RAATTY 1 cut(s) 102
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 751
AsuHPI GGTGA 1 cut(s) 489
BaeGI GKGCMC 1 cut(s) 522
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 2 cut(s) 660, 711
Bbv12I GWGCWC 3 cut(s) 87, 522, 558
BbvI GCAGC 4 cut(s) 365, 512, 646, 688
BccI CCATC 1 cut(s) 2
BciT130I CCWGG 4 cut(s) 78, 298, 427, 515
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 1 cut(s) 404
BfmI CTRYAG 2 cut(s) 711, 755
BfoI RGCGCY 1 cut(s) 59
BisI GCNGC 5 cut(s) 354, 526, 660, 702, 758
BlsI GCNGC 5 cut(s) 355, 527, 661, 703, 759
Bme1390I CCNGG 4 cut(s) 78, 298, 427, 515
BmgT120I GGNCC 1 cut(s) 751
BmiI GGNNCC 1 cut(s) 572
BmrFI CCNGG 4 cut(s) 78, 298, 427, 515
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 2 cut(s) 646, 688
BmuI ACTGGG 1 cut(s) 201
BpiI GAAGAC 2 cut(s) 660, 711
BplI GAGNNNNNCTC 2 cut(s) 623, 655
BpmI CTGGAG 2 cut(s) 99, 663
BpuEI CTTGAG 1 cut(s) 473
BsaAI YACGTR 1 cut(s) 31
BsaBI GATNNNNATC 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 76, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse1I ACTGG 4 cut(s) 196, 238, 539, 623
Bse3DI GCAATG 2 cut(s) 413, 467
Bse8I GATNNNNATC 1 cut(s) 12
BseBI CCWGG 4 cut(s) 78, 298, 427, 515
BseDI CCNNGG 2 cut(s) 76, 296
BseGI GGATG 2 cut(s) 438, 661
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMI GCAATG 2 cut(s) 413, 467
BseMII CTCAG 2 cut(s) 122, 210
BseNI ACTGG 4 cut(s) 196, 238, 539, 623
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 4 cut(s) 365, 512, 646, 688
BseYI CCCAGC 1 cut(s) 169
BshFI GGCC 1 cut(s) 752
BsiHKAI GWGCWC 3 cut(s) 87, 522, 558
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 404
BsnI GGCC 1 cut(s) 752
Bsp1286I GDGCHC 3 cut(s) 87, 522, 558
Bsp143I GATC 4 cut(s) 214, 382, 505, 724
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 752
BspCNI CTCAG 2 cut(s) 121, 211
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 1 cut(s) 572
BspMAI CTGCAG 2 cut(s) 715, 759
BspPI GGATC 3 cut(s) 209, 377, 500
BsrDI GCAATG 2 cut(s) 413, 467
BsrI ACTGG 4 cut(s) 196, 238, 539, 623
BssECI CCNNGG 2 cut(s) 76, 296
BssMI GATC 4 cut(s) 214, 382, 505, 724
Bst2UI CCWGG 4 cut(s) 78, 298, 427, 515
BstAPI GCANNNNNTGC 2 cut(s) 148, 469
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 530
BstDEI CTNAG 3 cut(s) 108, 219, 387
BstF5I GGATG 2 cut(s) 438, 661
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 4 cut(s) 217, 385, 508, 727
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 4 cut(s) 214, 382, 505, 724
BstMWI GCNNNNNNNGC 5 cut(s) 148, 262, 353, 469, 710
BstNI CCWGG 4 cut(s) 78, 298, 427, 515
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 4 cut(s) 76, 296, 425, 513
BstSFI CTRYAG 2 cut(s) 711, 755
BstSLI GKGCMC 1 cut(s) 522
BstV1I GCAGC 4 cut(s) 365, 512, 646, 688
BstV2I GAAGAC 2 cut(s) 660, 711
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 1 cut(s) 752
BtsCI GGATG 2 cut(s) 438, 661
BtsI GCAGTG 2 cut(s) 146, 520
BtsIMutI CAGTG 3 cut(s) 146, 520, 532
Cac8I GCNNGC 1 cut(s) 530
CciI TCATGA 1 cut(s) 685
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 751
Csp6I GTAC 1 cut(s) 28
CviAII CATG 7 cut(s) 249, 320, 325, 374, 510, 529, 686
CviJI RGCY 7 cut(s) 5, 37, 85, 173, 204, 752, 760
CviKI_1 RGCY 7 cut(s) 5, 37, 85, 173, 204, 752, 760
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 3 cut(s) 108, 219, 387
DpnI GATC 4 cut(s) 216, 384, 507, 726
DpnII GATC 4 cut(s) 214, 382, 505, 724
DraIII CACNNNGTG 1 cut(s) 503
DrdI GACNNNNNNGTC 1 cut(s) 243
DseDI GACNNNNNNGTC 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 87
Eco32I GATATC 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 85
EcoRII CCWGG 4 cut(s) 76, 296, 425, 513
EcoRV GATATC 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 87
FaeI CATG 7 cut(s) 252, 323, 328, 377, 513, 532, 689
FaiI YATR 9 cut(s) 250, 321, 326, 375, 511, 530, 687, 729, 743
FatI CATG 7 cut(s) 248, 319, 324, 373, 509, 528, 685
FbaI TGATCA 1 cut(s) 724
FblI GTMKAC 1 cut(s) 677
Fnu4HI GCNGC 5 cut(s) 354, 526, 660, 702, 758
FokI GGATG 2 cut(s) 445, 668
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 5 cut(s) 354, 526, 660, 702, 758
GlaI GCGC 1 cut(s) 57
GluI GCNGC 5 cut(s) 354, 526, 660, 702, 758
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 2 cut(s) 99, 663
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 1 cut(s) 752
HhaI GCGC 1 cut(s) 58
Hin1II CATG 7 cut(s) 252, 323, 328, 377, 513, 532, 689
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 4 cut(s) 366, 494, 674, 716
HphI GGTGA 1 cut(s) 489
Hpy166II GTNNAC 2 cut(s) 520, 678
Hpy188I TCNGA 3 cut(s) 583, 673, 724
Hpy188III TCNNGA 6 cut(s) 218, 380, 551, 629, 642, 686
Hpy8I GTNNAC 2 cut(s) 520, 678
HpyAV CCTTC 1 cut(s) 329
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 9 cut(s) 347, 353, 440, 472, 520, 528, 532, 713, 757
HpyF10VI GCNNNNNNNGC 5 cut(s) 148, 262, 353, 469, 710
HpyF3I CTNAG 3 cut(s) 108, 219, 387
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 7 cut(s) 252, 323, 328, 377, 513, 532, 689
HspAI GCGC 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 4 cut(s) 214, 382, 505, 724
Lsp1109I GCAGC 4 cut(s) 365, 512, 646, 688
LweI GCATC 2 cut(s) 646, 688
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 358
MalI GATC 4 cut(s) 216, 384, 507, 726
MboI GATC 4 cut(s) 214, 382, 505, 724
MboII GAAGA 6 cut(s) 77, 191, 224, 299, 660, 711
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 3 cut(s) 87, 522, 558
MluCI AATT 2 cut(s) 102, 342
MlyI GAGTC 2 cut(s) 683, 725
MnlI CCTC 6 cut(s) 18, 36, 117, 332, 561, 627
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 3 cut(s) 537, 696, 740
MspR9I CCNGG 4 cut(s) 78, 298, 427, 515
MvaI CCWGG 4 cut(s) 78, 298, 427, 515
MwoI GCNNNNNNNGC 5 cut(s) 148, 262, 353, 469, 710
NdeII GATC 4 cut(s) 214, 382, 505, 724
NlaIII CATG 7 cut(s) 252, 323, 328, 377, 513, 532, 689
NlaIV GGNNCC 1 cut(s) 572
NspI RCATGY 1 cut(s) 532
OliI CACNNNNGTG 1 cut(s) 537
PaeI GCATGC 1 cut(s) 532
PagI TCATGA 1 cut(s) 685
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 2 cut(s) 366, 494
PkrI GCNGC 5 cut(s) 355, 527, 661, 703, 759
PleI GAGTC 2 cut(s) 682, 724
PpsI GAGTC 2 cut(s) 682, 724
Ppu21I YACGTR 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 4 cut(s) 76, 296, 425, 513
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 4 cut(s) 76, 296, 425, 513
PspN4I GGNNCC 1 cut(s) 572
PspPI GGNCC 1 cut(s) 751
PstI CTGCAG 2 cut(s) 715, 759
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 3 cut(s) 537, 696, 740
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 5 cut(s) 354, 526, 660, 702, 758
Sau3AI GATC 4 cut(s) 214, 382, 505, 724
Sau96I GGNCC 1 cut(s) 751
SchI GAGTC 2 cut(s) 683, 725
ScrFI CCNGG 4 cut(s) 78, 298, 427, 515
SduI GDGCHC 3 cut(s) 87, 522, 558
SetI ASST 6 cut(s) 29, 33, 39, 87, 454, 579
SfaNI GCATC 2 cut(s) 646, 688
SfcI CTRYAG 2 cut(s) 711, 755
SmiMI CAYNNNNRTG 3 cut(s) 537, 696, 740
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
SphI GCATGC 1 cut(s) 532
Sse9I AATT 2 cut(s) 102, 342
SsiI CCGC 1 cut(s) 131
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 76, 296, 425, 513
TaiI ACGT 1 cut(s) 33
TaqI TCGA 1 cut(s) 23
TasI AATT 2 cut(s) 102, 342
TfiI GAWTC 2 cut(s) 366, 494
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 3 cut(s) 153, 527, 539
TseI GCWGC 5 cut(s) 353, 525, 659, 701, 757
TspDTI ATGAA 4 cut(s) 192, 362, 650, 702
TspGWI ACGGA 1 cut(s) 77
TspRI CASTG 3 cut(s) 153, 527, 539
VneI GTGCAC 1 cut(s) 518
XapI RAATTY 1 cut(s) 102
XceI RCATGY 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 745
XmiI GTMKAC 1 cut(s) 677
XmnI GAANNNNTTC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.